Rh7AG459100

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000444
Physical Location & Seq
Reverse (-)
63175973 .. 63177408
1436 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG459100.1

Sequence Viewer

Length: 1017 bp
ATGGCTGACCTTAAATTTAATTTGCAGACTATGGTTACTTCAAAAGAATGGGAAGGCTGCCCTTATTCTCAAACATCAGAAGGATCAGCAATGCTGGATGTATTAAGTAATCACACATTTTGGTCTTCGTGCATTATGATTACTCGATTAACAAATCCACTCTTGCGAATTTTGAGAATTGTTGGTAGCCAGAAGGAGGCAGCAATTGGATATGTATTTGGAGGAATGTATCGAGCAAAAGAAACAATCAAGAGAGAACTTGTCAAGAAAGAAGAATATATGGCTTACTGGAATATTATGGATTACAGGTGGCAAAAATTATGGGATCTTCCTCTTCATGCTGCTGGTTTTTACCTTAATCCCAAGTTTTTCTATAGCATCAAGGGAGAAATGCACAAGGTGATTATGTCAAAGATGCTTGACTGCATAGAGAAATTGGTTCCAGATTTAAAAGTTCAAGATGAAATTAGCAAAGAGATAAACTTGTACAAAAATGCAGTTGGAGATCTGGGAAGGAATTTGGCCATTAGAGCCAGAGACACTCTGCTTCCTGCTGAATGGTGGTCTACATATGGCTGTGGTTTCCCGAATATGGCATGTTTTGCAGTTCGTATTCTCTGTCAAACTTGCAGCTTAATTCAGTGCAAGGAGAATCAGATTCCTTTTGACCAGTTGCACAAGACGAGGAACAGCTTAGAGCATGAACGGCTTAGTGATTTTGTCTTTGTTCGGTACAACTTGCAACTAAGACAGATGGTTCATAAGAACAAAGAGCATGAGTATGTGGATCCTATATCATTTGACAACACTAGCATTGTTGAAGACTGGGTAACAGAGACCGAAATGTACCCAGAAGACAATGAAAATACTGATTGGAAGGCACTTGATCCGCCCTTTTATAATTCAAGGCTTTTAGAACTTTCAGTTGACGAAGCTGAAGACTTGGGTTCAGGGTTTGATGATAACGAGATTTTCTTTAACGGATTGCAAGTGGTTAAAGAAGAAGGCAGAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

338

Amino Acids

39.48

Weight (kDa)

