Rh7CG471100

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000444
Physical Location & Seq
Forward (+)
63170821 .. 63171039
219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG471100.1

Sequence Viewer

Length: 219 bp
ATGGCTGCCAATGCTGGCACTGCTGGCAGTAATGGTGAAGTTGAAAAGGCGAACTGTCAGCAGATTCATATGGCAATAGGACGGTTTCTATATGAAATTCAGGCTCCTCTGGATGCCGTGAAGAACTCTGTTTATTTTCAGCCAATGATTGATGCAATTGCTTCTGGGGGAATGGAGAGTAAACCACCCTCGTATCATGATCTTCAGGGTTGGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

72

Amino Acids

7.74

Weight (kDa)

5.01

Isoelectric Point (pI)

33.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22220 AT3G22220 AT3G22220 AT3G22220 AT4G15020 AT4G15020
fragaria_vesca FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_7g22891 FvH4_7g22891 FvH4_7g22891
malus_domestica MD01G1137200.v1.1 MD02G1265900.v1.1 MD07G1202100.v1.1 MD09G1137900.v1.1 MD09G1138100.v1.1 MD17G1128400.v1.1
prunus_persica Prupe.2G058600_v2.0.a1 Prupe.2G058600_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1
pyrus_communis pycom01g15800 pycom01g15810 pycom01g15840 pycom02g22730 pycom07g18920 pycom07g18930 pycom09g05900 pycom17g12060
rosa_chinensis RchiOBHm_Chr1g0368051 RchiOBHm_Chr2g0153631 RchiOBHm_Chr2g0153641 RchiOBHm_Chr7g0237231
rosa_laevigata RLG00000001022 RLG00000020718
rosa_multiflora Rmu_sc0002117.1_g000006 Rmu_sc0004952.1_g000008 Rmu_sc0005823.1_g000001 Rmu_sc0013273.1_g000001 Rmu_sc0028071.1_g000001
rosa_roxburghii Rroxscaffold_1G00016080 Rroxscaffold_2G00094830 Rroxscaffold_4G00288900
rosa_rugosa Rorug01G0338600 Rorug01G0338700 Rorug02G0441100 Rorug02G0441200 Rorug04G0167900 Rorug07G0273200 Rorug07G0273300 Rorug07G0297100 Rorug07G0297200 Rorug07G0297300
rosa_samantha Rh1AG102500 Rh1AG102600 Rh1AG102700 Rh1AG345600 Rh1BG307900 Rh1CG323500 Rh1DG340000 Rh2AG504100 Rh2BG514800 Rh2CG490100 Rh2DG526900 Rh7AG451500 Rh7AG451700 Rh7AG459100 Rh7AG459200 Rh7BG400700 Rh7BG400800 Rh7BG421300 Rh7BG421400 Rh7BG423400 Rh7BG423500 Rh7BG423800 Rh7BG423900 Rh7CG471000 Rh7CG471100 Rh7CG471200
rosa_wichuraiana Rw1G030760 Rw2G041430 Rw5G036050 Rw7G038020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 96
AcuI CTGAAG 1 cut(s) 188
AgsI TTSAA 1 cut(s) 44
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 96
AsuHPI GGTGA 1 cut(s) 47
BaeI ACNNNNGTAYC 2 cut(s) 176, 209
BceAI ACGGC 1 cut(s) 101
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 105
BmsI GCATC 2 cut(s) 103, 142
BseGI GGATG 1 cut(s) 118
BseRI GAGGAG 1 cut(s) 96
Bsp143I GATC 1 cut(s) 199
BspHI TCATGA 1 cut(s) 196
BspLI GGNNCC 1 cut(s) 105
BssMI GATC 1 cut(s) 199
Bst4CI ACNGT 2 cut(s) 56, 84
BstC8I GCNNGC 2 cut(s) 16, 25
BstF5I GGATG 1 cut(s) 118
BstKTI GATC 1 cut(s) 202
BstMBI GATC 1 cut(s) 199
BstMWI GCNNNNNNNGC 3 cut(s) 11, 20, 24
BtsCI GGATG 1 cut(s) 118
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 18
Cac8I GCNNGC 2 cut(s) 16, 25
CciI TCATGA 1 cut(s) 196
CviAII CATG 1 cut(s) 197
CviJI RGCY 3 cut(s) 5, 104, 142
CviKI_1 RGCY 3 cut(s) 5, 104, 142
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
Eco57I CTGAAG 1 cut(s) 188
FaeI CATG 1 cut(s) 200
FaiI YATR 6 cut(s) 69, 71, 91, 93, 198, 217
FatI CATG 1 cut(s) 196
FauNDI CATATG 1 cut(s) 69
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 125
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
Hin1II CATG 1 cut(s) 200
HinfI GANTC 1 cut(s) 64
HphI GGTGA 1 cut(s) 47
Hpy166II GTNNAC 1 cut(s) 182
Hpy188III TCNNGA 2 cut(s) 110, 197
Hpy8I GTNNAC 1 cut(s) 182
HpyCH4III ACNGT 2 cut(s) 56, 84
HpyCH4V TGCA 1 cut(s) 155
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 20, 24
Hsp92II CATG 1 cut(s) 200
Kzo9I GATC 1 cut(s) 199
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 5 cut(s) 9, 86, 95, 150, 191
LweI GCATC 2 cut(s) 103, 142
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MboII GAAGA 2 cut(s) 133, 194
MfeI CAATTG 1 cut(s) 156
MluCI AATT 2 cut(s) 96, 156
MmeI TCCRAC 1 cut(s) 191
MnlI CCTC 2 cut(s) 117, 199
MunI CAATTG 1 cut(s) 156
MwoI GCNNNNNNNGC 3 cut(s) 11, 20, 24
NdeI CATATG 1 cut(s) 69
NdeII GATC 1 cut(s) 199
NlaIII CATG 1 cut(s) 200
NlaIV GGNNCC 1 cut(s) 105
PagI TCATGA 1 cut(s) 196
PfeI GAWTC 1 cut(s) 64
PkrI GCNGC 1 cut(s) 7
PspN4I GGNNCC 1 cut(s) 105
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 1 cut(s) 199
SfaNI GCATC 2 cut(s) 103, 142
SgeI CNNG 8 cut(s) 27, 36, 113, 122, 130, 177, 202, 209
Sse9I AATT 2 cut(s) 96, 156
TaaI ACNGT 2 cut(s) 56, 84
TasI AATT 2 cut(s) 96, 156
TfiI GAWTC 1 cut(s) 64
TscAI CASTG 1 cut(s) 25
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 2 cut(s) 56, 108
TspRI CASTG 1 cut(s) 25
XapI RAATTY 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.