Rh7CG471200

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000444
Physical Location & Seq
Forward (+)
63171947 .. 63172979
1033 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG471200.1

Sequence Viewer

Length: 579 bp
ATGCACAAGGTGATTATGTCAAAGATGCTTGACTGCATAGAGAAATTGGTTCCAGATTTAAAAGTTCAAGATGAAATCAGCAAAGAGATAAACTTGTACAAAAATGCTGTTGGAGATCTGGGGAGGAATTTGGCCATTAGAGCCAGAGACACTCTGCTTCCCGCTGAATGGTGGTCTACATATGGCGGTGGTTGCCCAAATATGGTATGTTTTGCAGTTCGTATTCTCTGTCAAACTTGCAGCTTAATTCAGTGCAAGGAGAATCAGATTCCTTTTGACCAGTTGCACAAGACGAGGAACAGCTTAGAGCGTGAACGGCTGAGTGATTTTGTCTTTCATGAGTATGTGGATCCTATATCATTTGACAACACTAGCATTGTTGAAGACTGGGTAACAGAGACCGAAATGTACCGAGAAGACAATGAAAATACTGATTGGAAGGCACTTGATCCGCCCTCTTATAATTCGAGGCTTTTAGAACTTTCAGTTGATGAAGCTGAAGACTTGGGTTCAGGGTTTGATGACAACGAGATTTTCTTTAACGGATTGCAGGTGGTTAAAGAAGAAGGCAGAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

192

Amino Acids

22.16

Weight (kDa)

4.52

Isoelectric Point (pI)

