Rw7G038020

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000444
Physical Location & Seq
Reverse (-)
57711559 .. 57714598
3040 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G038020.1

Sequence Viewer

Length: 2370 bp
ATGACATCTTTGGAGGGTTTTGAGCCCATAGCTATTTCCCCACAGAAACAAGACCCAGGATGGAAACACTGTCAAATCTACATTAAAACTGGGGACCCAAAAGTTGAGTTAAACGAGTGTTTATATTGTGGCAAAGTGTTTCAGGCTAGAGGGATTAATAGGTTTAAATCTCACCTTGCTGTTTCCATGTTGCAGTGCTTAGATGAAAAAATTGCATCTTTTAGGCACAGAAAGGGTCAAATGGGTGCGAACCCGAGTCGTTGTTTTAGTGAACTAGACAATGTGTTTACTGAAAATGAAGTTGGAGGGCCCAATTTGATGAACCAAGAGGAAGATGTGGGAATGAGTGTTGATAATGGGATTAGGGTTGGTGATAATCTGACTGATGTGCCTCTTGAGATTGATGATTGTTTTAGGAGTGATGGTCTAGAGGGATTGACTATTGTGCCTCTTGCAGTAGTTGACTCGTATAAGGGTAATGCTCTAGGGAGAAAAGTTGGAAAACCGAATTTCAGTTTTTTGGAAAATCGAGAGGAGGGTGTTGATAGACGAGTAGGGTGGAGGGGTGGAACTTCTTTTGTAGCTACTACTGCTGGTTTGGGTTCTGGTTCTGGTTCTGCTAATGCTACTAAACTGAGTTATGTCCCAGCTCCTATTCGTAGTGAGGTCGACAAGCCATTTTACGAAAACACACAAGGAAGATCAGTTGGTCATCCCAATTCAGATTTGTTTGAAAATGAAGCAGAAGTTGGCACAAGTAATACAAACGGGAAAAACAGGAAGAGGGTAAGAGATAAAAATGGATCAATGGCTGCCAATGCTGGCACTGTTGGCAGTAATGGTGAAGTTGAAAAGGCGAACAGCCAGCAGATTCATATGGCAATAGGACGGTTTCTATATGAAATTCAGGCTCCTCTGGATGCCGTGAAGAACTCTGTTTATTTTCAGCCAATGATCGATGCAATTGCTTCTGGGGGAATGGAGAGTAAACCACCCTCGTATCATGATCTTCGGGTAAAGAATGATATTCATCAGCACACAAATACTTGGGAACGGAATGGTTGCTCTCTTCTGGTAAACCAATTGAACTCCGAAAAGGGTATAATATTGCTAAATTTCTCAGTGTACAATGCTTTGTATGAGATTCTTAAGCAAGTGTTGGAAGAAGTTGGAGTTGGGCATGTTTTGCAAGTAATTACAAATAGTGAGGAGCACTATGTTGTTTCTGGGAAGAGGTTGATGGATACATTCCCTACGCCGCTATATCTGTACGTTACAAGATTTATCTATAAACAAGTCGTCATTCTGAATATGATGCAGAGGTATACTTTTGGAAATGACATTGTGAAGCTGGGAGTAACTCGGTTTGCTACAGACTTCATGACTTTGAAACAAATGGCTGACCTTAAATTTAATTTGCAGACTATGGTTGCTTCAAATGAATGGGAAGGCTGCGCTTATGCTCAAACATCAGAAGGATCAGCAATGCTGGATGTATTAAGTAATCACACATTTTGGTCTTCATGCATTATGATTACTCGATTAACAAATCCACTATTGCGAGTTTTGAGAATTGTTGGTAGCCAGAAGGAGGCAGCAATGGGATATGTATTTGGAGGAATGTATCGAAAAAAAGAACCAATCAAGAGAGAACTTGTCAAGAAAGAAGAATATATGGCTTACTGGAATATTATAGATTACAGGTGGCAAAAATTATGGGATCTTCCTCTTCATGCTGCTGAAATGCACAAGGTGATTATGTCAAAGATGCTTGACTGCATAGAGAAATTGGTTCCAGATTTAAATGTTCAAGATGAAATTAGCAAAGAGATAAACTTGTACAAAAATGCTGTTGGAGATCTGGGGAGGAATTTGGCCATTAGAGCCAGAGACACTCTGCTTCCCGCTGAATGGTGGTCTACATATGGCTGTGGTTTCCCAAATATGGCATGTTTTGCAGTTCGTATTCTCTGTCAAACTTGCAGCTTAATTCAGTGCAAGGAGAATCAGATTCCTTCTGACCAGTTGCACAAGACGAGGAACAGCTTAGGGCATGAACGGCTTAGTGATTTTGTCTTTGTTCGGTACAACTTGCAACTAGGACAGATGGTTCATAAGAACAAAGAGCATGAGTATGTGGATCCTATATCATTTGACAACACTAGCATTGTTGAAGACTGGGTAACAGAGACCGAAATGTACCTAGAAGACAATGAAAATACTGATTGGAAGGCACTTGATCCGCCCTTTTATAATTCAAGGCTTTTAGAACTTTCAGTTGATGAAGCTGAAGACTTGGGTTCAGGTTTTGATGATAACGAGATTTTCTTTAACGGATTGCAAGTGGTTAAAGAAGAAGGCAGAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

789

Amino Acids

89.08

Weight (kDa)

5.5

Isoelectric Point (pI)

33.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF659 PF04937 377 - 419 1.8e-08 Domain of unknown function (DUF659)
Dimer_Tnp_hAT PF05699 621 - 698 1.2e-06 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22220 AT3G22220 AT3G22220 AT3G22220 AT4G15020 AT4G15020
fragaria_vesca FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_7g22891 FvH4_7g22891 FvH4_7g22891
malus_domestica MD01G1137200.v1.1 MD02G1265900.v1.1 MD07G1202100.v1.1 MD09G1137900.v1.1 MD09G1138100.v1.1 MD17G1128400.v1.1
prunus_persica Prupe.2G058600_v2.0.a1 Prupe.2G058600_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1
pyrus_communis pycom01g15800 pycom01g15810 pycom01g15840 pycom02g22730 pycom07g18920 pycom07g18930 pycom09g05900 pycom17g12060
rosa_chinensis RchiOBHm_Chr1g0368051 RchiOBHm_Chr2g0153631 RchiOBHm_Chr2g0153641 RchiOBHm_Chr7g0237231
rosa_laevigata RLG00000001022 RLG00000020718
rosa_multiflora Rmu_sc0002117.1_g000006 Rmu_sc0004952.1_g000008 Rmu_sc0005823.1_g000001 Rmu_sc0013273.1_g000001 Rmu_sc0028071.1_g000001
rosa_roxburghii Rroxscaffold_1G00016080 Rroxscaffold_2G00094830 Rroxscaffold_4G00288900
rosa_rugosa Rorug01G0338600 Rorug01G0338700 Rorug02G0441100 Rorug02G0441200 Rorug04G0167900 Rorug07G0273200 Rorug07G0273300 Rorug07G0297100 Rorug07G0297200 Rorug07G0297300
rosa_samantha Rh1AG102500 Rh1AG102600 Rh1AG102700 Rh1AG345600 Rh1BG307900 Rh1CG323500 Rh1DG340000 Rh2AG504100 Rh2BG514800 Rh2CG490100 Rh2DG526900 Rh7AG451500 Rh7AG451700 Rh7AG459100 Rh7AG459200 Rh7BG400700 Rh7BG400800 Rh7BG421300 Rh7BG421400 Rh7BG423400 Rh7BG423500 Rh7BG423800 Rh7BG423900 Rh7CG471000 Rh7CG471100 Rh7CG471200
rosa_wichuraiana Rw1G030760 Rw2G041430 Rw5G036050 Rw7G038020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2253
AccI GTMKAC 3 cut(s) 669, 1325, 1919
