RchiOBHm_Chr2g0153641

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000444
Physical Location & Seq
Reverse (-)
70976164 .. 70976878
715 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52271

Sequence Viewer

Length: 435 bp
ATGACATCTTTGGAGGGTTTTGAGCCCATAGCTATTTCCCCACAGAAACAAGACCCAGGATGGAAACACTGTCAACTTTACATTAAAACTGGGGACCCAAAAGTTGAGTTAAAGAAGTGTTTATATTGTGGCAAAGTGTTTCAGGGTGGAGGGATTAATAGGTTTAAATCTCACCTTGCTGGTAGAAAAGGAAATGGTCCCATTTGTGATCAGGTCCCTCCTCATGTTCGAGTTTCCATGTTGCAGTGCTTAGATGAAAAAATTGCATCTTTAAGGCACAGAAAGAGTCAAATGGCTGTGAACCCGAGTCGTAGTTTTAGTGAACTAGACAATGTGTTTGCTGAAAATGAAGTTGGAGGGCCCAATTTGATGAATCAAGAGGAAGATGTGGGAATGAGTGTTGATAATGGGATTGGGGTTGGAGTGATGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

144

Amino Acids

15.8

Weight (kDa)

7.65

Isoelectric Point (pI)

36.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22220 AT3G22220 AT3G22220 AT3G22220 AT4G15020 AT4G15020
fragaria_vesca FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_7g22891 FvH4_7g22891 FvH4_7g22891
malus_domestica MD01G1137200.v1.1 MD02G1265900.v1.1 MD07G1202100.v1.1 MD09G1137900.v1.1 MD09G1138100.v1.1 MD17G1128400.v1.1
prunus_persica Prupe.2G058600_v2.0.a1 Prupe.2G058600_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1
pyrus_communis pycom01g15800 pycom01g15810 pycom01g15840 pycom02g22730 pycom07g18920 pycom07g18930 pycom09g05900 pycom17g12060
rosa_chinensis RchiOBHm_Chr1g0368051 RchiOBHm_Chr2g0153631 RchiOBHm_Chr2g0153641 RchiOBHm_Chr7g0237231
rosa_laevigata RLG00000001022 RLG00000020718
rosa_multiflora Rmu_sc0002117.1_g000006 Rmu_sc0004952.1_g000008 Rmu_sc0005823.1_g000001 Rmu_sc0013273.1_g000001 Rmu_sc0028071.1_g000001
rosa_roxburghii Rroxscaffold_1G00016080 Rroxscaffold_2G00094830 Rroxscaffold_4G00288900
rosa_rugosa Rorug01G0338600 Rorug01G0338700 Rorug02G0441100 Rorug02G0441200 Rorug04G0167900 Rorug07G0273200 Rorug07G0273300 Rorug07G0297100 Rorug07G0297200 Rorug07G0297300
rosa_samantha Rh1AG102500 Rh1AG102600 Rh1AG102700 Rh1AG345600 Rh1BG307900 Rh1CG323500 Rh1DG340000 Rh2AG504100 Rh2BG514800 Rh2CG490100 Rh2DG526900 Rh7AG451500 Rh7AG451700 Rh7AG459100 Rh7AG459200 Rh7BG400700 Rh7BG400800 Rh7BG421300 Rh7BG421400 Rh7BG423400 Rh7BG423500 Rh7BG423800 Rh7BG423900 Rh7CG471000 Rh7CG471100 Rh7CG471200
rosa_wichuraiana Rw1G030760 Rw2G041430 Rw5G036050 Rw7G038020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AjnI CCWGG 1 cut(s) 55
