Rroxscaffold_2G00094830

Protein of unknown function (DUF 659)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
16197045 .. 16200592
3548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00094830.1

Sequence Viewer

Length: 1779 bp
ATGGTTGCTAATGCTGGCACTATTGGCAATAATGGTGAAGTTGAAAAGGTGAACAGTCAGCAGATTCATATGGCAATAGGACGGTTTCTATATGAAATTCAGGCTCCTCTGGGTGCCGTGAAGAACTCTGTTTATTTTCAGCCAATGATTGATGCAATTGCTTCTGGGGGAATGGAGAGTAAACCACCCTCGTATCATGATCTTCGGGGTTGGATATTAAATAATGTGGTTGAAGAAGTAAAGAATGATATTCATCAGCACATGAATACTTGGGAAAGGAATGGTTGCTCTCTTCTAGTAAACCAATTGAACTCCGAAAAGGGTAGAATATTGCTAAATTTCTCAGTGTACAGTCCCGAAGGAACAACATATTTGAAATCTGTGGATGCTTCCTCATTTATAAATTCTCCAGATGCTTTGTATGAGATTCTTAAGCAAGTGTTGGAAGAAGTTGGAGTTGGGCGTGTTTTGCAAGTAATTACAAATAGTGAAGAGCACTATGTTGTTGCTGGGAAGAGGTTGATGGATACGTTTCCTACGCTGTACTGGTCTCCCTGTGCTGCTGCTTGCATAAATTTGATACTTGAGGATTTTGGAAAAGTTGAGTGGATAAAATCTATTATAGAACAGGCTAGATCTGTTACAAGATTTATCTATAAACACGTCGTCATTCTGAATATGATGCGGAGGTATACTTTTGGAAATGACATTGTGAAGGTGGGAGTAACTCGGTTTGCTACAGACTTTATGACTTTGAAACAAATGGCTGACCTTAAATTCAATTTGCAGACTATGGTTACTTCAAAAGAATGGGAAGGGTGCCCTTATTCTCAAACATCAGAAGGATCAGCAATGCTGGATGTATTAAGTAATCACACATTTTGGTCTTCGTGCATTATGATCACCCGATTAACAAATCCGCTCCTGCGAGTTTTGAGAATTGTTGGTAGCCAGAAGAAGGCAGCAATGGGATATGTATTTGGAGGAATGTATCGAGCAAAAGAAACAATCAAGAGAGAACTTGTCAAGAAAGAAGAATATATGGCTTACTGGAATATTATAGATTACAGGTGGCAAAAATTATGGGATCATCCTCTTCATGCTGCTGGTTTTTACCTTAATCCCAAGTTTTTCTATAGCATCAAGGGAGAAATGCACAAGGTGATTATGTCAAAAATGCTTGACTGCATAGAGAAATTGGTTCCAGATTTAAAAGTTCAAGACGAAATTAGCAAAGAGATAAACTTGTACAAAAATGCTGTTGGAGATCTGGGGAGGAATTTGGCCATTAGAGCTAGAGACACTCTGCTTCCCGCTGAATGGTGGTCTACATATGGCGGTGGTTGCCCAAATATGGCACGTTTTGCAGTTCATATTCTCAGTCAAAATTGCAGCTTAATTCAGTGCAAGGAGAATCAGATTCCTTTTGACCAACTGCATAAGACAAGGAACAGCTTAGAGCGTCAACGGCTTAGTGATTTTGTCTTTGTTCAGTACAACTTGCAACTAAGACAGATGGTTCATAAGAACAAAGAGCATGAGTATGTGGATCCTATATCATTTGACAACACTAGCACTGTTGAAGACTGGATAACAGAGACTGAAATGTACCTAGAAGACAATGAAAATACTGATTGGAAGGCACTGGAACCGCCCTCTTATAATTCGAGGCTTTTAGAACTTTCAGTTGATGAAGCTGAAGACTTGGGTTCAGGGTTTGATGATAACGAGATTTTCTTAAACGGATTGCAATTGGTTAAAGAAGAAGGCAGAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

592

Amino Acids

67.98

Weight (kDa)

5.78