AciI CCGC 3 cut(s) 1259, 1905, 2243
AclWI GGATC 6 cut(s) 811, 1486, 1728, 2135, 2148, 2234
AcoI YGGCCR 1 cut(s) 1875
AcsI RAATTY 5 cut(s) 508, 903, 1114, 1409, 1870
AcuI CTGAAG 1 cut(s) 2310
AdeI CACNNNGTG 1 cut(s) 1753
AfaI GTAC 5 cut(s) 1127, 1271, 1841, 2087, 2201
AfiI CCNNNNNNNGG 3 cut(s) 1591, 1911, 1945
AflII CTTAAG 1 cut(s) 1148
AgsI TTSAA 8 cut(s) 734, 851, 1087, 1390, 1437, 1811, 2174, 2259
AjnI CCWGG 1 cut(s) 55
AjuI GAANNNNNNNTTGG 6 cut(s) 285, 317, 732, 764, 1158, 1190
AloI GAACNNNNNNTCC 2 cut(s) 2094, 2126
AluBI AGCT 7 cut(s) 32, 584, 650, 1351, 1986, 2046, 2288
AluI AGCT 7 cut(s) 32, 584, 650, 1351, 1986, 2046, 2288
Alw21I GWGCWC 1 cut(s) 1215
Alw26I GTCTC 2 cut(s) 1884, 2183
AlwI GGATC 6 cut(s) 811, 1486, 1728, 2135, 2148, 2234
Ama87I CYCGRG 1 cut(s) 253
AoxI GGCC 2 cut(s) 308, 1875
ApaI GGGCCC 1 cut(s) 312
ApeKI GCWGC 5 cut(s) 812, 1452, 1595, 1736, 1983
ApoI RAATTY 5 cut(s) 508, 903, 1114, 1409, 1870
AseI ATTAAT 1 cut(s) 156
AspLEI GCGC 1 cut(s) 1457
AspS9I GGNCC 3 cut(s) 94, 308, 309
AsuHPI GGTGA 4 cut(s) 164, 383, 854, 1765
AvaI CYCGRG 1 cut(s) 253
AvaII GGWCC 1 cut(s) 94
BaeGI GKGCMC 1 cut(s) 312
BaeI ACNNNNGTAYC 2 cut(s) 983, 1016
BalI TGGCCA 1 cut(s) 1877
BamHI GGATCC 1 cut(s) 2140
BanII GRGCYC 2 cut(s) 27, 312
BbsI GAAGAC 4 cut(s) 1512, 2181, 2214, 2298
Bbv12I GWGCWC 1 cut(s) 1215
BbvI GCAGC 5 cut(s) 799, 1439, 1607, 1723, 1995
BccI CCATC 4 cut(s) 54, 416, 1234, 2101
BceAI ACGGC 2 cut(s) 908, 2075
BcgI CGANNNNNNTGC 2 cut(s) 947, 981
BciT130I CCWGG 1 cut(s) 57
BciVI GTATCC 1 cut(s) 1237
BcoDI GTCTC 2 cut(s) 1884, 2183
BfaI CTAG 7 cut(s) 147, 275, 428, 485, 2099, 2163, 2204
BfmI CTRYAG 1 cut(s) 1371
BfrI CTTAAG 1 cut(s) 1148
BfuI GTATCC 1 cut(s) 1237
BglII AGATCT 1 cut(s) 1858
BisI GCNGC 6 cut(s) 813, 1259, 1453, 1596, 1737, 1984
BlsI GCNGC 6 cut(s) 814, 1260, 1454, 1597, 1738, 1985
Bme1390I CCNGG 1 cut(s) 57
Bme18I GGWCC 1 cut(s) 94
BmeT110I CYCGRG 1 cut(s) 253
BmgT120I GGNCC 3 cut(s) 94, 308, 309
BmiI GGNNCC 6 cut(s) 95, 96, 310, 912, 1794, 2142
BmrFI CCNGG 1 cut(s) 57
BmrI ACTGGG 2 cut(s) 99, 2188
BmsI GCATC 5 cut(s) 224, 910, 949, 1305, 1758
BmuI ACTGGG 2 cut(s) 99, 2188
BpiI GAAGAC 4 cut(s) 1512, 2181, 2214, 2298
Bpu10I CCTNAGC 1 cut(s) 2047
BpuEI CTTGAG 1 cut(s) 416
Bsa29I ATCGAT 1 cut(s) 957
