RLG00000001022

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000444
Physical Location & Seq
Forward (+)
9284445 .. 9288299
3855 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001022

Sequence Viewer

Length: 762 bp
ATGGGTGCGAACCCGAGTCGTTGTTTTAGTGAACTAGACAATGTGTTTGCTGAAAATGAAGTTGGAGGGCCCAATTTGATGAATCAAGAGGAAGATGTGGGAGTGAGTGTTGTTAATGGGATTAGGGTTGGTGATAATCTGACTGATGTGCCTCTTGAGATTGATGATTGTTTTAGGAGTGATGGTCTAGAGGGATTGACTACTGTGCCTCTTGCAGTAGTTGACTCGTATAGGGGTAATGCTCTAGGGAGAAAAGTTGGAGTACCGAATTTCAGTTTTTCGGAAAATCGAGAGGAGGGTGTTGATAGACTAGTAGGGTGGAGGGGTGGAACTTCTTTTGTAGCTACTACTGCTGGTTTGGGTTCTGGTTCTGCTAATGCTACTAAACTGAGTTATGTCCCAGCTCCTATTCGTAGTGAGGTCGACAGGCCATTTTACGAAAACACGCAAGGAAGATCAGCTGGTCATCCCAATTCAGATTTGTTTGAAAATGAAGCAGAAGTTGGCACAAGCAATACAAACGGGAAAAACAGGAAGAGGGTAAGAGATGAAAATGGATCAATGGCTGCCAATGCTGGCACTGTTGGCAGTAATGGTGAAGTTGAAAAGGCGAGCAGCCAGCAGATTCATATGGCAATAGGACGGTTTCTATATGAAATTCAGGCTCCTCTGGATGCCTTGATGAAGCTGAAGACTTGGGTTCAGAAACTGACGGAATTGGTAGGGGCGAAAGCTAGTATTATAAGGCTAAGGGTGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

254

Amino Acids

27.13

Weight (kDa)

5.05

Isoelectric Point (pI)