Isoelectric Point (pI)

40.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF659 PF04937 63 - 214 9.6e-56 Domain of unknown function (DUF659)
Dimer_Tnp_hAT PF05699 424 - 501 8.9e-07 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22220 AT3G22220 AT3G22220 AT3G22220 AT4G15020 AT4G15020
fragaria_vesca FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_7g22891 FvH4_7g22891 FvH4_7g22891
malus_domestica MD01G1137200.v1.1 MD02G1265900.v1.1 MD07G1202100.v1.1 MD09G1137900.v1.1 MD09G1138100.v1.1 MD17G1128400.v1.1
prunus_persica Prupe.2G058600_v2.0.a1 Prupe.2G058600_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1
pyrus_communis pycom01g15800 pycom01g15810 pycom01g15840 pycom02g22730 pycom07g18920 pycom07g18930 pycom09g05900 pycom17g12060
rosa_chinensis RchiOBHm_Chr1g0368051 RchiOBHm_Chr2g0153631 RchiOBHm_Chr2g0153641 RchiOBHm_Chr7g0237231
rosa_laevigata RLG00000001022 RLG00000020718
rosa_multiflora Rmu_sc0002117.1_g000006 Rmu_sc0004952.1_g000008 Rmu_sc0005823.1_g000001 Rmu_sc0013273.1_g000001 Rmu_sc0028071.1_g000001
rosa_roxburghii Rroxscaffold_1G00016080 Rroxscaffold_2G00094830 Rroxscaffold_4G00288900
rosa_rugosa Rorug01G0338600 Rorug01G0338700 Rorug02G0441100 Rorug02G0441200 Rorug04G0167900 Rorug07G0273200 Rorug07G0273300 Rorug07G0297100 Rorug07G0297200 Rorug07G0297300
rosa_samantha Rh1AG102500 Rh1AG102600 Rh1AG102700 Rh1AG345600 Rh1BG307900 Rh1CG323500 Rh1DG340000 Rh2AG504100 Rh2BG514800 Rh2CG490100 Rh2DG526900 Rh7AG451500 Rh7AG451700 Rh7AG459100 Rh7AG459200 Rh7BG400700 Rh7BG400800 Rh7BG421300 Rh7BG421400 Rh7BG423400 Rh7BG423500 Rh7BG423800 Rh7BG423900 Rh7CG471000 Rh7CG471100 Rh7CG471200
rosa_wichuraiana Rw1G030760 Rw2G041430 Rw5G036050 Rw7G038020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 401, 1662
AccB1I GGYRCC 2 cut(s) 113, 819
AccBSI CCGCTC 1 cut(s) 922
AccI GTMKAC 2 cut(s) 692, 1328
AciI CCGC 5 cut(s) 685, 920, 1314, 1338, 1652
AclWI GGATC 4 cut(s) 853, 1095, 1544, 1557
AcoI YGGCCR 1 cut(s) 1284
AcsI RAATTY 6 cut(s) 96, 337, 403, 574, 776, 1279
AcuI CTGAAG 1 cut(s) 1719
AdeI CACNNNGTG 1 cut(s) 1162
AfaI GTAC 5 cut(s) 350, 545, 1250, 1496, 1610