BsaBI GATNNNNATC 1 cut(s) 1029
BsaI GGTCTC 1 cut(s) 2183
BsaJI CCNNGG 1 cut(s) 55
BsaXI ACNNNNNCTCC 2 cut(s) 409, 439
Bsc4I CCNNNNNNNGG 3 cut(s) 1591, 1911, 1945
Bse1I ACTGG 4 cut(s) 94, 1688, 2023, 2183
Bse3DI GCAATG 2 cut(s) 1491, 1605
Bse8I GATNNNNATC 1 cut(s) 1029
BseBI CCWGG 1 cut(s) 57
BseCI ATCGAT 1 cut(s) 957
BseDI CCNNGG 1 cut(s) 55
BseGI GGATG 4 cut(s) 65, 712, 925, 1498
BseJI GATNNNNATC 1 cut(s) 1029
BseLI CCNNNNNNNGG 3 cut(s) 1591, 1911, 1945
BseMI GCAATG 2 cut(s) 1491, 1605
BseMII CTCAG 2 cut(s) 626, 1134
BseNI ACTGG 4 cut(s) 94, 1688, 2023, 2183
BseRI GAGGAG 3 cut(s) 548, 903, 1223
BseSI GKGCMC 1 cut(s) 312
BseXI GCAGC 5 cut(s) 799, 1439, 1607, 1723, 1995
BseYI CCCAGC 2 cut(s) 646, 1351
BshFI GGCC 2 cut(s) 310, 1877
BshVI ATCGAT 1 cut(s) 957
BsiHKAI GWGCWC 1 cut(s) 1215
BsiHKCI CYCGRG 1 cut(s) 253
BslFI GGGAC 2 cut(s) 107, 629
BslI CCNNNNNNNGG 3 cut(s) 1591, 1911, 1945
BsmAI GTCTC 2 cut(s) 1884, 2183
BsmFI GGGAC 2 cut(s) 107, 629
BsnI GGCC 2 cut(s) 310, 1877
Bso31I GGTCTC 1 cut(s) 2183
BsoBI CYCGRG 1 cut(s) 253
Bsp120I GGGCCC 1 cut(s) 308
Bsp1286I GDGCHC 3 cut(s) 27, 312, 1215
Bsp1407I TGTACA 2 cut(s) 1125, 1839
Bsp143I GATC 9 cut(s) 701, 803, 954, 1006, 1478, 1720, 1858, 2140, 2239
BspACI CCGC 3 cut(s) 1259, 1905, 2243
BspANI GGCC 2 cut(s) 310, 1877
BspCNI CTCAG 2 cut(s) 627, 1133
BspDI ATCGAT 1 cut(s) 957
BspHI TCATGA 2 cut(s) 1003, 1380
BspLI GGNNCC 6 cut(s) 95, 96, 310, 912, 1794, 2142
BspPI GGATC 6 cut(s) 811, 1486, 1728, 2135, 2148, 2234
BspTI CTTAAG 1 cut(s) 1148
BspTNI GGTCTC 1 cut(s) 2183
BsrDI GCAATG 2 cut(s) 1491, 1605
BsrGI TGTACA 2 cut(s) 1125, 1839
BsrI ACTGG 4 cut(s) 94, 1688, 2023, 2183
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 9 cut(s) 701, 803, 954, 1006, 1478, 1720, 1858, 2140, 2239
BssNAI GTATAC 1 cut(s) 1326
Bst1107I GTATAC 1 cut(s) 1326
Bst2UI CCWGG 1 cut(s) 57
Bst4CI ACNGT 3 cut(s) 71, 829, 891
Bst6I CTCTTC 4 cut(s) 776, 1074, 1226, 1734
BstAFI CTTAAG 1 cut(s) 1148
BstAPI GCANNNNNTGC 2 cut(s) 1186, 1955
BstAUI TGTACA 2 cut(s) 1125, 1839
BstC8I GCNNGC 2 cut(s) 823, 866
BstDEI CTNAG 5 cut(s) 199, 635, 1120, 2047, 2063
BstF5I GGATG 4 cut(s) 65, 712, 925, 1498
BstHHI GCGC 1 cut(s) 1457
BstKTI GATC 9 cut(s) 704, 806, 957, 1009, 1481, 1723, 1861, 2143, 2242
