Rmu_sc0013273.1_g000001

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013273.1
OG0000444
Physical Location & Seq
Forward (+)
1 .. 1077
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013273.1_g000001.1.cds

Sequence Viewer

Length: 385 bp
gcaaagtcagattccttttgagaaagcacacagcataaggaactgcctagagcgccaacgtctcagggaccttgtctttgttcagtacaacctacgactcagacaaatggttgataaaaacattggagaagattgtatggatcctatatcatttgaaagcattagcattgttgaagactgggtaacagggaaagacgtgtgctcggaagaccttgagagttcaagttggatggcacttgactcaccctctgctagcacgatgcttttaggaccctccaatgatgatgccgaggatttgggctctgggttttatgatggtgagattttcagtagggggaaagacggggaaaatgaaattgttgaagacaatgtagaaaatcattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

127

Amino Acids

14.36

Weight (kDa)

4.22

Isoelectric Point (pI)

56.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22220 AT3G22220 AT3G22220 AT3G22220 AT4G15020 AT4G15020
fragaria_vesca FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_7g22891 FvH4_7g22891 FvH4_7g22891
malus_domestica MD01G1137200.v1.1 MD02G1265900.v1.1 MD07G1202100.v1.1 MD09G1137900.v1.1 MD09G1138100.v1.1 MD17G1128400.v1.1
prunus_persica Prupe.2G058600_v2.0.a1 Prupe.2G058600_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1
pyrus_communis pycom01g15800 pycom01g15810 pycom01g15840 pycom02g22730 pycom07g18920 pycom07g18930 pycom09g05900 pycom17g12060
rosa_chinensis RchiOBHm_Chr1g0368051 RchiOBHm_Chr2g0153631 RchiOBHm_Chr2g0153641 RchiOBHm_Chr7g0237231
rosa_laevigata RLG00000001022 RLG00000020718
rosa_multiflora Rmu_sc0002117.1_g000006 Rmu_sc0004952.1_g000008 Rmu_sc0005823.1_g000001 Rmu_sc0013273.1_g000001 Rmu_sc0028071.1_g000001
rosa_roxburghii Rroxscaffold_1G00016080 Rroxscaffold_2G00094830 Rroxscaffold_4G00288900
rosa_rugosa Rorug01G0338600 Rorug01G0338700 Rorug02G0441100 Rorug02G0441200 Rorug04G0167900 Rorug07G0273200 Rorug07G0273300 Rorug07G0297100 Rorug07G0297200 Rorug07G0297300
rosa_samantha Rh1AG102500 Rh1AG102600 Rh1AG102700 Rh1AG345600 Rh1BG307900 Rh1CG323500 Rh1DG340000 Rh2AG504100 Rh2BG514800 Rh2CG490100 Rh2DG526900 Rh7AG451500 Rh7AG451700 Rh7AG459100 Rh7AG459200 Rh7BG400700 Rh7BG400800 Rh7BG421300 Rh7BG421400 Rh7BG423400 Rh7BG423500 Rh7BG423800 Rh7BG423900 Rh7CG471000 Rh7CG471100 Rh7CG471200
rosa_wichuraiana Rw1G030760 Rw2G041430 Rw5G036050 Rw7G038020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 135, 148
AfaI GTAC 1 cut(s) 87
AflIII ACRYGT 1 cut(s) 196
AgsI TTSAA 4 cut(s) 156, 174, 223, 363
AjiI CACGTC 1 cut(s) 197
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 1 cut(s) 66
AlwI GGATC 2 cut(s) 135, 148
ArsI GACNNNNNNTTYG 2 cut(s) 60, 92
AspLEI GCGC 1 cut(s) 55
AspS9I GGNCC 2 cut(s) 68, 270
AsuHPI GGTGA 2 cut(s) 235, 330
AsuNHI GCTAGC 1 cut(s) 252
AvaII GGWCC 2 cut(s) 68, 270
BamHI GGATCC 1 cut(s) 140
BanII GRGCYC 1 cut(s) 303
BbsI GAAGAC 3 cut(s) 181, 214, 370
Bbv12I GWGCWC 1 cut(s) 204
BccI CCATC 2 cut(s) 224, 309
BcoDI GTCTC 1 cut(s) 66
BfaI CTAG 2 cut(s) 48, 253
BfoI RGCGCY 1 cut(s) 56
Bme18I GGWCC 2 cut(s) 68, 270
BmgBI CACGTC 1 cut(s) 197
BmgT120I GGNCC 2 cut(s) 68, 270
BmiI GGNNCC 3 cut(s) 69, 142, 272
BmrI ACTGGG 1 cut(s) 188
BmsI GCATC 2 cut(s) 250, 275
BmtI GCTAGC 1 cut(s) 256
BmuI ACTGGG 1 cut(s) 188
BpiI GAAGAC 3 cut(s) 181, 214, 370
BpuEI CTTGAG 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 289
Bse1I ACTGG 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 289