AfiI CCNNNNNNNGG 3 cut(s) 958, 1320, 1354
AflII CTTAAG 1 cut(s) 431
AflIII ACRYGT 1 cut(s) 661
AgsI TTSAA 9 cut(s) 44, 233, 310, 376, 757, 781, 804, 1220, 1583
AjiI CACGTC 1 cut(s) 664
AjuI GAANNNNNNNTTGG 2 cut(s) 441, 473
AluBI AGCT 4 cut(s) 1295, 1395, 1455, 1697
AluI AGCT 4 cut(s) 1295, 1395, 1455, 1697
Alw21I GWGCWC 1 cut(s) 498
Alw26I GTCTC 3 cut(s) 555, 1293, 1592
AlwI GGATC 4 cut(s) 853, 1095, 1544, 1557
AlwNI CAGNNNCTG 1 cut(s) 1601
AoxI GGCC 1 cut(s) 1284
ApeKI GCWGC 5 cut(s) 560, 563, 962, 1103, 1392
ApoI RAATTY 6 cut(s) 96, 337, 403, 574, 776, 1279
AsuHPI GGTGA 4 cut(s) 47, 61, 895, 1174
BaeGI GKGCMC 1 cut(s) 824
BaeI ACNNNNGTAYC 2 cut(s) 176, 209
BalI TGGCCA 1 cut(s) 1286
BamHI GGATCC 1 cut(s) 1549
BanI GGYRCC 2 cut(s) 113, 819
BbsI GAAGAC 4 cut(s) 879, 1590, 1623, 1707
Bbv12I GWGCWC 1 cut(s) 498
BbvI GCAGC 5 cut(s) 547, 550, 974, 1090, 1404
BccI CCATC 2 cut(s) 517, 1510
BceAI ACGGC 2 cut(s) 101, 1484
BciVI GTATCC 1 cut(s) 520
BclI TGATCA 1 cut(s) 900
BcoDI GTCTC 3 cut(s) 555, 1293, 1592
BfaI CTAG 5 cut(s) 296, 633, 1296, 1572, 1613
BfmI CTRYAG 2 cut(s) 738, 1135
BfrI CTTAAG 1 cut(s) 431
BfuI GTATCC 1 cut(s) 520
BglII AGATCT 2 cut(s) 635, 1267
BisI GCNGC 5 cut(s) 561, 564, 963, 1104, 1393
BlsI GCNGC 5 cut(s) 562, 565, 964, 1105, 1394
BmgBI CACGTC 1 cut(s) 664
BmiI GGNNCC 6 cut(s) 105, 115, 821, 1203, 1551, 1650
BmsI GCATC 5 cut(s) 142, 376, 403, 672, 1149
BpiI GAAGAC 4 cut(s) 879, 1590, 1623, 1707
BpmI CTGGAG 1 cut(s) 393
BpuEI CTTGAG 1 cut(s) 605
BsaBI GATNNNNATC 1 cut(s) 252
BsaI GGTCTC 1 cut(s) 555
Bsc4I CCNNNNNNNGG 3 cut(s) 958, 1320, 1354
Bse1I ACTGG 4 cut(s) 551, 1055, 1592, 1650
Bse3DI GCAATG 2 cut(s) 858, 972
Bse8I GATNNNNATC 1 cut(s) 252
BseGI GGATG 3 cut(s) 391, 865, 1090
BseJI GATNNNNATC 1 cut(s) 252
BseLI CCNNNNNNNGG 3 cut(s) 958, 1320, 1354
BseMI GCAATG 2 cut(s) 858, 972
BseMII CTCAG 2 cut(s) 357, 1393
BseNI ACTGG 4 cut(s) 551, 1055, 1592, 1650
BseRI GAGGAG 1 cut(s) 96
BseSI GKGCMC 1 cut(s) 824
BseXI GCAGC 5 cut(s) 547, 550, 974, 1090, 1404
BseYI CCCAGC 1 cut(s) 509
BshFI GGCC 1 cut(s) 1286
BshNI GGYRCC 2 cut(s) 113, 819
BsiHKAI GWGCWC 1 cut(s) 498
BslFI GGGAC 1 cut(s) 339