BstMAI GTCTC 2 cut(s) 1884, 2183
BstMBI GATC 9 cut(s) 701, 803, 954, 1006, 1478, 1720, 1858, 2140, 2239
BstMWI GCNNNNNNNGC 7 cut(s) 590, 818, 831, 1186, 1883, 1955, 2059
BstNI CCWGG 1 cut(s) 57
BstNSI RCATGY 2 cut(s) 1184, 1953
BstSCI CCNGG 1 cut(s) 55
BstSFI CTRYAG 1 cut(s) 1371
BstSLI GKGCMC 1 cut(s) 312
BstV1I GCAGC 5 cut(s) 799, 1439, 1607, 1723, 1995
BstV2I GAAGAC 4 cut(s) 1512, 2181, 2214, 2298
BstX2I RGATCY 3 cut(s) 1720, 1858, 2140
BstYI RGATCY 3 cut(s) 1720, 1858, 2140
BstZ17I GTATAC 1 cut(s) 1326
Bsu15I ATCGAT 1 cut(s) 957
BsuI GTATCC 1 cut(s) 1237
BsuRI GGCC 2 cut(s) 310, 1877
BsuTUI ATCGAT 1 cut(s) 957
BtsCI GGATG 4 cut(s) 65, 712, 925, 1498
BtsI GCAGTG 1 cut(s) 200
BtsIMutI CAGTG 5 cut(s) 67, 200, 825, 1128, 2000
Cac8I GCNNGC 2 cut(s) 823, 866
CciI TCATGA 2 cut(s) 1003, 1380
CfoI GCGC 1 cut(s) 1457
Cfr13I GGNCC 3 cut(s) 94, 308, 309
ClaI ATCGAT 1 cut(s) 957
Csp6I GTAC 5 cut(s) 1126, 1270, 1840, 2086, 2200
CviAII CATG 9 cut(s) 187, 1004, 1181, 1381, 1524, 1733, 1950, 2054, 2129
CviQI GTAC 5 cut(s) 1126, 1270, 1840, 2086, 2200
DdeI CTNAG 5 cut(s) 199, 635, 1120, 2047, 2063
DpnI GATC 9 cut(s) 703, 805, 956, 1008, 1480, 1722, 1860, 2142, 2241
DpnII GATC 9 cut(s) 701, 803, 954, 1006, 1478, 1720, 1858, 2140, 2239
DraI TTTAAA 2 cut(s) 166, 1803
DraIII CACNNNGTG 1 cut(s) 1753
EaeI YGGCCR 1 cut(s) 1875
Eam1104I CTCTTC 4 cut(s) 776, 1074, 1226, 1734
EarI CTCTTC 4 cut(s) 776, 1074, 1226, 1734
EciI GGCGGA 1 cut(s) 2232
Eco24I GRGCYC 2 cut(s) 27, 312
Eco31I GGTCTC 1 cut(s) 2183
Eco47I GGWCC 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 2310
Eco88I CYCGRG 1 cut(s) 253
EcoO109I RGGNCCY 2 cut(s) 94, 308
EcoRII CCWGG 1 cut(s) 55
EcoT22I ATGCAT 1 cut(s) 1529
EcoT38I GRGCYC 2 cut(s) 27, 312
FaeI CATG 9 cut(s) 190, 1007, 1184, 1384, 1527, 1736, 1953, 2057, 2132
FaqI GGGAC 2 cut(s) 107, 629
FatI CATG 9 cut(s) 186, 1003, 1180, 1380, 1523, 1732, 1949, 2053, 2128
FauI CCCGC 1 cut(s) 1912
FauNDI CATATG 2 cut(s) 876, 1924
FblI GTMKAC 3 cut(s) 669, 1325, 1919
Fnu4HI GCNGC 6 cut(s) 813, 1259, 1453, 1596, 1737, 1984
FokI GGATG 4 cut(s) 72, 699, 932, 1505
FriOI GRGCYC 2 cut(s) 27, 312
Fsp4HI GCNGC 6 cut(s) 813, 1259, 1453, 1596, 1737, 1984
FspBI CTAG 7 cut(s) 147, 275, 428, 485, 2099, 2163, 2204
GlaI GCGC 1 cut(s) 1456
