Rh7BG423500

Protein of unknown function (DUF 659)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Forward (+)
48221503 .. 48222018
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG423500.1

Sequence Viewer

Length: 516 bp
ATGGATACATTCCCTACGCTGTACTGTTCTCCCTGTGCTGCTGCTTGCATAAATTTGATACTTGAGGATTTTGGAAAACTTGAGTGGATAAAATCTATTATAGAACAGGCTAGATCTGTTACAAGATTTATCTATAAACACGTCGTCATTCTGAATATGATGCGGAGGTATACTTTTGGAAATGACATTGTGAAGCTGGGAGTAACTCGGTTTGCTACAGATATCATGACTTTGAAACAAATGGCTGACCTTAAATTTAATTTGCAGACTATGGTTGCTTCAAAAGAATGGGAAGGCTGCACTTATTCTCAAACATCAGAAGCATCAGCAATGCTGGATGTATTAAGTAATCACACATTTTGGTCTTCGTGCATTATGATTACTCGATTAACAAATCCACTATTGCGAGTTTTGAGAATTGTTGGAAGCCAGAAGGAGGCAGCAATGGGATATGTATTACAATCACGAGAGAAGTTGTCAAGAAAGAAGAATATATGGCTTACTGGAATATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

171

Amino Acids

19.59

Weight (kDa)

9.3

Isoelectric Point (pI)