BslI CCNNNNNNNGG 3 cut(s) 958, 1320, 1354
BsmAI GTCTC 3 cut(s) 555, 1293, 1592
BsmFI GGGAC 1 cut(s) 339
BsnI GGCC 1 cut(s) 1286
Bso31I GGTCTC 1 cut(s) 555
Bsp1286I GDGCHC 2 cut(s) 498, 824
Bsp1407I TGTACA 2 cut(s) 348, 1248
Bsp143I GATC 7 cut(s) 199, 635, 845, 900, 1087, 1267, 1549
BspACI CCGC 5 cut(s) 685, 920, 1314, 1338, 1652
BspANI GGCC 1 cut(s) 1286
BspCNI CTCAG 2 cut(s) 356, 1392
BspHI TCATGA 1 cut(s) 196
BspLI GGNNCC 6 cut(s) 105, 115, 821, 1203, 1551, 1650
BspPI GGATC 4 cut(s) 853, 1095, 1544, 1557
BspQI GCTCTTC 1 cut(s) 486
BspT107I GGYRCC 2 cut(s) 113, 819
BspTI CTTAAG 1 cut(s) 431
BspTNI GGTCTC 1 cut(s) 555
BsrBI CCGCTC 1 cut(s) 922
BsrDI GCAATG 2 cut(s) 858, 972
BsrGI TGTACA 2 cut(s) 348, 1248
BsrI ACTGG 4 cut(s) 551, 1055, 1592, 1650
BssMI GATC 7 cut(s) 199, 635, 845, 900, 1087, 1267, 1549
BssNAI GTATAC 1 cut(s) 693
Bst1107I GTATAC 1 cut(s) 693
Bst4CI ACNGT 4 cut(s) 56, 84, 353, 1579
Bst6I CTCTTC 4 cut(s) 297, 486, 509, 1101
BstAFI CTTAAG 1 cut(s) 431
BstAPI GCANNNNNTGC 1 cut(s) 1364
BstAUI TGTACA 2 cut(s) 348, 1248
BstC8I GCNNGC 2 cut(s) 16, 568
BstDEI CTNAG 5 cut(s) 343, 1379, 1456, 1472, 1508
BstF5I GGATG 3 cut(s) 391, 865, 1090
BstKTI GATC 7 cut(s) 202, 638, 848, 903, 1090, 1270, 1552
BstMAI GTCTC 3 cut(s) 555, 1293, 1592
BstMBI GATC 7 cut(s) 199, 635, 845, 900, 1087, 1267, 1549
BstMWI GCNNNNNNNGC 6 cut(s) 24, 469, 1292, 1344, 1364, 1468
BstSFI CTRYAG 2 cut(s) 738, 1135
BstSLI GKGCMC 1 cut(s) 824
BstV1I GCAGC 5 cut(s) 547, 550, 974, 1090, 1404
BstV2I GAAGAC 4 cut(s) 879, 1590, 1623, 1707
BstX2I RGATCY 3 cut(s) 635, 1267, 1549
BstYI RGATCY 3 cut(s) 635, 1267, 1549
BstZ17I GTATAC 1 cut(s) 693
BsuI GTATCC 1 cut(s) 520
BsuRI GGCC 1 cut(s) 1286
BtrI CACGTC 1 cut(s) 664
BtsCI GGATG 3 cut(s) 391, 865, 1090
BtsIMutI CAGTG 4 cut(s) 351, 1409, 1575, 1643
Cac8I GCNNGC 2 cut(s) 16, 568
CaiI CAGNNNCTG 1 cut(s) 1601
CciI TCATGA 1 cut(s) 196
CseI GACGC 1 cut(s) 1451
Csp6I GTAC 5 cut(s) 349, 544, 1249, 1495, 1609
CviAII CATG 4 cut(s) 197, 262, 1100, 1538
CviQI GTAC 5 cut(s) 349, 544, 1249, 1495, 1609
DdeI CTNAG 5 cut(s) 343, 1379, 1456, 1472, 1508
DpnI GATC 7 cut(s) 201, 637, 847, 902, 1089, 1269, 1551