GluI GCNGC 6 cut(s) 813, 1259, 1453, 1596, 1737, 1984
GsaI CCCAGC 2 cut(s) 650, 1355
HaeIII GGCC 2 cut(s) 310, 1877
HhaI GCGC 1 cut(s) 1457
Hin1II CATG 9 cut(s) 190, 1007, 1184, 1384, 1527, 1736, 1953, 2057, 2132
Hin6I GCGC 1 cut(s) 1455
HinP1I GCGC 1 cut(s) 1455
HincII GTYRAC 2 cut(s) 463, 670
HindII GTYRAC 2 cut(s) 463, 670
HinfI GANTC 6 cut(s) 256, 464, 871, 1144, 2005, 2011
HphI GGTGA 4 cut(s) 164, 383, 854, 1765
Hpy166II GTNNAC 9 cut(s) 272, 288, 463, 670, 989, 1078, 1126, 1326, 1920
Hpy188I TCNGA 7 cut(s) 381, 724, 1093, 1308, 1474, 2010, 2020
Hpy8I GTNNAC 9 cut(s) 272, 288, 463, 670, 989, 1078, 1126, 1326, 1920
HpyAV CCTTC 6 cut(s) 1442, 1469, 1582, 2025, 2224, 2351
HpyCH4III ACNGT 3 cut(s) 71, 829, 891
HpyCH4IV ACGT 1 cut(s) 1272
HpyF10VI GCNNNNNNNGC 7 cut(s) 590, 818, 831, 1186, 1883, 1955, 2059
HpyF3I CTNAG 5 cut(s) 199, 635, 1120, 2047, 2063
HpySE526I ACGT 1 cut(s) 1272
Hsp92II CATG 9 cut(s) 190, 1007, 1184, 1384, 1527, 1736, 1953, 2057, 2132
HspAI GCGC 1 cut(s) 1455
KflI GGGWCCC 1 cut(s) 94
Kzo9I GATC 9 cut(s) 701, 803, 954, 1006, 1478, 1720, 1858, 2140, 2239
LmnI GCTCC 3 cut(s) 655, 916, 1210
Lsp1109I GCAGC 5 cut(s) 799, 1439, 1607, 1723, 1995
LweI GCATC 5 cut(s) 224, 910, 949, 1305, 1758
MaeI CTAG 7 cut(s) 147, 275, 428, 485, 2099, 2163, 2204
MaeII ACGT 1 cut(s) 1272
MaeIII GTNAC 3 cut(s) 1273, 1357, 2182
MalI GATC 9 cut(s) 703, 805, 956, 1008, 1480, 1722, 1860, 2142, 2241
MboI GATC 9 cut(s) 701, 803, 954, 1006, 1478, 1720, 1858, 2140, 2239
MfeI CAATTG 2 cut(s) 963, 1082
MflI RGATCY 3 cut(s) 1720, 1858, 2140
MhlI GDGCHC 3 cut(s) 27, 312, 1215
MlsI TGGCCA 1 cut(s) 1877
MluNI TGGCCA 1 cut(s) 1877
MlyI GAGTC 2 cut(s) 265, 458
MmeI TCCRAC 5 cut(s) 283, 478, 1140, 1150, 1834
Mox20I TGGCCA 1 cut(s) 1877
Mph1103I ATGCAT 1 cut(s) 1529
MscI TGGCCA 1 cut(s) 1877
MslI CAYNNNNRTG 1 cut(s) 2133
Msp20I TGGCCA 1 cut(s) 1877
MspA1I CMGCKG 1 cut(s) 1907
MspCI CTTAAG 1 cut(s) 1148
MspR9I CCNGG 1 cut(s) 57
MunI CAATTG 2 cut(s) 963, 1082
MvaI CCWGG 1 cut(s) 57
MwoI GCNNNNNNNGC 7 cut(s) 590, 818, 831, 1186, 1883, 1955, 2059
NdeI CATATG 2 cut(s) 876, 1924
NdeII GATC 9 cut(s) 701, 803, 954, 1006, 1478, 1720, 1858, 2140, 2239
NlaIII CATG 9 cut(s) 190, 1007, 1184, 1384, 1527, 1736, 1953, 2057, 2132
