Rorug02G0441100

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000444
Physical Location & Seq
Forward (+)
56582946 .. 56583586
641 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0441100.1

Sequence Viewer

Length: 387 bp
ATGGCAACCTATGCGTACGCAAATCACCAAAACTCATCTCAAAGGTCAGTAGCCATGGTGCTGGCTCTAGTATCTGCAATTGTACTCTCACCACTATATAATGTGACGAGTCGAAAAGCCGATACACGATATTATGAAACAAAGCGGATGAGCTCTGGGTTTGTTCTTCCTATGGTTCTTGCTGGACTAATTATTGCTATTAAAACCACCTCGTCATCTTCCAGTTCATCTTCATCGACACAAGGAAGCTCTTCTTTCATTCCCTCTGCGGATCCTTCGTGGGTACTAAGAATTGGGAGTTCAAGCTGGGGACTTGCTGGGGTTTTAGTCATGTTGATGCTAGTACTTTCATGGCAAAGTTCTGTCCATGAATTTTTCTGGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

128

Amino Acids

13.89

Weight (kDa)

9.99

Isoelectric Point (pI)

54.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22220 AT3G22220 AT3G22220 AT3G22220 AT4G15020 AT4G15020
fragaria_vesca FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_7g22891 FvH4_7g22891 FvH4_7g22891
malus_domestica MD01G1137200.v1.1 MD02G1265900.v1.1 MD07G1202100.v1.1 MD09G1137900.v1.1 MD09G1138100.v1.1 MD17G1128400.v1.1
prunus_persica Prupe.2G058600_v2.0.a1 Prupe.2G058600_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1
pyrus_communis pycom01g15800 pycom01g15810 pycom01g15840 pycom02g22730 pycom07g18920 pycom07g18930 pycom09g05900 pycom17g12060
rosa_chinensis RchiOBHm_Chr1g0368051 RchiOBHm_Chr2g0153631 RchiOBHm_Chr2g0153641 RchiOBHm_Chr7g0237231
rosa_laevigata RLG00000001022 RLG00000020718
rosa_multiflora Rmu_sc0002117.1_g000006 Rmu_sc0004952.1_g000008 Rmu_sc0005823.1_g000001 Rmu_sc0013273.1_g000001 Rmu_sc0028071.1_g000001
rosa_roxburghii Rroxscaffold_1G00016080 Rroxscaffold_2G00094830 Rroxscaffold_4G00288900
rosa_rugosa Rorug01G0338600 Rorug01G0338700 Rorug02G0441100 Rorug02G0441200 Rorug04G0167900 Rorug07G0273200 Rorug07G0273300 Rorug07G0297100 Rorug07G0297200 Rorug07G0297300
rosa_samantha Rh1AG102500 Rh1AG102600 Rh1AG102700 Rh1AG345600 Rh1BG307900 Rh1CG323500 Rh1DG340000 Rh2AG504100 Rh2BG514800 Rh2CG490100 Rh2DG526900 Rh7AG451500 Rh7AG451700 Rh7AG459100 Rh7AG459200 Rh7BG400700 Rh7BG400800 Rh7BG421300 Rh7BG421400 Rh7BG423400 Rh7BG423500 Rh7BG423800 Rh7BG423900 Rh7CG471000 Rh7CG471100 Rh7CG471200
rosa_wichuraiana Rw1G030760 Rw2G041430 Rw5G036050 Rw7G038020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 145, 269
AclWI GGATC 2 cut(s) 266, 279
AcsI RAATTY 1 cut(s) 371
AfaI GTAC 4 cut(s) 17, 84, 285, 345
AgsI TTSAA 1 cut(s) 303
AluBI AGCT 3 cut(s) 153, 249, 306
AluI AGCT 3 cut(s) 153, 249, 306
Alw21I GWGCWC 1 cut(s) 155
AlwI GGATC 2 cut(s) 266, 279
ApoI RAATTY 1 cut(s) 371
Asp700I GAANNNNTTC 1 cut(s) 250
AsuHPI GGTGA 2 cut(s) 17, 81
BamHI GGATCC 1 cut(s) 271
BanII GRGCYC 1 cut(s) 155
Bbv12I GWGCWC 1 cut(s) 155
BfaI CTAG 2 cut(s) 68, 341
BmcAI AGTACT 1 cut(s) 345
BmiI GGNNCC 1 cut(s) 273
BmsI GCATC 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 54
Bse1I ACTGG 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 54
BseGI GGATG 1 cut(s) 153
BseNI ACTGG 1 cut(s) 222
BseYI CCCAGC 2 cut(s) 306, 317
BsiHKAI GWGCWC 1 cut(s) 155
BsiWI CGTACG 1 cut(s) 15
BslFI GGGAC 1 cut(s) 324
BsmFI GGGAC 1 cut(s) 324
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 1 cut(s) 271
Bsp19I CCATGG 1 cut(s) 54
BspACI CCGC 2 cut(s) 145, 269
BspLI GGNNCC 1 cut(s) 273
BspPI GGATC 2 cut(s) 266, 279
BspQI GCTCTTC 1 cut(s) 256
BsrI ACTGG 1 cut(s) 222
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 1 cut(s) 271
BssT1I CCWWGG 1 cut(s) 54
Bst6I CTCTTC 1 cut(s) 256