5.18

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 169 - 247 2.7e-07 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22220 AT3G22220 AT3G22220 AT3G22220 AT4G15020 AT4G15020
fragaria_vesca FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_7g22891 FvH4_7g22891 FvH4_7g22891
malus_domestica MD01G1137200.v1.1 MD02G1265900.v1.1 MD07G1202100.v1.1 MD09G1137900.v1.1 MD09G1138100.v1.1 MD17G1128400.v1.1
prunus_persica Prupe.2G058600_v2.0.a1 Prupe.2G058600_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1
pyrus_communis pycom01g15800 pycom01g15810 pycom01g15840 pycom02g22730 pycom07g18920 pycom07g18930 pycom09g05900 pycom17g12060
rosa_chinensis RchiOBHm_Chr1g0368051 RchiOBHm_Chr2g0153631 RchiOBHm_Chr2g0153641 RchiOBHm_Chr7g0237231
rosa_laevigata RLG00000001022 RLG00000020718
rosa_multiflora Rmu_sc0002117.1_g000006 Rmu_sc0004952.1_g000008 Rmu_sc0005823.1_g000001 Rmu_sc0013273.1_g000001 Rmu_sc0028071.1_g000001
rosa_roxburghii Rroxscaffold_1G00016080 Rroxscaffold_2G00094830 Rroxscaffold_4G00288900
rosa_rugosa Rorug01G0338600 Rorug01G0338700 Rorug02G0441100 Rorug02G0441200 Rorug04G0167900 Rorug07G0273200 Rorug07G0273300 Rorug07G0297100 Rorug07G0297200 Rorug07G0297300
rosa_samantha Rh1AG102500 Rh1AG102600 Rh1AG102700 Rh1AG345600 Rh1BG307900 Rh1CG323500 Rh1DG340000 Rh2AG504100 Rh2BG514800 Rh2CG490100 Rh2DG526900 Rh7AG451500 Rh7AG451700 Rh7AG459100 Rh7AG459200 Rh7BG400700 Rh7BG400800 Rh7BG421300 Rh7BG421400 Rh7BG423400 Rh7BG423500 Rh7BG423800 Rh7BG423900 Rh7CG471000 Rh7CG471100 Rh7CG471200
rosa_wichuraiana Rw1G030760 Rw2G041430 Rw5G036050 Rw7G038020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 900
AccI GTMKAC 1 cut(s) 566
AciI CCGC 1 cut(s) 890
AclWI GGATC 5 cut(s) 91, 333, 782, 795, 881
AcoI YGGCCR 1 cut(s) 522
AcsI RAATTY 4 cut(s) 14, 168, 517, 1011
AcuI CTGAAG 1 cut(s) 957
AdeI CACNNNGTG 1 cut(s) 400
AfaI GTAC 3 cut(s) 488, 734, 848
AfiI CCNNNNNNNGG 2 cut(s) 196, 592
AgsI TTSAA 4 cut(s) 42, 458, 821, 906
AluBI AGCT 3 cut(s) 633, 693, 935
AluI AGCT 3 cut(s) 633, 693, 935
Alw26I GTCTC 2 cut(s) 531, 830
AlwI GGATC 5 cut(s) 91, 333, 782, 795, 881
AoxI GGCC 1 cut(s) 522
ApeKI GCWGC 4 cut(s) 57, 200, 341, 630
ApoI RAATTY 4 cut(s) 14, 168, 517, 1011
AsuHPI GGTGA 1 cut(s) 412
BalI TGGCCA 1 cut(s) 524
BamHI GGATCC 1 cut(s) 787
BbsI GAAGAC 4 cut(s) 117, 828, 861, 945
BbvI GCAGC 4 cut(s) 44, 212, 328, 642
BccI CCATC 1 cut(s) 748
BceAI ACGGC 1 cut(s) 722
BcoDI GTCTC 2 cut(s) 531, 830
BfaI CTAG 1 cut(s) 810
BfmI CTRYAG 1 cut(s) 373
BglII AGATCT 1 cut(s) 505
BisI GCNGC 4 cut(s) 58, 201, 342, 631
BlsI GCNGC 4 cut(s) 59, 202, 343, 632
BmiI GGNNCC 2 cut(s) 441, 789
BmrI ACTGGG 1 cut(s) 835
BmsI GCATC 2 cut(s) 387, 405
BmuI ACTGGG 1 cut(s) 835
BpiI GAAGAC 4 cut(s) 117, 828, 861, 945
BsaI GGTCTC 1 cut(s) 830
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 592
Bse1I ACTGG 3 cut(s) 293, 670, 830
Bse3DI GCAATG 1 cut(s) 96
BseGI GGATG 1 cut(s) 103
BseLI CCNNNNNNNGG 2 cut(s) 196, 592
BseMI GCAATG 1 cut(s) 96
BseNI ACTGG 3 cut(s) 293, 670, 830
BseXI GCAGC 4 cut(s) 44, 212, 328, 642
BshFI GGCC 1 cut(s) 524
BslI CCNNNNNNNGG 2 cut(s) 196, 592
BsmAI GTCTC 2 cut(s) 531, 830
BsnI GGCC 1 cut(s) 524
Bso31I GGTCTC 1 cut(s) 830
Bsp1407I TGTACA 1 cut(s) 486
Bsp143I GATC 5 cut(s) 83, 325, 505, 787, 886
BspACI CCGC 1 cut(s) 890
BspANI GGCC 1 cut(s) 524
BspLI GGNNCC 2 cut(s) 441, 789
BspPI GGATC 5 cut(s) 91, 333, 782, 795, 881
BspTNI GGTCTC 1 cut(s) 830
BsrDI GCAATG 1 cut(s) 96
BsrGI TGTACA 1 cut(s) 486
BsrI ACTGG 3 cut(s) 293, 670, 830
BssMI GATC 5 cut(s) 83, 325, 505, 787, 886
Bst6I CTCTTC 1 cut(s) 339
BstAPI GCANNNNNTGC 1 cut(s) 602