41.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF659 PF04937 1 - 40 1.5e-11 Domain of unknown function (DUF659)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22220 AT3G22220 AT3G22220 AT3G22220 AT4G15020 AT4G15020
fragaria_vesca FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_7g22891 FvH4_7g22891 FvH4_7g22891
malus_domestica MD01G1137200.v1.1 MD02G1265900.v1.1 MD07G1202100.v1.1 MD09G1137900.v1.1 MD09G1138100.v1.1 MD17G1128400.v1.1
prunus_persica Prupe.2G058600_v2.0.a1 Prupe.2G058600_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1
pyrus_communis pycom01g15800 pycom01g15810 pycom01g15840 pycom02g22730 pycom07g18920 pycom07g18930 pycom09g05900 pycom17g12060
rosa_chinensis RchiOBHm_Chr1g0368051 RchiOBHm_Chr2g0153631 RchiOBHm_Chr2g0153641 RchiOBHm_Chr7g0237231
rosa_laevigata RLG00000001022 RLG00000020718
rosa_multiflora Rmu_sc0002117.1_g000006 Rmu_sc0004952.1_g000008 Rmu_sc0005823.1_g000001 Rmu_sc0013273.1_g000001 Rmu_sc0028071.1_g000001
rosa_roxburghii Rroxscaffold_1G00016080 Rroxscaffold_2G00094830 Rroxscaffold_4G00288900
rosa_rugosa Rorug01G0338600 Rorug01G0338700 Rorug02G0441100 Rorug02G0441200 Rorug04G0167900 Rorug07G0273200 Rorug07G0273300 Rorug07G0297100 Rorug07G0297200 Rorug07G0297300
rosa_samantha Rh1AG102500 Rh1AG102600 Rh1AG102700 Rh1AG345600 Rh1BG307900 Rh1CG323500 Rh1DG340000 Rh2AG504100 Rh2BG514800 Rh2CG490100 Rh2DG526900 Rh7AG451500 Rh7AG451700 Rh7AG459100 Rh7AG459200 Rh7BG400700 Rh7BG400800 Rh7BG421300 Rh7BG421400 Rh7BG423400 Rh7BG423500 Rh7BG423800 Rh7BG423900 Rh7CG471000 Rh7CG471100 Rh7CG471200
rosa_wichuraiana Rw1G030760 Rw2G041430 Rw5G036050 Rw7G038020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 170
AciI CCGC 1 cut(s) 163
AcsI RAATTY 2 cut(s) 52, 254
AfaI GTAC 1 cut(s) 23
AfiI CCNNNNNNNGG 1 cut(s) 436
AflIII ACRYGT 1 cut(s) 139
AgsI TTSAA 2 cut(s) 235, 282
AjiI CACGTC 1 cut(s) 142
AluBI AGCT 1 cut(s) 196
AluI AGCT 1 cut(s) 196
ApeKI GCWGC 4 cut(s) 38, 41, 297, 440
ApoI RAATTY 2 cut(s) 52, 254
BauI CACGAG 1 cut(s) 465
BbsI GAAGAC 1 cut(s) 357
BbvI GCAGC 4 cut(s) 25, 28, 284, 452
BfaI CTAG 1 cut(s) 111
BfmI CTRYAG 1 cut(s) 216
BglII AGATCT 1 cut(s) 113
BisI GCNGC 4 cut(s) 39, 42, 298, 441
BlsI GCNGC 4 cut(s) 40, 43, 299, 442
BmgBI CACGTC 1 cut(s) 142
BmsI GCATC 2 cut(s) 150, 332
BpiI GAAGAC 1 cut(s) 357
BpuEI CTTGAG 2 cut(s) 83, 101
Bsc4I CCNNNNNNNGG 1 cut(s) 436
Bse1I ACTGG 1 cut(s) 508
Bse3DI GCAATG 2 cut(s) 336, 450
BseGI GGATG 1 cut(s) 343
BseLI CCNNNNNNNGG 1 cut(s) 436
BseMI GCAATG 2 cut(s) 336, 450
BseNI ACTGG 1 cut(s) 508
BseXI GCAGC 4 cut(s) 25, 28, 284, 452
BseYI CCCAGC 1 cut(s) 196
BsgI GTGCAG 1 cut(s) 283
BslI CCNNNNNNNGG 1 cut(s) 436
Bsp143I GATC 1 cut(s) 113
BspACI CCGC 1 cut(s) 163
BspHI TCATGA 1 cut(s) 225
BsrDI GCAATG 2 cut(s) 336, 450
BsrI ACTGG 1 cut(s) 508
BssMI GATC 1 cut(s) 113
BssNAI GTATAC 1 cut(s) 171
BssSI CACGAG 1 cut(s) 465
Bst1107I GTATAC 1 cut(s) 171
Bst2BI CACGAG 1 cut(s) 465
Bst4CI ACNGT 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 46
BstF5I GGATG 1 cut(s) 343
BstKTI GATC 1 cut(s) 116
BstMBI GATC 1 cut(s) 113
BstSFI CTRYAG 1 cut(s) 216
BstV1I GCAGC 4 cut(s) 25, 28, 284, 452
BstV2I GAAGAC 1 cut(s) 357
BstX2I RGATCY 1 cut(s) 113
BstYI RGATCY 1 cut(s) 113
BstZ17I GTATAC 1 cut(s) 171
BtrI CACGTC 1 cut(s) 142
BtsCI GGATG 1 cut(s) 343
Cac8I GCNNGC 1 cut(s) 46
CciI TCATGA 1 cut(s) 225
Csp6I GTAC 1 cut(s) 22
CviAII CATG 1 cut(s) 226
CviJI RGCY 6 cut(s) 110, 196, 245, 297, 429, 499
CviKI_1 RGCY 6 cut(s) 110, 196, 245, 297, 429, 499
CviQI GTAC 1 cut(s) 22
DpnI GATC 1 cut(s) 115
DpnII GATC 1 cut(s) 113
Eco32I GATATC 1 cut(s) 223
EcoRV GATATC 1 cut(s) 223
FaeI CATG 1 cut(s) 229
FatI CATG 1 cut(s) 225
FblI GTMKAC 1 cut(s) 170
Fnu4HI GCNGC 4 cut(s) 39, 42, 298, 441
FokI GGATG 1 cut(s) 350
Fsp4HI GCNGC 4 cut(s) 39, 42, 298, 441
FspBI CTAG 1 cut(s) 111
GluI GCNGC 4 cut(s) 39, 42, 298, 441
GsaI CCCAGC 1 cut(s) 200
Hin1II CATG 1 cut(s) 229
Hpy166II GTNNAC 1 cut(s) 171
Hpy188I TCNGA 2 cut(s) 153, 319
Hpy188III TCNNGA 3 cut(s) 226, 465, 480
Hpy8I GTNNAC 1 cut(s) 171
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 2 cut(s) 287, 427
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 4 cut(s) 48, 265, 300, 372
HpySE526I ACGT 1 cut(s) 141
Hsp92II CATG 1 cut(s) 229
Kzo9I GATC 1 cut(s) 113
LpnPI CCDG 6 cut(s) 46, 92, 182, 320, 443, 489
Lsp1109I GCAGC 4 cut(s) 25, 28, 284, 452
LweI GCATC 2 cut(s) 150, 332
MaeI CTAG 1 cut(s) 111
MaeII ACGT 1 cut(s) 141
MaeIII GTNAC 2 cut(s) 118, 202
MalI GATC 1 cut(s) 115
MboI GATC 1 cut(s) 113
MboII GAAGA 2 cut(s) 357, 499
MflI RGATCY 1 cut(s) 113
MluCI AATT 4 cut(s) 52, 254, 259, 417
MmeI TCCRAC 1 cut(s) 403
MnlI CCTC 3 cut(s) 58, 159, 430
MseI TTAA 4 cut(s) 252, 258, 344, 389
NdeII GATC 1 cut(s) 113
NlaIII CATG 1 cut(s) 229
PagI TCATGA 1 cut(s) 225
PkrI GCNGC 4 cut(s) 40, 43, 299, 442
PspFI CCCAGC 1 cut(s) 196
PsuI RGATCY 1 cut(s) 113
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
SaqAI TTAA 4 cut(s) 252, 258, 344, 389
SatI GCNGC 4 cut(s) 39, 42, 298, 441
Sau3AI GATC 1 cut(s) 113
SetI ASST 4 cut(s) 144, 170, 198, 252
SfaNI GCATC 2 cut(s) 150, 332
SfcI CTRYAG 1 cut(s) 216
SmlI CTYRAG 2 cut(s) 62, 80
SmoI CTYRAG 2 cut(s) 62, 80
Sse9I AATT 4 cut(s) 52, 254, 259, 417
SsiI CCGC 1 cut(s) 163
SspI AATATT 1 cut(s) 510
SspMI CTAG 1 cut(s) 111
TaaI ACNGT 1 cut(s) 26
TaiI ACGT 1 cut(s) 144
TaqI TCGA 1 cut(s) 385
TasI AATT 4 cut(s) 52, 254, 259, 417
TatI WGTACW 1 cut(s) 21
Tru1I TTAA 4 cut(s) 252, 258, 344, 389
Tru9I TTAA 4 cut(s) 252, 258, 344, 389
TseI GCWGC 4 cut(s) 38, 41, 297, 440
XapI RAATTY 2 cut(s) 52, 254
XmiI GTMKAC 1 cut(s) 170
XspI CTAG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.