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 63
BstDEI CTNAG 1 cut(s) 287
BstDSI CCRYGG 1 cut(s) 54
BstF5I GGATG 1 cut(s) 153
BstKTI GATC 1 cut(s) 274
BstMBI GATC 1 cut(s) 271
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 271
BstXI CCANNNNNNTGG 1 cut(s) 61
BstYI RGATCY 1 cut(s) 271
BtgI CCRYGG 1 cut(s) 54
BtsCI GGATG 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 63
Csp6I GTAC 4 cut(s) 16, 83, 284, 344
CviAII CATG 4 cut(s) 55, 331, 351, 368
CviJI RGCY 6 cut(s) 53, 65, 119, 153, 249, 306
CviKI_1 RGCY 6 cut(s) 53, 65, 119, 153, 249, 306
CviQI GTAC 4 cut(s) 16, 83, 284, 344
DdeI CTNAG 1 cut(s) 287
DpnI GATC 1 cut(s) 273
DpnII GATC 1 cut(s) 271
Eam1104I CTCTTC 1 cut(s) 256
EarI CTCTTC 1 cut(s) 256
Ecl136II GAGCTC 1 cut(s) 153
Eco130I CCWWGG 1 cut(s) 54
Eco24I GRGCYC 1 cut(s) 155
Eco53kI GAGCTC 1 cut(s) 153
EcoICRI GAGCTC 1 cut(s) 153
EcoT14I CCWWGG 1 cut(s) 54
EcoT38I GRGCYC 1 cut(s) 155
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 4 cut(s) 58, 334, 354, 371
FaiI YATR 9 cut(s) 12, 56, 97, 99, 135, 173, 332, 352, 369
FalI AAGNNNNNCTT 2 cut(s) 238, 270
FaqI GGGAC 1 cut(s) 324
FatI CATG 4 cut(s) 54, 330, 350, 367
FokI GGATG 1 cut(s) 160
FriOI GRGCYC 1 cut(s) 155
FspBI CTAG 2 cut(s) 68, 341
GsaI CCCAGC 2 cut(s) 310, 321
Hin1II CATG 4 cut(s) 58, 334, 354, 371
HinfI GANTC 1 cut(s) 109
HphI GGTGA 2 cut(s) 17, 81
Hpy188III TCNNGA 1 cut(s) 379
HpyAV CCTTC 1 cut(s) 285
HpyCH4V TGCA 1 cut(s) 77
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 287
Hsp92II CATG 4 cut(s) 58, 334, 354, 371
Kzo9I GATC 1 cut(s) 271
LguI GCTCTTC 1 cut(s) 256
LpnPI CCDG 7 cut(s) 47, 141, 168, 235, 292, 303, 364
LweI GCATC 1 cut(s) 327
MaeI CTAG 2 cut(s) 68, 341
MaeIII GTNAC 1 cut(s) 103
MalI GATC 1 cut(s) 273
MboI GATC 1 cut(s) 271
MboII GAAGA 4 cut(s) 158, 210, 222, 243
MfeI CAATTG 1 cut(s) 78
MflI RGATCY 1 cut(s) 271
MhlI GDGCHC 1 cut(s) 155
MluCI AATT 4 cut(s) 78, 189, 291, 371
MlyI GAGTC 1 cut(s) 118
MnlI CCTC 2 cut(s) 220, 274
MroXI GAANNNNTTC 1 cut(s) 250
MseI TTAA 1 cut(s) 201
MslI CAYNNNNRTG 1 cut(s) 335
MunI CAATTG 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 11
NcoI CCATGG 1 cut(s) 54
NdeII GATC 1 cut(s) 271
NlaIII CATG 4 cut(s) 58, 334, 354, 371
NlaIV GGNNCC 1 cut(s) 273
NmuCI GTSAC 1 cut(s) 103
PciSI GCTCTTC 1 cut(s) 256
PdmI GAANNNNTTC 1 cut(s) 250
Pfl23II CGTACG 1 cut(s) 15
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
Psp124BI GAGCTC 1 cut(s) 155
PspFI CCCAGC 2 cut(s) 306, 317
PspLI CGTACG 1 cut(s) 15
PspN4I GGNNCC 1 cut(s) 273
PsuI RGATCY 1 cut(s) 271
RsaI GTAC 4 cut(s) 17, 84, 285, 345
RsaNI GTAC 4 cut(s) 16, 83, 284, 344
RseI CAYNNNNRTG 1 cut(s) 335
SacI GAGCTC 1 cut(s) 155
SapI GCTCTTC 1 cut(s) 256
SaqAI TTAA 1 cut(s) 201
Sau3AI GATC 1 cut(s) 271
ScaI AGTACT 1 cut(s) 345
SchI GAGTC 1 cut(s) 118
SduI GDGCHC 1 cut(s) 155
SetI ASST 6 cut(s) 11, 47, 155, 212, 251, 308
SfaNI GCATC 1 cut(s) 327
SmiMI CAYNNNNRTG 1 cut(s) 335
Sse9I AATT 4 cut(s) 78, 189, 291, 371
SsiI CCGC 2 cut(s) 145, 269
SspMI CTAG 2 cut(s) 68, 341
SstI GAGCTC 1 cut(s) 155
StyI CCWWGG 1 cut(s) 54
TaqI TCGA 2 cut(s) 112, 236
TasI AATT 4 cut(s) 78, 189, 291, 371
TatI WGTACW 2 cut(s) 82, 343
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TseFI GTSAC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 6 cut(s) 150, 216, 222, 247, 339, 384
XapI RAATTY 1 cut(s) 371
XmnI GAANNNNTTC 1 cut(s) 250
XspI CTAG 2 cut(s) 68, 341
ZrmI AGTACT 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.