BstAUI TGTACA 1 cut(s) 486
BstDEI CTNAG 3 cut(s) 694, 710, 746
BstF5I GGATG 1 cut(s) 103
BstKTI GATC 5 cut(s) 86, 328, 508, 790, 889
BstMAI GTCTC 2 cut(s) 531, 830
BstMBI GATC 5 cut(s) 83, 325, 505, 787, 886
BstMWI GCNNNNNNNGC 3 cut(s) 530, 602, 706
BstNSI RCATGY 1 cut(s) 600
BstSFI CTRYAG 1 cut(s) 373
BstV1I GCAGC 4 cut(s) 44, 212, 328, 642
BstV2I GAAGAC 4 cut(s) 117, 828, 861, 945
BstX2I RGATCY 3 cut(s) 325, 505, 787
BstYI RGATCY 3 cut(s) 325, 505, 787
BsuRI GGCC 1 cut(s) 524
BtsCI GGATG 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 647
Csp6I GTAC 3 cut(s) 487, 733, 847
CviAII CATG 4 cut(s) 338, 597, 701, 776
CviQI GTAC 3 cut(s) 487, 733, 847
DdeI CTNAG 3 cut(s) 694, 710, 746
DpnI GATC 5 cut(s) 85, 327, 507, 789, 888
DpnII GATC 5 cut(s) 83, 325, 505, 787, 886
DraI TTTAAA 1 cut(s) 450
DraIII CACNNNGTG 1 cut(s) 400
EaeI YGGCCR 1 cut(s) 522
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
EciI GGCGGA 1 cut(s) 879
Eco31I GGTCTC 1 cut(s) 830
Eco57I CTGAAG 1 cut(s) 957
FaeI CATG 4 cut(s) 341, 600, 704, 779
FatI CATG 4 cut(s) 337, 596, 700, 775
FauNDI CATATG 1 cut(s) 571
FblI GTMKAC 1 cut(s) 566
Fnu4HI GCNGC 4 cut(s) 58, 201, 342, 631
FokI GGATG 1 cut(s) 110
Fsp4HI GCNGC 4 cut(s) 58, 201, 342, 631
FspBI CTAG 1 cut(s) 810
GluI GCNGC 4 cut(s) 58, 201, 342, 631
HaeIII GGCC 1 cut(s) 524
Hin1II CATG 4 cut(s) 341, 600, 704, 779
HincII GTYRAC 1 cut(s) 928
HindII GTYRAC 1 cut(s) 928
HinfI GANTC 2 cut(s) 652, 658
HphI GGTGA 1 cut(s) 412
Hpy166II GTNNAC 2 cut(s) 567, 928
Hpy188I TCNGA 2 cut(s) 79, 657
Hpy188III TCNNGA 5 cut(s) 250, 265, 443, 458, 586
Hpy8I GTNNAC 2 cut(s) 567, 928
HpyAV CCTTC 6 cut(s) 47, 74, 187, 507, 871, 998
HpyF10VI GCNNNNNNNGC 3 cut(s) 530, 602, 706
HpyF3I CTNAG 3 cut(s) 694, 710, 746
Hsp92II CATG 4 cut(s) 341, 600, 704, 779
Kzo9I GATC 5 cut(s) 83, 325, 505, 787, 886
Lsp1109I GCAGC 4 cut(s) 44, 212, 328, 642
LweI GCATC 2 cut(s) 387, 405
MaeI CTAG 1 cut(s) 810
MaeIII GTNAC 2 cut(s) 34, 829
MalI GATC 5 cut(s) 85, 327, 507, 789, 888
MboI GATC 5 cut(s) 83, 325, 505, 787, 886
MboII GAAGA 8 cut(s) 117, 284, 320, 326, 833, 866, 950, 1013
MfeI CAATTG 1 cut(s) 204
MflI RGATCY 3 cut(s) 325, 505, 787
MlsI TGGCCA 1 cut(s) 524
MluNI TGGCCA 1 cut(s) 524
MmeI TCCRAC 1 cut(s) 481
MnlI CCTC 4 cut(s) 190, 215, 342, 678
Mox20I TGGCCA 1 cut(s) 524
MscI TGGCCA 1 cut(s) 524
MslI CAYNNNNRTG 1 cut(s) 780
Msp20I TGGCCA 1 cut(s) 524
MunI CAATTG 1 cut(s) 204
MwoI GCNNNNNNNGC 3 cut(s) 530, 602, 706
NdeI CATATG 1 cut(s) 571
NdeII GATC 5 cut(s) 83, 325, 505, 787, 886
NlaIII CATG 4 cut(s) 341, 600, 704, 779
NlaIV GGNNCC 2 cut(s) 441, 789
NspI RCATGY 1 cut(s) 600
PfeI GAWTC 2 cut(s) 652, 658
PkrI GCNGC 4 cut(s) 59, 202, 343, 632
PsiI TTATAA 1 cut(s) 900
PspN4I GGNNCC 2 cut(s) 441, 789
PsuI RGATCY 3 cut(s) 325, 505, 787
RsaI GTAC 3 cut(s) 488, 734, 848
RsaNI GTAC 3 cut(s) 487, 733, 847
RseI CAYNNNNRTG 1 cut(s) 780
SatI GCNGC 4 cut(s) 58, 201, 342, 631
Sau3AI GATC 5 cut(s) 83, 325, 505, 787, 886
SetI ASST 7 cut(s) 12, 311, 357, 402, 635, 695, 937
SfaNI GCATC 2 cut(s) 387, 405
SfcI CTRYAG 1 cut(s) 373
SmiMI CAYNNNNRTG 1 cut(s) 780
SsiI CCGC 1 cut(s) 890
SspI AATATT 1 cut(s) 295
SspMI CTAG 1 cut(s) 810
TaqI TCGA 2 cut(s) 145, 232
TaqII GACCGA 1 cut(s) 854
TatI WGTACW 1 cut(s) 486
TfiI GAWTC 2 cut(s) 652, 658
TscAI CASTG 1 cut(s) 647
TseI GCWGC 4 cut(s) 57, 200, 341, 630
TspDTI ATGAA 5 cut(s) 326, 477, 717, 749, 876
TspGWI ACGGA 1 cut(s) 996
TspRI CASTG 1 cut(s) 647
XapI RAATTY 4 cut(s) 14, 168, 517, 1011
XceI RCATGY 1 cut(s) 600
XmiI GTMKAC 1 cut(s) 566
XspI CTAG 1 cut(s) 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.