pycom07g18930

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000444
Physical Location & Seq
Forward (+)
21281785 .. 21283674
1890 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g18930.1

Sequence Viewer

Length: 1116 bp
ATGGTCAGAAGGTCTACTTTTGGCAATGATATTGTAGAACCAGGCGCCACTCGCTTCTCAACAAACTTTACAACACTAAAACGACTGGTTGATCTAAAACACTGTTTACAGGTTATGGTTACTTCACAGGAGTGGATGGACTCCCTATATTCAAAGGAACCGGGGGGACTGGAGATGTTAGATCTTATTAGTAATCAGTCATTTTGGTCCTCATGCATCCTGATTGTTGGCCTGACAAATCCTCTCTTGCGGGTTTTGAGAATGGTTGGTAGTGAGAAGAGGCCTGCAATGGGATACGTGTATGCTGGAATGTATCGGGCAAAAGAAACAATTAAGAAAGAACTCGTCAAGAGAGAGGAGTACATGATATACTGGAACAAGATCGATCAACGATGGGAACAGCATTGGTGTTCTCCTCTTCATGCTGCAGGCTTCTACCTTAACCCCAAAATATTTTATAGTTTCGAAGGAGATATGCATGGTGATATCCTCTCGCATATGTTTGATTGCATTGAGAGATTGGTTCCTGATACAAAAGTCCAAGATAAAATCATCAAAGAGCTAAATTTGTACAAGAGTGCTGCTGGAGATTTTAAAAGGAAGATGGCAATTAGGGCTAAAGACACTCTGCTTCCTGCTGAATGGTGGTCAACATATGGAGGAGGTTGCCCAAATTTGACACGCTTGGCAATCCGAATTCTCAGTCAAACTTGCAGTTCGATTGGGTGCAGGCGAAATGAGATTCCTTTTGAGAAAGCACACAACACAAGGAACTGCCTTGAGCGTCAACGTCTCAGTGACCTTGTCTTTGTTCAGTATAACTTGCGACTGAAACAAATGGTTGATAAGAACAGCGAACAAGATGTTATGGATCCTTTATCATTTGAAAACATTAGCATGACAGAAGACTGGGTTACCGGGAAGGACATGTGCTTAGATGACAATGGTAGTTTCGATTGGATGGAACTCGATTCAACCTCTGCCAGCACAATGCTTTTAGGGCCGTCAAATGATGATGCCGATGACTTGGGCTCTGGTTTTTATGATTATGAGATCTTTAGTAGAGCAAAACACGGTGAAGAGGAAAATGTTGAAGACAATGTAGAAAATCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

372

Amino Acids

42.83

Weight (kDa)

5.34

Isoelectric Point (pI)