23.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22220 AT3G22220 AT3G22220 AT3G22220 AT4G15020 AT4G15020
fragaria_vesca FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_7g22891 FvH4_7g22891 FvH4_7g22891
malus_domestica MD01G1137200.v1.1 MD02G1265900.v1.1 MD07G1202100.v1.1 MD09G1137900.v1.1 MD09G1138100.v1.1 MD17G1128400.v1.1
prunus_persica Prupe.2G058600_v2.0.a1 Prupe.2G058600_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1
pyrus_communis pycom01g15800 pycom01g15810 pycom01g15840 pycom02g22730 pycom07g18920 pycom07g18930 pycom09g05900 pycom17g12060
rosa_chinensis RchiOBHm_Chr1g0368051 RchiOBHm_Chr2g0153631 RchiOBHm_Chr2g0153641 RchiOBHm_Chr7g0237231
rosa_laevigata RLG00000001022 RLG00000020718
rosa_multiflora Rmu_sc0002117.1_g000006 Rmu_sc0004952.1_g000008 Rmu_sc0005823.1_g000001 Rmu_sc0013273.1_g000001 Rmu_sc0028071.1_g000001
rosa_roxburghii Rroxscaffold_1G00016080 Rroxscaffold_2G00094830 Rroxscaffold_4G00288900
rosa_rugosa Rorug01G0338600 Rorug01G0338700 Rorug02G0441100 Rorug02G0441200 Rorug04G0167900 Rorug07G0273200 Rorug07G0273300 Rorug07G0297100 Rorug07G0297200 Rorug07G0297300
rosa_samantha Rh1AG102500 Rh1AG102600 Rh1AG102700 Rh1AG345600 Rh1BG307900 Rh1CG323500 Rh1DG340000 Rh2AG504100 Rh2BG514800 Rh2CG490100 Rh2DG526900 Rh7AG451500 Rh7AG451700 Rh7AG459100 Rh7AG459200 Rh7BG400700 Rh7BG400800 Rh7BG421300 Rh7BG421400 Rh7BG423400 Rh7BG423500 Rh7BG423800 Rh7BG423900 Rh7CG471000 Rh7CG471100 Rh7CG471200
rosa_wichuraiana Rw1G030760 Rw2G041430 Rw5G036050 Rw7G038020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 743
AccI GTMKAC 1 cut(s) 423
AclWI GGATC 1 cut(s) 565
AcsI RAATTY 2 cut(s) 268, 657
AcuI CTGAAG 1 cut(s) 710
AfaI GTAC 1 cut(s) 264
AgsI TTSAA 2 cut(s) 488, 605
AhlI ACTAGT 1 cut(s) 310
AjuI GAANNNNNNNTTGG 4 cut(s) 45, 77, 486, 518
AluBI AGCT 5 cut(s) 344, 404, 461, 688, 734
AluI AGCT 5 cut(s) 344, 404, 461, 688, 734
AlwI GGATC 1 cut(s) 565
AlwNI CAGNNNCTG 1 cut(s) 709
Ama87I CYCGRG 1 cut(s) 13
AoxI GGCC 2 cut(s) 68, 428
ApaI GGGCCC 1 cut(s) 72
ApeKI GCWGC 2 cut(s) 566, 615
ApoI RAATTY 2 cut(s) 268, 657
ArsI GACNNNNNNTTYG 2 cut(s) 29, 61
AspS9I GGNCC 2 cut(s) 68, 69
AsuHPI GGTGA 2 cut(s) 143, 608
AvaI CYCGRG 1 cut(s) 13
BaeGI GKGCMC 1 cut(s) 72
BanII GRGCYC 1 cut(s) 72
BbsI GAAGAC 1 cut(s) 698
BbvI GCAGC 2 cut(s) 553, 627
BccI CCATC 1 cut(s) 176
BcuI ACTAGT 1 cut(s) 310
BfaI CTAG 5 cut(s) 35, 188, 245, 311, 735
BisI GCNGC 2 cut(s) 567, 616
BlsI GCNGC 2 cut(s) 568, 617
BmeT110I CYCGRG 1 cut(s) 13
BmgT120I GGNCC 2 cut(s) 68, 69
BmiI GGNNCC 2 cut(s) 70, 666
BmsI GCATC 1 cut(s) 664
BpiI GAAGAC 1 cut(s) 698
Bpu10I CCTNAGC 1 cut(s) 749
BpuEI CTTGAG 1 cut(s) 176
BsaXI ACNNNNNCTCC 4 cut(s) 93, 123, 169, 199
BseGI GGATG 2 cut(s) 466, 679
BseMII CTCAG 1 cut(s) 380
BseRI GAGGAG 2 cut(s) 308, 657
BseSI GKGCMC 1 cut(s) 72
BseXI GCAGC 2 cut(s) 553, 627
BseYI CCCAGC 1 cut(s) 400
BshFI GGCC 2 cut(s) 70, 430
BsiHKCI CYCGRG 1 cut(s) 13