AjuI GAANNNNNNNTTGG 2 cut(s) 336, 368
AluBI AGCT 1 cut(s) 32
AluI AGCT 1 cut(s) 32
Ama87I CYCGRG 1 cut(s) 304
AoxI GGCC 1 cut(s) 359
ApaI GGGCCC 1 cut(s) 363
ArsI GACNNNNNNTTYG 2 cut(s) 320, 352
AseI ATTAAT 1 cut(s) 156
AspS9I GGNCC 5 cut(s) 94, 197, 214, 359, 360
AsuHPI GGTGA 1 cut(s) 164
AvaI CYCGRG 1 cut(s) 304
AvaII GGWCC 3 cut(s) 94, 197, 214
BaeGI GKGCMC 1 cut(s) 363
BanII GRGCYC 2 cut(s) 27, 363
BccI CCATC 2 cut(s) 54, 421
BciT130I CCWGG 1 cut(s) 57
BclI TGATCA 1 cut(s) 208
BfaI CTAG 2 cut(s) 326, 433
Bme1390I CCNGG 1 cut(s) 57
Bme18I GGWCC 3 cut(s) 94, 197, 214
BmeT110I CYCGRG 1 cut(s) 304
BmgT120I GGNCC 5 cut(s) 94, 197, 214, 359, 360
BmiI GGNNCC 5 cut(s) 95, 96, 199, 216, 361
BmrFI CCNGG 1 cut(s) 57
BmrI ACTGGG 1 cut(s) 99
BmsI GCATC 1 cut(s) 275
BmuI ACTGGG 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 55
BsaXI ACNNNNNCTCC 1 cut(s) 414
Bse1I ACTGG 1 cut(s) 94
BseBI CCWGG 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 55
BseGI GGATG 1 cut(s) 65
BseNI ACTGG 1 cut(s) 94
BseRI GAGGAG 1 cut(s) 210
BseSI GKGCMC 1 cut(s) 363
BshFI GGCC 1 cut(s) 361
BsiHKCI CYCGRG 1 cut(s) 304
BslFI GGGAC 3 cut(s) 107, 183, 200
BsmFI GGGAC 3 cut(s) 107, 183, 200
BsnI GGCC 1 cut(s) 361
BsoBI CYCGRG 1 cut(s) 304
Bsp120I GGGCCC 1 cut(s) 359
Bsp1286I GDGCHC 2 cut(s) 27, 363
Bsp143I GATC 1 cut(s) 208
BspANI GGCC 1 cut(s) 361
BspLI GGNNCC 5 cut(s) 95, 96, 199, 216, 361
BsrI ACTGG 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 1 cut(s) 208
Bst2UI CCWGG 1 cut(s) 57
Bst4CI ACNGT 1 cut(s) 71
BstDEI CTNAG 1 cut(s) 250
BstF5I GGATG 1 cut(s) 65
BstKTI GATC 1 cut(s) 211
BstMBI GATC 1 cut(s) 208
BstNI CCWGG 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 55
BstSLI GKGCMC 1 cut(s) 363
BsuRI GGCC 1 cut(s) 361
BtsCI GGATG 1 cut(s) 65
BtsI GCAGTG 1 cut(s) 251
BtsIMutI CAGTG 2 cut(s) 67, 251
Cfr13I GGNCC 5 cut(s) 94, 197, 214, 359, 360
CviAII CATG 2 cut(s) 224, 238
CviJI RGCY 4 cut(s) 25, 32, 296, 361
CviKI_1 RGCY 4 cut(s) 25, 32, 296, 361
DdeI CTNAG 1 cut(s) 250
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
DraI TTTAAA 1 cut(s) 166
Eco24I GRGCYC 2 cut(s) 27, 363
Eco47I GGWCC 3 cut(s) 94, 197, 214
Eco88I CYCGRG 1 cut(s) 304
EcoO109I RGGNCCY 3 cut(s) 94, 214, 359
EcoRII CCWGG 1 cut(s) 55
EcoT38I GRGCYC 2 cut(s) 27, 363
FaeI CATG 2 cut(s) 227, 241
FaiI YATR 4 cut(s) 29, 124, 225, 239