49.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 187 - 275 2.2e-11 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22220 AT3G22220 AT3G22220 AT3G22220 AT4G15020 AT4G15020
fragaria_vesca FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_7g22891 FvH4_7g22891 FvH4_7g22891
malus_domestica MD01G1137200.v1.1 MD02G1265900.v1.1 MD07G1202100.v1.1 MD09G1137900.v1.1 MD09G1138100.v1.1 MD17G1128400.v1.1
prunus_persica Prupe.2G058600_v2.0.a1 Prupe.2G058600_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1
pyrus_communis pycom01g15800 pycom01g15810 pycom01g15840 pycom02g22730 pycom07g18920 pycom07g18930 pycom09g05900 pycom17g12060
rosa_chinensis RchiOBHm_Chr1g0368051 RchiOBHm_Chr2g0153631 RchiOBHm_Chr2g0153641 RchiOBHm_Chr7g0237231
rosa_laevigata RLG00000001022 RLG00000020718
rosa_multiflora Rmu_sc0002117.1_g000006 Rmu_sc0004952.1_g000008 Rmu_sc0005823.1_g000001 Rmu_sc0013273.1_g000001 Rmu_sc0028071.1_g000001
rosa_roxburghii Rroxscaffold_1G00016080 Rroxscaffold_2G00094830 Rroxscaffold_4G00288900
rosa_rugosa Rorug01G0338600 Rorug01G0338700 Rorug02G0441100 Rorug02G0441200 Rorug04G0167900 Rorug07G0273200 Rorug07G0273300 Rorug07G0297100 Rorug07G0297200 Rorug07G0297300
rosa_samantha Rh1AG102500 Rh1AG102600 Rh1AG102700 Rh1AG345600 Rh1BG307900 Rh1CG323500 Rh1DG340000 Rh2AG504100 Rh2BG514800 Rh2CG490100 Rh2DG526900 Rh7AG451500 Rh7AG451700 Rh7AG459100 Rh7AG459200 Rh7BG400700 Rh7BG400800 Rh7BG421300 Rh7BG421400 Rh7BG423400 Rh7BG423500 Rh7BG423800 Rh7BG423900 Rh7CG471000 Rh7CG471100 Rh7CG471200
rosa_wichuraiana Rw1G030760 Rw2G041430 Rw5G036050 Rw7G038020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 44
AccI GTMKAC 1 cut(s) 14
AciI CCGC 1 cut(s) 250
AclWI GGATC 2 cut(s) 866, 879
AcsI RAATTY 3 cut(s) 565, 673, 696
AcyI GRCGYC 1 cut(s) 45
AfaI GTAC 2 cut(s) 362, 572
AfiI CCNNNNNNNGG 1 cut(s) 290
AflIII ACRYGT 2 cut(s) 297, 927
AgsI TTSAA 4 cut(s) 153, 887, 975, 1094
AjnI CCWGG 1 cut(s) 40
AleI CACNNNNGTG 1 cut(s) 130
AluBI AGCT 1 cut(s) 562
AluI AGCT 1 cut(s) 562
Alw26I GTCTC 1 cut(s) 797
AlwI GGATC 2 cut(s) 866, 879
AoxI GGCC 3 cut(s) 229, 281, 1001
ApeKI GCWGC 2 cut(s) 425, 581
ApoI RAATTY 3 cut(s) 565, 673, 696
ArsI GACNNNNNNTTYG 4 cut(s) 688, 720, 791, 823
AspLEI GCGC 1 cut(s) 47
AspS9I GGNCC 2 cut(s) 207, 1001
AsuC2I CCSGG 2 cut(s) 162, 919
AsuHPI GGTGA 2 cut(s) 494, 1088
AsuII TTCGAA 1 cut(s) 465
AvaII GGWCC 1 cut(s) 207
BaeI ACNNNNGTAYC 2 cut(s) 522, 555
BamHI GGATCC 1 cut(s) 871
BanI GGYRCC 1 cut(s) 44
BanII GRGCYC 1 cut(s) 1034
BbsI GAAGAC 2 cut(s) 912, 1101
BbvI GCAGC 2 cut(s) 412, 568
BccI CCATC 4 cut(s) 130, 387, 598, 955
BceAI ACGGC 1 cut(s) 988
BciT130I CCWGG 1 cut(s) 42
BciVI GTATCC 1 cut(s) 287
BcnI CCSGG 2 cut(s) 162, 919
BcoDI GTCTC 1 cut(s) 797
BfmI CTRYAG 1 cut(s) 426
BfoI RGCGCY 1 cut(s) 48
BfuI GTATCC 1 cut(s) 287
BglII AGATCT 2 cut(s) 181, 1053