NlaIV GGNNCC 6 cut(s) 95, 96, 310, 912, 1794, 2142
NsiI ATGCAT 1 cut(s) 1529
NspI RCATGY 2 cut(s) 1184, 1953
PagI TCATGA 2 cut(s) 1003, 1380
PfeI GAWTC 4 cut(s) 871, 1144, 2005, 2011
PkrI GCNGC 6 cut(s) 814, 1260, 1454, 1597, 1738, 1985
PleI GAGTC 2 cut(s) 264, 458
PpsI GAGTC 2 cut(s) 264, 458
PpuMI RGGWCCY 1 cut(s) 94
PshBI ATTAAT 1 cut(s) 156
PsiI TTATAA 1 cut(s) 2253
Psp5II RGGWCCY 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 55
PspFI CCCAGC 2 cut(s) 646, 1351
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 6 cut(s) 95, 96, 310, 912, 1794, 2142
PspOMI GGGCCC 1 cut(s) 308
PspPI GGNCC 3 cut(s) 94, 308, 309
PspPPI RGGWCCY 1 cut(s) 94
PsuI RGATCY 3 cut(s) 1720, 1858, 2140
RsaI GTAC 5 cut(s) 1127, 1271, 1841, 2087, 2201
RsaNI GTAC 5 cut(s) 1126, 1270, 1840, 2086, 2200
RseI CAYNNNNRTG 1 cut(s) 2133
SalI GTCGAC 1 cut(s) 668
SatI GCNGC 6 cut(s) 813, 1259, 1453, 1596, 1737, 1984
Sau3AI GATC 9 cut(s) 701, 803, 954, 1006, 1478, 1720, 1858, 2140, 2239
Sau96I GGNCC 3 cut(s) 94, 308, 309
SchI GAGTC 2 cut(s) 265, 458
ScrFI CCNGG 1 cut(s) 57
SduI GDGCHC 3 cut(s) 27, 312, 1215
SfaNI GCATC 5 cut(s) 224, 910, 949, 1305, 1758
SfcI CTRYAG 1 cut(s) 1371
SinI GGWCC 1 cut(s) 94
SmiI ATTTAAAT 1 cut(s) 1803
SmiMI CAYNNNNRTG 1 cut(s) 2133
SmlI CTYRAG 2 cut(s) 395, 1148
SmoI CTYRAG 2 cut(s) 395, 1148
SsiI CCGC 3 cut(s) 1259, 1905, 2243
SspI AATATT 2 cut(s) 1107, 1690
SspMI CTAG 7 cut(s) 147, 275, 428, 485, 2099, 2163, 2204
StyD4I CCNGG 1 cut(s) 55
SwaI ATTTAAAT 1 cut(s) 1803
TaaI ACNGT 3 cut(s) 71, 829, 891
TaiI ACGT 1 cut(s) 1275
TaqI TCGA 5 cut(s) 529, 669, 957, 1540, 1627
TaqII GACCGA 1 cut(s) 2207
TatI WGTACW 2 cut(s) 1125, 1839
TauI GCSGC 1 cut(s) 1261
TfiI GAWTC 4 cut(s) 871, 1144, 2005, 2011
TscAI CASTG 5 cut(s) 74, 200, 832, 1128, 2000
TseI GCWGC 5 cut(s) 812, 1452, 1595, 1736, 1983
TspGWI ACGGA 2 cut(s) 1069, 2349
TspRI CASTG 5 cut(s) 74, 200, 832, 1128, 2000
Vha464I CTTAAG 1 cut(s) 1148
VpaK11BI GGWCC 1 cut(s) 94
VspI ATTAAT 1 cut(s) 156
XapI RAATTY 5 cut(s) 508, 903, 1114, 1409, 1870
XbaI TCTAGA 1 cut(s) 427
XceI RCATGY 2 cut(s) 1184, 1953
XmiI GTMKAC 3 cut(s) 669, 1325, 1919
XspI CTAG 7 cut(s) 147, 275, 428, 485, 2099, 2163, 2204
Zsp2I ATGCAT 1 cut(s) 1529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.