Rh7BG421400

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000444
Physical Location & Seq
Reverse (-)
47949573 .. 47950364
792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG421400.1

Sequence Viewer

Length: 792 bp
ATGACATCTTTGGAGGGTTTTGACCCCATAGCTATTTCCCCACAGAAACAAGACCCAGGATGGAAACACTGTCAAATCTACATTAAAACTGGGGACCCAAAAGTTGAGTTAAACAAGTGTTTATATTGTGGCAAAGTGTTTCAGGGTGGAGGGATTAATAGGTTTAAATTTCACCTTGCTGGTAGAAAAGGAAATGGTCCCATTTGTGATCAGGTCCCTCCTGATGTTCGAGTTTCCATGTTGCAGTGCTTAGATGAAAAAATTGCATCTTTTAGGCACAGAAAGAGTCAAATGGGTGCGAGCCCGAATCGTAGTTTTAGTGAACTAGACAATGTGTTTGCTGAAAATGAGGTTGGAGGGCCCAATTTGATGAATCAAGAGGAAGATGTGGGAATGAGTGTTGATAATGGGATTAGGGTTAGGGTTGGTGATAATCTGACTGATGTGCCTCTTGAGATTGCTGATTGTTTTAGGAGTGATGTTCTAGAGGGATTGACTACTGTGCCTCTTGCAGTAGTTGACTCGTATAAGGGTAATGCTGTAGGGAGAAAAGTTGGAGTACCGAATTTTAGTTTTTCGGAAAATCGAGAGGAGGGTGTTGACAGACCAGTAGGGTGGAGGGGTGGAACTTCTTTTGTAGCAACTACTGCTGGTTTGGGTTCTGGTTCTGCTAATGCTAATGCTACAAAACTGAGTTATGTCCCAGCTCCTATTCGTAGTGAGGTAGACAATCCATTTTACAAAAAACACGCAAGGAAGATCAGTTGGTCATCGCAATTCAGATTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

263

Amino Acids

28.77

Weight (kDa)

8.17

Isoelectric Point (pI)