BisI GCNGC 2 cut(s) 426, 582
BlsI GCNGC 2 cut(s) 427, 583
Bme1390I CCNGG 3 cut(s) 42, 162, 919
Bme18I GGWCC 1 cut(s) 207
BmgT120I GGNCC 2 cut(s) 207, 1001
BmiI GGNNCC 4 cut(s) 46, 159, 525, 873
BmrFI CCNGG 3 cut(s) 42, 162, 919
BmrI ACTGGG 1 cut(s) 919
BmsI GCATC 2 cut(s) 225, 1006
BmuI ACTGGG 1 cut(s) 919
BpiI GAAGAC 2 cut(s) 912, 1101
BpmI CTGGAG 2 cut(s) 191, 606
Bpu14I TTCGAA 1 cut(s) 465
BpuEI CTTGAG 1 cut(s) 800
BpuMI CCSGG 2 cut(s) 162, 919
Bsa29I ATCGAT 1 cut(s) 384
BsaAI YACGTR 1 cut(s) 298
BsaHI GRCGYC 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 161
Bsc4I CCNNNNNNNGG 1 cut(s) 290
Bse1I ACTGG 4 cut(s) 90, 174, 377, 914
Bse3DI GCAATG 2 cut(s) 31, 294
BseBI CCWGG 1 cut(s) 42
BseCI ATCGAT 1 cut(s) 384
BseDI CCNNGG 1 cut(s) 161
BseGI GGATG 3 cut(s) 141, 216, 966
BseLI CCNNNNNNNGG 1 cut(s) 290
BseMI GCAATG 2 cut(s) 31, 294
BseMII CTCAG 2 cut(s) 715, 808
BseNI ACTGG 4 cut(s) 90, 174, 377, 914
BseRI GAGGAG 3 cut(s) 371, 405, 675
BseXI GCAGC 2 cut(s) 412, 568
BsgI GTGCAG 1 cut(s) 748
BshFI GGCC 3 cut(s) 231, 283, 1003
BshNI GGYRCC 1 cut(s) 44
BshVI ATCGAT 1 cut(s) 384
BsiSI CCGG 2 cut(s) 161, 918
BslFI GGGAC 1 cut(s) 180
BslI CCNNNNNNNGG 1 cut(s) 290
BsmAI GTCTC 1 cut(s) 797
BsmBI CGTCTC 1 cut(s) 797
BsmFI GGGAC 1 cut(s) 180
BsnI GGCC 3 cut(s) 231, 283, 1003
Bsp119I TTCGAA 1 cut(s) 465
Bsp1286I GDGCHC 1 cut(s) 1034
Bsp1407I TGTACA 1 cut(s) 570
Bsp143I GATC 6 cut(s) 91, 181, 381, 385, 871, 1053
BspACI CCGC 1 cut(s) 250
BspANI GGCC 3 cut(s) 231, 283, 1003
BspCNI CTCAG 2 cut(s) 714, 807
BspDI ATCGAT 1 cut(s) 384
BspLI GGNNCC 4 cut(s) 46, 159, 525, 873
BspMAI CTGCAG 1 cut(s) 430
BspPI GGATC 2 cut(s) 866, 879
BspT104I TTCGAA 1 cut(s) 465
BspT107I GGYRCC 1 cut(s) 44
BsrDI GCAATG 2 cut(s) 31, 294
BsrGI TGTACA 1 cut(s) 570
BsrI ACTGG 4 cut(s) 90, 174, 377, 914
BssECI CCNNGG 1 cut(s) 161
BssMI GATC 6 cut(s) 91, 181, 381, 385, 871, 1053
BssNI GRCGYC 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 42
Bst4CI ACNGT 2 cut(s) 104, 1076
Bst6I CTCTTC 3 cut(s) 272, 423, 1074
BstACI GRCGYC 1 cut(s) 45
BstAUI TGTACA 1 cut(s) 570
BstBAI YACGTR 1 cut(s) 298
BstBI TTCGAA 1 cut(s) 465
BstC8I GCNNGC 4 cut(s) 285, 430, 731, 985
BstDEI CTNAG 3 cut(s) 701, 794, 934
BstEII GGTNACC 1 cut(s) 913
BstF5I GGATG 3 cut(s) 141, 216, 966
BstH2I RGCGCY 1 cut(s) 48
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 6 cut(s) 94, 184, 384, 388, 874, 1056
BstMAI GTCTC 1 cut(s) 797
BstMBI GATC 6 cut(s) 91, 181, 381, 385, 871, 1053
BstMWI GCNNNNNNNGC 3 cut(s) 51, 614, 1000
BstNI CCWGG 1 cut(s) 42
BstNSI RCATGY 1 cut(s) 931
BstPI GGTNACC 1 cut(s) 913
BstSCI CCNGG 3 cut(s) 40, 160, 917
BstSFI CTRYAG 1 cut(s) 426
BstV1I GCAGC 2 cut(s) 412, 568
BstV2I GAAGAC 2 cut(s) 912, 1101
BstX2I RGATCY 3 cut(s) 181, 871, 1053
BstYI RGATCY 3 cut(s) 181, 871, 1053
Bsu15I ATCGAT 1 cut(s) 384