DpnII GATC 7 cut(s) 199, 635, 845, 900, 1087, 1267, 1549
DraI TTTAAA 1 cut(s) 1212
DraIII CACNNNGTG 1 cut(s) 1162
EaeI YGGCCR 1 cut(s) 1284
Eam1104I CTCTTC 4 cut(s) 297, 486, 509, 1101
EarI CTCTTC 4 cut(s) 297, 486, 509, 1101
Eco31I GGTCTC 1 cut(s) 555
Eco57I CTGAAG 1 cut(s) 1719
FaeI CATG 4 cut(s) 200, 265, 1103, 1541
FaqI GGGAC 1 cut(s) 339
FatI CATG 4 cut(s) 196, 261, 1099, 1537
FauI CCCGC 1 cut(s) 1321
FauNDI CATATG 2 cut(s) 69, 1333
FbaI TGATCA 1 cut(s) 900
FblI GTMKAC 2 cut(s) 692, 1328
Fnu4HI GCNGC 5 cut(s) 561, 564, 963, 1104, 1393
FokI GGATG 3 cut(s) 398, 872, 1077
Fsp4HI GCNGC 5 cut(s) 561, 564, 963, 1104, 1393
FspBI CTAG 5 cut(s) 296, 633, 1296, 1572, 1613
GluI GCNGC 5 cut(s) 561, 564, 963, 1104, 1393
GsaI CCCAGC 1 cut(s) 513
GsuI CTGGAG 1 cut(s) 393
HaeIII GGCC 1 cut(s) 1286
HgaI GACGC 1 cut(s) 1451
Hin1II CATG 4 cut(s) 200, 265, 1103, 1541
HincII GTYRAC 1 cut(s) 1466
HindII GTYRAC 1 cut(s) 1466
HinfI GANTC 4 cut(s) 64, 427, 1414, 1420
HphI GGTGA 4 cut(s) 47, 61, 895, 1174
Hpy166II GTNNAC 7 cut(s) 52, 182, 301, 349, 693, 1329, 1466
Hpy188I TCNGA 4 cut(s) 316, 675, 841, 1419
Hpy188III TCNNGA 7 cut(s) 197, 356, 410, 1012, 1027, 1205, 1220
Hpy8I GTNNAC 7 cut(s) 52, 182, 301, 349, 693, 1329, 1466
Hpy99I CGWCG 1 cut(s) 668
HpyAV CCTTC 7 cut(s) 353, 709, 809, 836, 952, 1633, 1760
HpyCH4III ACNGT 4 cut(s) 56, 84, 353, 1579
HpyCH4IV ACGT 3 cut(s) 530, 663, 1360
HpyF10VI GCNNNNNNNGC 6 cut(s) 24, 469, 1292, 1344, 1364, 1468
HpyF3I CTNAG 5 cut(s) 343, 1379, 1456, 1472, 1508
HpySE526I ACGT 3 cut(s) 530, 663, 1360
Hsp92II CATG 4 cut(s) 200, 265, 1103, 1541
Ksp22I TGATCA 1 cut(s) 900
Kzo9I GATC 7 cut(s) 199, 635, 845, 900, 1087, 1267, 1549
LguI GCTCTTC 1 cut(s) 486
LmnI GCTCC 2 cut(s) 109, 927
Lsp1109I GCAGC 5 cut(s) 547, 550, 974, 1090, 1404
LweI GCATC 5 cut(s) 142, 376, 403, 672, 1149
MaeI CTAG 5 cut(s) 296, 633, 1296, 1572, 1613
MaeII ACGT 3 cut(s) 530, 663, 1360
MaeIII GTNAC 3 cut(s) 640, 724, 796
MalI GATC 7 cut(s) 201, 637, 847, 902, 1089, 1269, 1551
MbiI CCGCTC 1 cut(s) 922
MboI GATC 7 cut(s) 199, 635, 845, 900, 1087, 1267, 1549
MfeI CAATTG 3 cut(s) 156, 305, 1751