34.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22220 AT3G22220 AT3G22220 AT3G22220 AT4G15020 AT4G15020
fragaria_vesca FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_7g22891 FvH4_7g22891 FvH4_7g22891
malus_domestica MD01G1137200.v1.1 MD02G1265900.v1.1 MD07G1202100.v1.1 MD09G1137900.v1.1 MD09G1138100.v1.1 MD17G1128400.v1.1
prunus_persica Prupe.2G058600_v2.0.a1 Prupe.2G058600_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1
pyrus_communis pycom01g15800 pycom01g15810 pycom01g15840 pycom02g22730 pycom07g18920 pycom07g18930 pycom09g05900 pycom17g12060
rosa_chinensis RchiOBHm_Chr1g0368051 RchiOBHm_Chr2g0153631 RchiOBHm_Chr2g0153641 RchiOBHm_Chr7g0237231
rosa_laevigata RLG00000001022 RLG00000020718
rosa_multiflora Rmu_sc0002117.1_g000006 Rmu_sc0004952.1_g000008 Rmu_sc0005823.1_g000001 Rmu_sc0013273.1_g000001 Rmu_sc0028071.1_g000001
rosa_roxburghii Rroxscaffold_1G00016080 Rroxscaffold_2G00094830 Rroxscaffold_4G00288900
rosa_rugosa Rorug01G0338600 Rorug01G0338700 Rorug02G0441100 Rorug02G0441200 Rorug04G0167900 Rorug07G0273200 Rorug07G0273300 Rorug07G0297100 Rorug07G0297200 Rorug07G0297300
rosa_samantha Rh1AG102500 Rh1AG102600 Rh1AG102700 Rh1AG345600 Rh1BG307900 Rh1CG323500 Rh1DG340000 Rh2AG504100 Rh2BG514800 Rh2CG490100 Rh2DG526900 Rh7AG451500 Rh7AG451700 Rh7AG459100 Rh7AG459200 Rh7BG400700 Rh7BG400800 Rh7BG421300 Rh7BG421400 Rh7BG423400 Rh7BG423500 Rh7BG423800 Rh7BG423900 Rh7CG471000 Rh7CG471100 Rh7CG471200
rosa_wichuraiana Rw1G030760 Rw2G041430 Rw5G036050 Rw7G038020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 726
AcsI RAATTY 2 cut(s) 167, 565
AfaI GTAC 1 cut(s) 561
AjnI CCWGG 1 cut(s) 55
AjuI GAANNNNNNNTTGG 2 cut(s) 336, 368
AluBI AGCT 2 cut(s) 32, 707
AluI AGCT 2 cut(s) 32, 707
AoxI GGCC 1 cut(s) 359
ApaI GGGCCC 1 cut(s) 363
ApoI RAATTY 2 cut(s) 167, 565
ArsI GACNNNNNNTTYG 2 cut(s) 320, 352
AseI ATTAAT 1 cut(s) 156
AspS9I GGNCC 5 cut(s) 94, 197, 214, 359, 360
AsuHPI GGTGA 2 cut(s) 164, 440
AvaII GGWCC 3 cut(s) 94, 197, 214
BaeGI GKGCMC 1 cut(s) 363
BanII GRGCYC 2 cut(s) 305, 363
BccI CCATC 1 cut(s) 54
BciT130I CCWGG 1 cut(s) 57
BclI TGATCA 1 cut(s) 208
BfaI CTAG 2 cut(s) 326, 485
BfmI CTRYAG 1 cut(s) 540
Bme1390I CCNGG 1 cut(s) 57
Bme18I GGWCC 3 cut(s) 94, 197, 214
BmgT120I GGNCC 5 cut(s) 94, 197, 214, 359, 360
BmiI GGNNCC 5 cut(s) 95, 96, 199, 216, 361
BmrFI CCNGG 1 cut(s) 57
BmrI ACTGGG 1 cut(s) 99
BmsI GCATC 1 cut(s) 275
BmuI ACTGGG 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 473
BsaJI CCNNGG 1 cut(s) 55
Bse1I ACTGG 2 cut(s) 94, 608
BseBI CCWGG 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 55
BseGI GGATG 1 cut(s) 65
BseMII CTCAG 1 cut(s) 683
BseNI ACTGG 2 cut(s) 94, 608
BseRI GAGGAG 1 cut(s) 605
BseSI GKGCMC 1 cut(s) 363
BseYI CCCAGC 1 cut(s) 703
BshFI GGCC 1 cut(s) 361
BslFI GGGAC 4 cut(s) 107, 183, 200, 686
BsmFI GGGAC 4 cut(s) 107, 183, 200, 686
BsnI GGCC 1 cut(s) 361
Bsp120I GGGCCC 1 cut(s) 359
Bsp1286I GDGCHC 2 cut(s) 305, 363
Bsp143I GATC 2 cut(s) 208, 759
BspANI GGCC 1 cut(s) 361
BspCNI CTCAG 1 cut(s) 684
BspLI GGNNCC 5 cut(s) 95, 96, 199, 216, 361
BsrI ACTGG 2 cut(s) 94, 608
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 2 cut(s) 208, 759
Bst2UI CCWGG 1 cut(s) 57
Bst4CI ACNGT 2 cut(s) 71, 502
BstAPI GCANNNNNTGC 1 cut(s) 647
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 2 cut(s) 250, 692
BstF5I GGATG 1 cut(s) 65
BstKTI GATC 2 cut(s) 211, 762
BstMBI GATC 2 cut(s) 208, 759
BstMWI GCNNNNNNNGC 1 cut(s) 647
BstNI CCWGG 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 55
BstSFI CTRYAG 1 cut(s) 540
BstSLI GKGCMC 1 cut(s) 363