BsuI GTATCC 1 cut(s) 287
BsuRI GGCC 3 cut(s) 231, 283, 1003
BsuTUI ATCGAT 1 cut(s) 384
BtsCI GGATG 3 cut(s) 141, 216, 966
BtsIMutI CAGTG 2 cut(s) 100, 802
Cac8I GCNNGC 4 cut(s) 285, 430, 731, 985
CfoI GCGC 1 cut(s) 47
Cfr13I GGNCC 2 cut(s) 207, 1001
ClaI ATCGAT 1 cut(s) 384
CseI GACGC 1 cut(s) 773
Csp6I GTAC 2 cut(s) 361, 571
CviAII CATG 6 cut(s) 213, 364, 422, 479, 898, 928
CviJI RGCY 7 cut(s) 231, 283, 432, 562, 617, 1003, 1032
CviKI_1 RGCY 7 cut(s) 231, 283, 432, 562, 617, 1003, 1032
CviQI GTAC 2 cut(s) 361, 571
DdeI CTNAG 3 cut(s) 701, 794, 934
DinI GGCGCC 1 cut(s) 46
DpnI GATC 6 cut(s) 93, 183, 383, 387, 873, 1055
DpnII GATC 6 cut(s) 91, 181, 381, 385, 871, 1053
DraI TTTAAA 1 cut(s) 595
Eam1104I CTCTTC 3 cut(s) 272, 423, 1074
EarI CTCTTC 3 cut(s) 272, 423, 1074
Eco147I AGGCCT 1 cut(s) 283
Eco24I GRGCYC 1 cut(s) 1034
Eco32I GATATC 1 cut(s) 487
Eco47I GGWCC 1 cut(s) 207
Eco91I GGTNACC 1 cut(s) 913
EcoO65I GGTNACC 1 cut(s) 913
EcoRI GAATTC 1 cut(s) 696
EcoRII CCWGG 1 cut(s) 40
EcoRV GATATC 1 cut(s) 487
EcoT22I ATGCAT 2 cut(s) 218, 480
EcoT38I GRGCYC 1 cut(s) 1034
EgeI GGCGCC 1 cut(s) 46
EheI GGCGCC 1 cut(s) 46
Esp3I CGTCTC 1 cut(s) 797
FaeI CATG 6 cut(s) 216, 367, 425, 482, 901, 931
FalI AAGNNNNNCTT 1 cut(s) 33
FaqI GGGAC 1 cut(s) 180
FatI CATG 6 cut(s) 212, 363, 421, 478, 897, 927
FauI CCCGC 1 cut(s) 243
FauNDI CATATG 2 cut(s) 498, 655
FblI GTMKAC 1 cut(s) 14
Fnu4HI GCNGC 2 cut(s) 426, 582
FokI GGATG 3 cut(s) 148, 203, 973
FriOI GRGCYC 1 cut(s) 1034
Fsp4HI GCNGC 2 cut(s) 426, 582
GlaI GCGC 1 cut(s) 46
GluI GCNGC 2 cut(s) 426, 582
GsuI CTGGAG 2 cut(s) 191, 606
HaeII RGCGCY 1 cut(s) 48
HaeIII GGCC 3 cut(s) 231, 283, 1003
HapII CCGG 2 cut(s) 161, 918
HgaI GACGC 1 cut(s) 773
HhaI GCGC 1 cut(s) 47
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 6 cut(s) 216, 367, 425, 482, 901, 931
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HincII GTYRAC 2 cut(s) 651, 788
HindII GTYRAC 2 cut(s) 651, 788
HinfI GANTC 3 cut(s) 140, 742, 971
HpaII CCGG 2 cut(s) 161, 918
HphI GGTGA 2 cut(s) 494, 1088
Hpy166II GTNNAC 4 cut(s) 15, 107, 651, 788
Hpy188I TCNGA 2 cut(s) 8, 695
Hpy188III TCNNGA 3 cut(s) 220, 349, 527
Hpy8I GTNNAC 4 cut(s) 15, 107, 651, 788
HpyAV CCTTC 3 cut(s) 3, 461, 916
HpyCH4III ACNGT 2 cut(s) 104, 1076
HpyCH4IV ACGT 2 cut(s) 297, 790
HpyCH4V TGCA 7 cut(s) 216, 287, 428, 478, 510, 714, 729
HpyF10VI GCNNNNNNNGC 3 cut(s) 51, 614, 1000
HpyF3I CTNAG 3 cut(s) 701, 794, 934
HpySE526I ACGT 2 cut(s) 297, 790
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 6 cut(s) 216, 367, 425, 482, 901, 931
HspAI GCGC 1 cut(s) 45
KasI GGCGCC 1 cut(s) 44
Kzo9I GATC 6 cut(s) 91, 181, 381, 385, 871, 1053
Lsp1109I GCAGC 2 cut(s) 412, 568
LweI GCATC 2 cut(s) 225, 1006
MaeII ACGT 2 cut(s) 297, 790
MaeIII GTNAC 3 cut(s) 118, 797, 913
MalI GATC 6 cut(s) 93, 183, 383, 387, 873, 1055