FaqI GGGAC 3 cut(s) 107, 183, 200
FatI CATG 2 cut(s) 223, 237
FbaI TGATCA 1 cut(s) 208
FokI GGATG 1 cut(s) 72
FriOI GRGCYC 2 cut(s) 27, 363
FspBI CTAG 2 cut(s) 326, 433
HaeIII GGCC 1 cut(s) 361
Hin1II CATG 2 cut(s) 227, 241
HincII GTYRAC 1 cut(s) 74
HindII GTYRAC 1 cut(s) 74
HinfI GANTC 3 cut(s) 286, 307, 373
HphI GGTGA 1 cut(s) 164
Hpy166II GTNNAC 3 cut(s) 74, 301, 323
Hpy188III TCNNGA 1 cut(s) 377
Hpy8I GTNNAC 3 cut(s) 74, 301, 323
HpyCH4III ACNGT 1 cut(s) 71
HpyCH4V TGCA 2 cut(s) 244, 266
HpyF3I CTNAG 1 cut(s) 250
Hsp92II CATG 2 cut(s) 227, 241
KflI GGGWCCC 1 cut(s) 94
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 1 cut(s) 208
LpnPI CCDG 6 cut(s) 42, 69, 75, 128, 165, 197
LweI GCATC 1 cut(s) 275
MaeI CTAG 2 cut(s) 326, 433
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MboII GAAGA 1 cut(s) 395
MhlI GDGCHC 2 cut(s) 27, 363
MluCI AATT 2 cut(s) 261, 364
MlyI GAGTC 2 cut(s) 295, 316
MmeI TCCRAC 2 cut(s) 334, 400
MnlI CCTC 6 cut(s) 7, 143, 228, 231, 350, 373
MseI TTAA 5 cut(s) 84, 110, 156, 165, 272
MspR9I CCNGG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 57
NdeII GATC 1 cut(s) 208
NlaIII CATG 2 cut(s) 227, 241
NlaIV GGNNCC 5 cut(s) 95, 96, 199, 216, 361
PfeI GAWTC 1 cut(s) 373
PleI GAGTC 2 cut(s) 294, 315
PpsI GAGTC 2 cut(s) 294, 315
PpuMI RGGWCCY 2 cut(s) 94, 214
PshBI ATTAAT 1 cut(s) 156
Psp5II RGGWCCY 2 cut(s) 94, 214
Psp6I CCWGG 1 cut(s) 55
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 5 cut(s) 95, 96, 199, 216, 361
PspOMI GGGCCC 1 cut(s) 359
PspPI GGNCC 5 cut(s) 94, 197, 214, 359, 360
PspPPI RGGWCCY 2 cut(s) 94, 214
SaqAI TTAA 5 cut(s) 84, 110, 156, 165, 272
Sau3AI GATC 1 cut(s) 208
Sau96I GGNCC 5 cut(s) 94, 197, 214, 359, 360
SchI GAGTC 2 cut(s) 295, 316
ScrFI CCNGG 1 cut(s) 57
SduI GDGCHC 2 cut(s) 27, 363
SetI ASST 4 cut(s) 34, 164, 177, 216
SfaNI GCATC 1 cut(s) 275
SinI GGWCC 3 cut(s) 94, 197, 214
Sse9I AATT 2 cut(s) 261, 364
SspMI CTAG 2 cut(s) 326, 433
StyD4I CCNGG 1 cut(s) 55
TaaI ACNGT 1 cut(s) 71
TaqI TCGA 1 cut(s) 229
TasI AATT 2 cut(s) 261, 364
TfiI GAWTC 1 cut(s) 373
Tru1I TTAA 5 cut(s) 84, 110, 156, 165, 272
Tru9I TTAA 5 cut(s) 84, 110, 156, 165, 272
TscAI CASTG 2 cut(s) 74, 251
TspDTI ATGAA 3 cut(s) 270, 363, 386
TspRI CASTG 2 cut(s) 74, 251
VpaK11BI GGWCC 3 cut(s) 94, 197, 214
VspI ATTAAT 1 cut(s) 156
XspI CTAG 2 cut(s) 326, 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.