36.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 38 - 112 2.6e-06 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22220 AT3G22220 AT3G22220 AT3G22220 AT4G15020 AT4G15020
fragaria_vesca FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_7g22891 FvH4_7g22891 FvH4_7g22891
malus_domestica MD01G1137200.v1.1 MD02G1265900.v1.1 MD07G1202100.v1.1 MD09G1137900.v1.1 MD09G1138100.v1.1 MD17G1128400.v1.1
prunus_persica Prupe.2G058600_v2.0.a1 Prupe.2G058600_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1
pyrus_communis pycom01g15800 pycom01g15810 pycom01g15840 pycom02g22730 pycom07g18920 pycom07g18930 pycom09g05900 pycom17g12060
rosa_chinensis RchiOBHm_Chr1g0368051 RchiOBHm_Chr2g0153631 RchiOBHm_Chr2g0153641 RchiOBHm_Chr7g0237231
rosa_laevigata RLG00000001022 RLG00000020718
rosa_multiflora Rmu_sc0002117.1_g000006 Rmu_sc0004952.1_g000008 Rmu_sc0005823.1_g000001 Rmu_sc0013273.1_g000001 Rmu_sc0028071.1_g000001
rosa_roxburghii Rroxscaffold_1G00016080 Rroxscaffold_2G00094830 Rroxscaffold_4G00288900
rosa_rugosa Rorug01G0338600 Rorug01G0338700 Rorug02G0441100 Rorug02G0441200 Rorug04G0167900 Rorug07G0273200 Rorug07G0273300 Rorug07G0297100 Rorug07G0297200 Rorug07G0297300
rosa_samantha Rh1AG102500 Rh1AG102600 Rh1AG102700 Rh1AG345600 Rh1BG307900 Rh1CG323500 Rh1DG340000 Rh2AG504100 Rh2BG514800 Rh2CG490100 Rh2DG526900 Rh7AG451500 Rh7AG451700 Rh7AG459100 Rh7AG459200 Rh7BG400700 Rh7BG400800 Rh7BG421300 Rh7BG421400 Rh7BG423400 Rh7BG423500 Rh7BG423800 Rh7BG423900 Rh7CG471000 Rh7CG471100 Rh7CG471200
rosa_wichuraiana Rw1G030760 Rw2G041430 Rw5G036050 Rw7G038020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 462
AarI CACCTGC 1 cut(s) 541
Acc36I ACCTGC 1 cut(s) 541
AccI GTMKAC 1 cut(s) 176
AciI CCGC 3 cut(s) 162, 186, 452
AclWI GGATC 3 cut(s) 344, 357, 443
AcoI YGGCCR 1 cut(s) 132
AcsI RAATTY 1 cut(s) 127
AcuI CTGAAG 1 cut(s) 519
AdeI CACNNNGTG 1 cut(s) 10
AfaI GTAC 2 cut(s) 98, 410
AfiI CCNNNNNNNGG 2 cut(s) 168, 202
AgsI TTSAA 2 cut(s) 68, 383
AluBI AGCT 3 cut(s) 243, 303, 497
AluI AGCT 3 cut(s) 243, 303, 497
Alw26I GTCTC 2 cut(s) 141, 392
AlwI GGATC 3 cut(s) 344, 357, 443
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 1 cut(s) 240
ApoI RAATTY 1 cut(s) 127
AsuHPI GGTGA 1 cut(s) 22
BalI TGGCCA 1 cut(s) 134
BamHI GGATCC 1 cut(s) 349
BbsI GAAGAC 3 cut(s) 390, 423, 507
BbvI GCAGC 1 cut(s) 252
BceAI ACGGC 1 cut(s) 332
BcoDI GTCTC 2 cut(s) 141, 392
BfaI CTAG 1 cut(s) 372
BfuAI ACCTGC 1 cut(s) 541
BglII AGATCT 1 cut(s) 115
BisI GCNGC 1 cut(s) 241
BlsI GCNGC 1 cut(s) 242
BmiI GGNNCC 2 cut(s) 51, 351
BmrI ACTGGG 1 cut(s) 397
BmsI GCATC 1 cut(s) 15
BmuI ACTGGG 1 cut(s) 397
BpiI GAAGAC 3 cut(s) 390, 423, 507
BsaI GGTCTC 1 cut(s) 392
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 202
Bse1I ACTGG 2 cut(s) 280, 392
BseLI CCNNNNNNNGG 2 cut(s) 168, 202
BseMII CTCAG 1 cut(s) 311
BseNI ACTGG 2 cut(s) 280, 392
BseXI GCAGC 1 cut(s) 252
BshFI GGCC 1 cut(s) 134
BslI CCNNNNNNNGG 2 cut(s) 168, 202
BsmAI GTCTC 2 cut(s) 141, 392
BsnI GGCC 1 cut(s) 134
Bso31I GGTCTC 1 cut(s) 392
Bsp1407I TGTACA 1 cut(s) 96
Bsp143I GATC 3 cut(s) 115, 349, 448
BspACI CCGC 3 cut(s) 162, 186, 452
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 1 cut(s) 312
BspHI TCATGA 1 cut(s) 337
BspLI GGNNCC 2 cut(s) 51, 351
BspMI ACCTGC 1 cut(s) 541
BspPI GGATC 3 cut(s) 344, 357, 443
BspTNI GGTCTC 1 cut(s) 392
BsrGI TGTACA 1 cut(s) 96
BsrI ACTGG 2 cut(s) 280, 392