MboI GATC 6 cut(s) 91, 181, 381, 385, 871, 1053
MboII GAAGA 6 cut(s) 289, 410, 613, 917, 1091, 1106
MflI RGATCY 3 cut(s) 181, 871, 1053
MhlI GDGCHC 1 cut(s) 1034
MluCI AATT 5 cut(s) 330, 565, 609, 673, 696
Mly113I GGCGCC 1 cut(s) 45
MlyI GAGTC 1 cut(s) 134
Mph1103I ATGCAT 2 cut(s) 218, 480
MseI TTAA 3 cut(s) 333, 441, 594
MslI CAYNNNNRTG 2 cut(s) 130, 896
MspI CCGG 2 cut(s) 161, 918
MspR9I CCNGG 3 cut(s) 42, 162, 919
MvaI CCWGG 1 cut(s) 42
MwoI GCNNNNNNNGC 3 cut(s) 51, 614, 1000
NarI GGCGCC 1 cut(s) 45
NciI CCSGG 2 cut(s) 162, 919
NdeI CATATG 2 cut(s) 498, 655
NdeII GATC 6 cut(s) 91, 181, 381, 385, 871, 1053
NlaIII CATG 6 cut(s) 216, 367, 425, 482, 901, 931
NlaIV GGNNCC 4 cut(s) 46, 159, 525, 873
NmuCI GTSAC 1 cut(s) 797
NsiI ATGCAT 2 cut(s) 218, 480
NspI RCATGY 1 cut(s) 931
NspV TTCGAA 1 cut(s) 465
OliI CACNNNNGTG 1 cut(s) 130
PceI AGGCCT 1 cut(s) 283
PciI ACATGT 1 cut(s) 927
PfeI GAWTC 2 cut(s) 742, 971
PflFI GACNNNGTC 1 cut(s) 803
PkrI GCNGC 2 cut(s) 427, 583
PleI GAGTC 1 cut(s) 134
PluTI GGCGCC 1 cut(s) 48
PpsI GAGTC 1 cut(s) 134
Ppu21I YACGTR 1 cut(s) 298
PscI ACATGT 1 cut(s) 927
Psp6I CCWGG 1 cut(s) 40
PspEI GGTNACC 1 cut(s) 913
PspGI CCWGG 1 cut(s) 40
PspN4I GGNNCC 4 cut(s) 46, 159, 525, 873
PspPI GGNCC 2 cut(s) 207, 1001
PstI CTGCAG 1 cut(s) 430
PsuI RGATCY 3 cut(s) 181, 871, 1053
PsyI GACNNNGTC 1 cut(s) 803
RsaI GTAC 2 cut(s) 362, 572
RsaNI GTAC 2 cut(s) 361, 571
RseI CAYNNNNRTG 2 cut(s) 130, 896
SaqAI TTAA 3 cut(s) 333, 441, 594
SatI GCNGC 2 cut(s) 426, 582
Sau3AI GATC 6 cut(s) 91, 181, 381, 385, 871, 1053
Sau96I GGNCC 2 cut(s) 207, 1001
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 3 cut(s) 42, 162, 919
SduI GDGCHC 1 cut(s) 1034
SetI ASST 9 cut(s) 14, 114, 300, 441, 564, 667, 793, 804, 980
SfaNI GCATC 2 cut(s) 225, 1006
SfcI CTRYAG 1 cut(s) 426
SfoI GGCGCC 1 cut(s) 46
SfuI TTCGAA 1 cut(s) 465
SinI GGWCC 1 cut(s) 207
SmiMI CAYNNNNRTG 2 cut(s) 130, 896
SmlI CTYRAG 1 cut(s) 779
SmoI CTYRAG 1 cut(s) 779
Sse9I AATT 5 cut(s) 330, 565, 609, 673, 696
SseBI AGGCCT 1 cut(s) 283
SsiI CCGC 1 cut(s) 250
SspDI GGCGCC 1 cut(s) 44
SspI AATATT 1 cut(s) 453
StuI AGGCCT 1 cut(s) 283
StyD4I CCNGG 3 cut(s) 40, 160, 917
TaaI ACNGT 2 cut(s) 104, 1076
TaiI ACGT 2 cut(s) 300, 793
TaqI TCGA 5 cut(s) 384, 465, 719, 954, 969
TasI AATT 5 cut(s) 330, 565, 609, 673, 696
TatI WGTACW 2 cut(s) 360, 570
TfiI GAWTC 2 cut(s) 742, 971
Tru1I TTAA 3 cut(s) 333, 441, 594
Tru9I TTAA 3 cut(s) 333, 441, 594
TscAI CASTG 2 cut(s) 107, 802
TseFI GTSAC 1 cut(s) 797
TseI GCWGC 2 cut(s) 425, 581
Tsp45I GTSAC 1 cut(s) 797
TspDTI ATGAA 1 cut(s) 410
TspRI CASTG 2 cut(s) 107, 802
Tth111I GACNNNGTC 1 cut(s) 803
VpaK11BI GGWCC 1 cut(s) 207
XapI RAATTY 3 cut(s) 565, 673, 696
XceI RCATGY 1 cut(s) 931
XmiI GTMKAC 1 cut(s) 14
Zsp2I ATGCAT 2 cut(s) 218, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.