BseGI GGATG 1 cut(s) 235
BseMII CTCAG 2 cut(s) 77, 113
BseNI ACTGG 1 cut(s) 183
BsiHKAI GWGCWC 1 cut(s) 204
BslFI GGGAC 1 cut(s) 81
BsmAI GTCTC 1 cut(s) 66
BsmBI CGTCTC 1 cut(s) 66
BsmFI GGGAC 1 cut(s) 81
Bsp1286I GDGCHC 2 cut(s) 204, 303
Bsp143I GATC 1 cut(s) 140
BspCNI CTCAG 2 cut(s) 76, 112
BspLI GGNNCC 3 cut(s) 69, 142, 272
BspOI GCTAGC 1 cut(s) 256
BspPI GGATC 2 cut(s) 135, 148
BsrI ACTGG 1 cut(s) 183
BssECI CCNNGG 1 cut(s) 289
BssMI GATC 1 cut(s) 140
BstC8I GCNNGC 1 cut(s) 254
BstDEI CTNAG 2 cut(s) 63, 99
BstF5I GGATG 1 cut(s) 235
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 1 cut(s) 143
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 1 cut(s) 140
BstMWI GCNNNNNNNGC 1 cut(s) 52
BstV2I GAAGAC 3 cut(s) 181, 214, 370
BstX2I RGATCY 1 cut(s) 140
BstYI RGATCY 1 cut(s) 140
BtrI CACGTC 1 cut(s) 197
BtsCI GGATG 1 cut(s) 235
Cac8I GCNNGC 1 cut(s) 254
CfoI GCGC 1 cut(s) 55
Cfr13I GGNCC 2 cut(s) 68, 270
Csp6I GTAC 1 cut(s) 86
CviJI RGCY 1 cut(s) 301
CviKI_1 RGCY 1 cut(s) 301
CviQI GTAC 1 cut(s) 86
DdeI CTNAG 2 cut(s) 63, 99
DpnI GATC 1 cut(s) 142
DpnII GATC 1 cut(s) 140
Eco24I GRGCYC 1 cut(s) 303
Eco47I GGWCC 2 cut(s) 68, 270
EcoO109I RGGNCCY 2 cut(s) 68, 270
EcoT38I GRGCYC 1 cut(s) 303
Esp3I CGTCTC 1 cut(s) 66
FaiI YATR 4 cut(s) 36, 138, 147, 313
FaqI GGGAC 1 cut(s) 81
FokI GGATG 1 cut(s) 242
FriOI GRGCYC 1 cut(s) 303
FspBI CTAG 2 cut(s) 48, 253
GlaI GCGC 1 cut(s) 54
HaeII RGCGCY 1 cut(s) 56
HhaI GCGC 1 cut(s) 55
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HinfI GANTC 3 cut(s) 11, 97, 240
HphI GGTGA 2 cut(s) 235, 330
Hpy188I TCNGA 3 cut(s) 10, 102, 206
HpyCH4IV ACGT 2 cut(s) 59, 196
HpyF10VI GCNNNNNNNGC 1 cut(s) 52
HpyF3I CTNAG 2 cut(s) 63, 99
HpySE526I ACGT 2 cut(s) 59, 196
HspAI GCGC 1 cut(s) 53
Kzo9I GATC 1 cut(s) 140
LpnPI CCDG 4 cut(s) 50, 164, 172, 289
LweI GCATC 2 cut(s) 250, 275
MaeI CTAG 2 cut(s) 48, 253
MaeII ACGT 2 cut(s) 59, 196
MaeIII GTNAC 1 cut(s) 182
MalI GATC 1 cut(s) 142
MboI GATC 1 cut(s) 140
MboII GAAGA 4 cut(s) 141, 186, 219, 375
MflI RGATCY 1 cut(s) 140
MhlI GDGCHC 2 cut(s) 204, 303
MluCI AATT 1 cut(s) 355
MlyI GAGTC 2 cut(s) 91, 234
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 3 cut(s) 257, 284, 284
MwoI GCNNNNNNNGC 1 cut(s) 52
NdeII GATC 1 cut(s) 140
NheI GCTAGC 1 cut(s) 252
NlaIV GGNNCC 3 cut(s) 69, 142, 272
NmeAIII GCCGAG 1 cut(s) 314
PfeI GAWTC 1 cut(s) 11
PflFI GACNNNGTC 1 cut(s) 72
PleI GAGTC 2 cut(s) 91, 234
PpsI GAGTC 2 cut(s) 91, 234
PpuMI RGGWCCY 2 cut(s) 68, 270
Psp5II RGGWCCY 2 cut(s) 68, 270
PspN4I GGNNCC 3 cut(s) 69, 142, 272
PspPI GGNCC 2 cut(s) 68, 270
PspPPI RGGWCCY 2 cut(s) 68, 270
PsuI RGATCY 1 cut(s) 140
PsyI GACNNNGTC 1 cut(s) 72
RsaI GTAC 1 cut(s) 87
RsaNI GTAC 1 cut(s) 86
Sau3AI GATC 1 cut(s) 140
Sau96I GGNCC 2 cut(s) 68, 270
SchI GAGTC 2 cut(s) 91, 234
SduI GDGCHC 2 cut(s) 204, 303
SetI ASST 5 cut(s) 62, 73, 94, 199, 214
SfaNI GCATC 2 cut(s) 250, 275
SinI GGWCC 2 cut(s) 68, 270
SmlI CTYRAG 1 cut(s) 213
SmoI CTYRAG 1 cut(s) 213
Sse9I AATT 1 cut(s) 355
SspMI CTAG 2 cut(s) 48, 253
TaiI ACGT 2 cut(s) 62, 199
TasI AATT 1 cut(s) 355
TatI WGTACW 1 cut(s) 85
TfiI GAWTC 1 cut(s) 11
TspDTI ATGAA 1 cut(s) 367
Tth111I GACNNNGTC 1 cut(s) 72
VpaK11BI GGWCC 2 cut(s) 68, 270
XspI CTAG 2 cut(s) 48, 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.