MflI RGATCY 3 cut(s) 635, 1267, 1549
MhlI GDGCHC 2 cut(s) 498, 824
MlsI TGGCCA 1 cut(s) 1286
MluNI TGGCCA 1 cut(s) 1286
MmeI TCCRAC 4 cut(s) 191, 423, 433, 1243
Mox20I TGGCCA 1 cut(s) 1286
MscI TGGCCA 1 cut(s) 1286
MslI CAYNNNNRTG 1 cut(s) 1542
Msp20I TGGCCA 1 cut(s) 1286
MspA1I CMGCKG 1 cut(s) 1316
MspCI CTTAAG 1 cut(s) 431
MunI CAATTG 3 cut(s) 156, 305, 1751
MwoI GCNNNNNNNGC 6 cut(s) 24, 469, 1292, 1344, 1364, 1468
NdeI CATATG 2 cut(s) 69, 1333
NdeII GATC 7 cut(s) 199, 635, 845, 900, 1087, 1267, 1549
NlaIII CATG 4 cut(s) 200, 265, 1103, 1541
NlaIV GGNNCC 6 cut(s) 105, 115, 821, 1203, 1551, 1650
PagI TCATGA 1 cut(s) 196
PciSI GCTCTTC 1 cut(s) 486
PfeI GAWTC 4 cut(s) 64, 427, 1414, 1420
PkrI GCNGC 5 cut(s) 562, 565, 964, 1105, 1394
PsiI TTATAA 2 cut(s) 401, 1662
PspFI CCCAGC 1 cut(s) 509
PspN4I GGNNCC 6 cut(s) 105, 115, 821, 1203, 1551, 1650
PstNI CAGNNNCTG 1 cut(s) 1601
PsuI RGATCY 3 cut(s) 635, 1267, 1549
RsaI GTAC 5 cut(s) 350, 545, 1250, 1496, 1610
RsaNI GTAC 5 cut(s) 349, 544, 1249, 1495, 1609
RseI CAYNNNNRTG 1 cut(s) 1542
SapI GCTCTTC 1 cut(s) 486
SatI GCNGC 5 cut(s) 561, 564, 963, 1104, 1393
Sau3AI GATC 7 cut(s) 199, 635, 845, 900, 1087, 1267, 1549
SduI GDGCHC 2 cut(s) 498, 824
SfaNI GCATC 5 cut(s) 142, 376, 403, 672, 1149
SfcI CTRYAG 2 cut(s) 738, 1135
SmiMI CAYNNNNRTG 1 cut(s) 1542
SmlI CTYRAG 2 cut(s) 431, 584
SmoI CTYRAG 2 cut(s) 431, 584
SsiI CCGC 5 cut(s) 685, 920, 1314, 1338, 1652
SspI AATATT 2 cut(s) 330, 1057
SspMI CTAG 5 cut(s) 296, 633, 1296, 1572, 1613
TaaI ACNGT 4 cut(s) 56, 84, 353, 1579
TaiI ACGT 3 cut(s) 533, 666, 1363
TaqI TCGA 2 cut(s) 994, 1667
TatI WGTACW 4 cut(s) 348, 543, 1248, 1494
TfiI GAWTC 4 cut(s) 64, 427, 1414, 1420
TscAI CASTG 4 cut(s) 351, 1409, 1582, 1650
TseI GCWGC 5 cut(s) 560, 563, 962, 1103, 1392
TspDTI ATGAA 9 cut(s) 56, 108, 242, 278, 1088, 1361, 1511, 1638, 1707
TspGWI ACGGA 1 cut(s) 1758
TspRI CASTG 4 cut(s) 351, 1409, 1582, 1650
Vha464I CTTAAG 1 cut(s) 431
XapI RAATTY 6 cut(s) 96, 337, 403, 574, 776, 1279
XmiI GTMKAC 2 cut(s) 692, 1328
XspI CTAG 5 cut(s) 296, 633, 1296, 1572, 1613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.