BstXI CCANNNNNNTGG 1 cut(s) 615
BsuRI GGCC 1 cut(s) 361
BtgZI GCGATG 1 cut(s) 756
BtsCI GGATG 1 cut(s) 65
BtsI GCAGTG 1 cut(s) 251
BtsIMutI CAGTG 2 cut(s) 67, 251
Cac8I GCNNGC 1 cut(s) 301
Cfr13I GGNCC 5 cut(s) 94, 197, 214, 359, 360
Csp6I GTAC 1 cut(s) 560
CviAII CATG 1 cut(s) 238
CviJI RGCY 4 cut(s) 32, 303, 361, 707
CviKI_1 RGCY 4 cut(s) 32, 303, 361, 707
CviQI GTAC 1 cut(s) 560
DdeI CTNAG 2 cut(s) 250, 692
DpnI GATC 2 cut(s) 210, 761
DpnII GATC 2 cut(s) 208, 759
DraI TTTAAA 1 cut(s) 166
Eco24I GRGCYC 2 cut(s) 305, 363
Eco47I GGWCC 3 cut(s) 94, 197, 214
EcoO109I RGGNCCY 3 cut(s) 94, 214, 359
EcoRII CCWGG 1 cut(s) 55
EcoT38I GRGCYC 2 cut(s) 305, 363
FaeI CATG 1 cut(s) 241
FaiI YATR 5 cut(s) 29, 124, 239, 528, 699
FaqI GGGAC 4 cut(s) 107, 183, 200, 686
FatI CATG 1 cut(s) 237
FbaI TGATCA 1 cut(s) 208
FblI GTMKAC 1 cut(s) 726
FokI GGATG 1 cut(s) 72
FriOI GRGCYC 2 cut(s) 305, 363
FspBI CTAG 2 cut(s) 326, 485
GsaI CCCAGC 1 cut(s) 707
HaeIII GGCC 1 cut(s) 361
Hin1II CATG 1 cut(s) 241
HincII GTYRAC 2 cut(s) 520, 601
HindII GTYRAC 2 cut(s) 520, 601
HinfI GANTC 4 cut(s) 286, 307, 373, 521
HphI GGTGA 2 cut(s) 164, 440
Hpy166II GTNNAC 4 cut(s) 323, 520, 601, 727
Hpy188I TCNGA 3 cut(s) 438, 580, 782
Hpy188III TCNNGA 5 cut(s) 221, 377, 452, 485, 587
Hpy8I GTNNAC 4 cut(s) 323, 520, 601, 727
HpyCH4III ACNGT 2 cut(s) 71, 502
HpyCH4V TGCA 3 cut(s) 244, 266, 512
HpyF10VI GCNNNNNNNGC 1 cut(s) 647
HpyF3I CTNAG 2 cut(s) 250, 692
Hsp92II CATG 1 cut(s) 241
KflI GGGWCCC 1 cut(s) 94
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 2 cut(s) 208, 759
LmnI GCTCC 1 cut(s) 712
LweI GCATC 1 cut(s) 275
MaeI CTAG 2 cut(s) 326, 485
MalI GATC 2 cut(s) 210, 761
MboI GATC 2 cut(s) 208, 759
MboII GAAGA 2 cut(s) 395, 769
MhlI GDGCHC 2 cut(s) 305, 363
MluCI AATT 5 cut(s) 167, 261, 364, 565, 776
MlyI GAGTC 2 cut(s) 295, 515
MmeI TCCRAC 2 cut(s) 334, 535
MseI TTAA 4 cut(s) 84, 110, 156, 165
MspR9I CCNGG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 57
MwoI GCNNNNNNNGC 1 cut(s) 647
NdeII GATC 2 cut(s) 208, 759
NlaIII CATG 1 cut(s) 241
NlaIV GGNNCC 5 cut(s) 95, 96, 199, 216, 361
PfeI GAWTC 2 cut(s) 307, 373
PleI GAGTC 2 cut(s) 294, 515
PpsI GAGTC 2 cut(s) 294, 515
PpuMI RGGWCCY 2 cut(s) 94, 214
PshBI ATTAAT 1 cut(s) 156
Psp5II RGGWCCY 2 cut(s) 94, 214
Psp6I CCWGG 1 cut(s) 55
PspFI CCCAGC 1 cut(s) 703
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 5 cut(s) 95, 96, 199, 216, 361
PspOMI GGGCCC 1 cut(s) 359
PspPI GGNCC 5 cut(s) 94, 197, 214, 359, 360
PspPPI RGGWCCY 2 cut(s) 94, 214
RsaI GTAC 1 cut(s) 561
RsaNI GTAC 1 cut(s) 560
SaqAI TTAA 4 cut(s) 84, 110, 156, 165
Sau3AI GATC 2 cut(s) 208, 759
Sau96I GGNCC 5 cut(s) 94, 197, 214, 359, 360
SchI GAGTC 2 cut(s) 295, 515
ScrFI CCNGG 1 cut(s) 57
SduI GDGCHC 2 cut(s) 305, 363
SetI ASST 7 cut(s) 34, 164, 177, 216, 354, 709, 726
SfaNI GCATC 1 cut(s) 275
SfcI CTRYAG 1 cut(s) 540
SinI GGWCC 3 cut(s) 94, 197, 214
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
Sse9I AATT 5 cut(s) 167, 261, 364, 565, 776
SspMI CTAG 2 cut(s) 326, 485
StyD4I CCNGG 1 cut(s) 55
TaaI ACNGT 2 cut(s) 71, 502
TaqI TCGA 2 cut(s) 229, 586
TasI AATT 5 cut(s) 167, 261, 364, 565, 776
TfiI GAWTC 2 cut(s) 307, 373
Tru1I TTAA 4 cut(s) 84, 110, 156, 165
Tru9I TTAA 4 cut(s) 84, 110, 156, 165
TscAI CASTG 2 cut(s) 74, 251
TspDTI ATGAA 2 cut(s) 270, 386
TspRI CASTG 2 cut(s) 74, 251
VpaK11BI GGWCC 3 cut(s) 94, 197, 214
VspI ATTAAT 1 cut(s) 156
XapI RAATTY 2 cut(s) 167, 565
XbaI TCTAGA 1 cut(s) 484
XmiI GTMKAC 1 cut(s) 726
XspI CTAG 2 cut(s) 326, 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.