BssMI GATC 3 cut(s) 115, 349, 448
BstAUI TGTACA 1 cut(s) 96
BstDEI CTNAG 2 cut(s) 304, 320
BstKTI GATC 3 cut(s) 118, 352, 451
BstMAI GTCTC 2 cut(s) 141, 392
BstMBI GATC 3 cut(s) 115, 349, 448
BstMWI GCNNNNNNNGC 3 cut(s) 140, 192, 316
BstV1I GCAGC 1 cut(s) 252
BstV2I GAAGAC 3 cut(s) 390, 423, 507
BstX2I RGATCY 2 cut(s) 115, 349
BstYI RGATCY 2 cut(s) 115, 349
BsuRI GGCC 1 cut(s) 134
BtsIMutI CAGTG 1 cut(s) 257
BveI ACCTGC 1 cut(s) 541
CciI TCATGA 1 cut(s) 337
Csp6I GTAC 2 cut(s) 97, 409
CviAII CATG 1 cut(s) 338
CviJI RGCY 7 cut(s) 134, 143, 243, 303, 319, 472, 497
CviKI_1 RGCY 7 cut(s) 134, 143, 243, 303, 319, 472, 497
CviQI GTAC 2 cut(s) 97, 409
DdeI CTNAG 2 cut(s) 304, 320
DpnI GATC 3 cut(s) 117, 351, 450
DpnII GATC 3 cut(s) 115, 349, 448
DraI TTTAAA 1 cut(s) 60
DraIII CACNNNGTG 1 cut(s) 10
EaeI YGGCCR 1 cut(s) 132
EciI GGCGGA 1 cut(s) 441
Eco31I GGTCTC 1 cut(s) 392
Eco57I CTGAAG 1 cut(s) 519
FaeI CATG 1 cut(s) 341
FatI CATG 1 cut(s) 337
FauI CCCGC 1 cut(s) 169
FauNDI CATATG 1 cut(s) 181
FblI GTMKAC 1 cut(s) 176
Fnu4HI GCNGC 1 cut(s) 241
Fsp4HI GCNGC 1 cut(s) 241
FspBI CTAG 1 cut(s) 372
GluI GCNGC 1 cut(s) 241
HaeIII GGCC 1 cut(s) 134
Hin1II CATG 1 cut(s) 341
HinfI GANTC 2 cut(s) 262, 268
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 2 cut(s) 177, 314
Hpy188I TCNGA 1 cut(s) 267
Hpy188III TCNNGA 3 cut(s) 53, 68, 338
Hpy8I GTNNAC 2 cut(s) 177, 314
HpyAV CCTTC 2 cut(s) 433, 560
HpyCH4V TGCA 7 cut(s) 4, 36, 215, 240, 255, 286, 550
HpyF10VI GCNNNNNNNGC 3 cut(s) 140, 192, 316
HpyF3I CTNAG 2 cut(s) 304, 320
Hsp92II CATG 1 cut(s) 341
Kzo9I GATC 3 cut(s) 115, 349, 448
LpnPI CCDG 7 cut(s) 66, 104, 157, 293, 373, 498, 536
Lsp1109I GCAGC 1 cut(s) 252
LweI GCATC 1 cut(s) 15
MaeI CTAG 1 cut(s) 372
MaeIII GTNAC 1 cut(s) 391
MalI GATC 3 cut(s) 117, 351, 450
MboI GATC 3 cut(s) 115, 349, 448
MboII GAAGA 4 cut(s) 395, 428, 512, 575
MflI RGATCY 2 cut(s) 115, 349
MlsI TGGCCA 1 cut(s) 134
MluCI AATT 4 cut(s) 44, 127, 246, 463
MluNI TGGCCA 1 cut(s) 134
MmeI TCCRAC 1 cut(s) 91
MnlI CCTC 4 cut(s) 117, 288, 462, 466
Mox20I TGGCCA 1 cut(s) 134
MscI TGGCCA 1 cut(s) 134
MseI TTAA 5 cut(s) 59, 245, 540, 558, 577
MslI CAYNNNNRTG 1 cut(s) 342
Msp20I TGGCCA 1 cut(s) 134
MspA1I CMGCKG 1 cut(s) 164
MwoI GCNNNNNNNGC 3 cut(s) 140, 192, 316
NdeI CATATG 1 cut(s) 181
NdeII GATC 3 cut(s) 115, 349, 448
NlaIII CATG 1 cut(s) 341
NlaIV GGNNCC 2 cut(s) 51, 351
PagI TCATGA 1 cut(s) 337
PaqCI CACCTGC 1 cut(s) 541
PfeI GAWTC 2 cut(s) 262, 268
PkrI GCNGC 1 cut(s) 242
PsiI TTATAA 1 cut(s) 462
PspN4I GGNNCC 2 cut(s) 51, 351
PsuI RGATCY 2 cut(s) 115, 349
RsaI GTAC 2 cut(s) 98, 410
RsaNI GTAC 2 cut(s) 97, 409
RseI CAYNNNNRTG 1 cut(s) 342
SaqAI TTAA 5 cut(s) 59, 245, 540, 558, 577
SatI GCNGC 1 cut(s) 241
Sau3AI GATC 3 cut(s) 115, 349, 448
SetI ASST 5 cut(s) 12, 245, 305, 499, 555
SfaNI GCATC 1 cut(s) 15
SmiMI CAYNNNNRTG 1 cut(s) 342
Sse9I AATT 4 cut(s) 44, 127, 246, 463
SsiI CCGC 3 cut(s) 162, 186, 452
SspMI CTAG 1 cut(s) 372
TaqI TCGA 1 cut(s) 467
TaqII GACCGA 1 cut(s) 416
TasI AATT 4 cut(s) 44, 127, 246, 463
TatI WGTACW 1 cut(s) 96
TfiI GAWTC 2 cut(s) 262, 268
Tru1I TTAA 5 cut(s) 59, 245, 540, 558, 577
Tru9I TTAA 5 cut(s) 59, 245, 540, 558, 577
TscAI CASTG 1 cut(s) 257
TseI GCWGC 1 cut(s) 240
TspDTI ATGAA 4 cut(s) 87, 326, 438, 507
TspGWI ACGGA 1 cut(s) 558
TspRI CASTG 1 cut(s) 257
XapI RAATTY 1 cut(s) 127
XmiI GTMKAC 1 cut(s) 176
XspI CTAG 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.