BslFI GGGAC 1 cut(s) 383
BsmFI GGGAC 1 cut(s) 383
BsnI GGCC 2 cut(s) 70, 430
BsoBI CYCGRG 1 cut(s) 13
Bsp120I GGGCCC 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 72
Bsp143I GATC 2 cut(s) 455, 557
BspANI GGCC 2 cut(s) 70, 430
BspCNI CTCAG 1 cut(s) 381
BspLI GGNNCC 2 cut(s) 70, 666
BspPI GGATC 1 cut(s) 565
BssMI GATC 2 cut(s) 455, 557
Bst4CI ACNGT 3 cut(s) 205, 583, 645
Bst6I CTCTTC 1 cut(s) 530
BstC8I GCNNGC 3 cut(s) 577, 613, 620
BstDEI CTNAG 2 cut(s) 389, 749
BstF5I GGATG 2 cut(s) 466, 679
BstKTI GATC 2 cut(s) 458, 560
BstMBI GATC 2 cut(s) 455, 557
BstMWI GCNNNNNNNGC 3 cut(s) 350, 572, 585
BstSLI GKGCMC 1 cut(s) 72
BstV1I GCAGC 2 cut(s) 553, 627
BstV2I GAAGAC 1 cut(s) 698
BsuRI GGCC 2 cut(s) 70, 430
BtsCI GGATG 2 cut(s) 466, 679
BtsIMutI CAGTG 1 cut(s) 579
Cac8I GCNNGC 3 cut(s) 577, 613, 620
CaiI CAGNNNCTG 1 cut(s) 709
Cfr13I GGNCC 2 cut(s) 68, 69
Csp6I GTAC 1 cut(s) 263
CviQI GTAC 1 cut(s) 263
DdeI CTNAG 2 cut(s) 389, 749
DpnI GATC 2 cut(s) 457, 559
DpnII GATC 2 cut(s) 455, 557
Eam1104I CTCTTC 1 cut(s) 530
EarI CTCTTC 1 cut(s) 530
Eco24I GRGCYC 1 cut(s) 72
Eco57I CTGAAG 1 cut(s) 710
Eco88I CYCGRG 1 cut(s) 13
EcoO109I RGGNCCY 1 cut(s) 68
EcoT38I GRGCYC 1 cut(s) 72
FaiI YATR 7 cut(s) 231, 396, 630, 632, 652, 654, 743
FaqI GGGAC 1 cut(s) 383
FauNDI CATATG 1 cut(s) 630
FblI GTMKAC 1 cut(s) 423
Fnu4HI GCNGC 2 cut(s) 567, 616
FokI GGATG 2 cut(s) 453, 686
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 2 cut(s) 567, 616
FspBI CTAG 5 cut(s) 35, 188, 245, 311, 735
GluI GCNGC 2 cut(s) 567, 616
GsaI CCCAGC 1 cut(s) 404
HaeIII GGCC 2 cut(s) 70, 430
HincII GTYRAC 2 cut(s) 223, 424
HindII GTYRAC 2 cut(s) 223, 424
HinfI GANTC 4 cut(s) 16, 82, 224, 625
HphI GGTGA 2 cut(s) 143, 608
Hpy166II GTNNAC 3 cut(s) 32, 223, 424
Hpy188I TCNGA 4 cut(s) 141, 283, 478, 705
Hpy188III TCNNGA 5 cut(s) 86, 155, 188, 290, 671
Hpy8I GTNNAC 3 cut(s) 32, 223, 424
HpyCH4III ACNGT 3 cut(s) 205, 583, 645
HpyCH4V TGCA 1 cut(s) 215
HpyF10VI GCNNNNNNNGC 3 cut(s) 350, 572, 585
HpyF3I CTNAG 2 cut(s) 389, 749
Kzo9I GATC 2 cut(s) 455, 557
LmnI GCTCC 2 cut(s) 409, 670
Lsp1109I GCAGC 2 cut(s) 553, 627
LweI GCATC 1 cut(s) 664
MaeI CTAG 5 cut(s) 35, 188, 245, 311, 735
MalI GATC 2 cut(s) 457, 559
MboI GATC 2 cut(s) 455, 557
MboII GAAGA 4 cut(s) 104, 465, 547, 703
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 5 cut(s) 73, 268, 472, 657, 716
MlyI GAGTC 2 cut(s) 25, 218
MmeI TCCRAC 2 cut(s) 43, 238
MseI TTAA 1 cut(s) 114
MspA1I CMGCKG 1 cut(s) 461
MwoI GCNNNNNNNGC 3 cut(s) 350, 572, 585
NdeI CATATG 1 cut(s) 630
NdeII GATC 2 cut(s) 455, 557
NlaIV GGNNCC 2 cut(s) 70, 666
PfeI GAWTC 2 cut(s) 82, 625
PkrI GCNGC 2 cut(s) 568, 617
PleI GAGTC 2 cut(s) 24, 218
PpsI GAGTC 2 cut(s) 24, 218
PsiI TTATAA 1 cut(s) 743
PspFI CCCAGC 1 cut(s) 400
PspN4I GGNNCC 2 cut(s) 70, 666
PspOMI GGGCCC 1 cut(s) 68
PspPI GGNCC 2 cut(s) 68, 69
PstNI CAGNNNCTG 1 cut(s) 709
PvuII CAGCTG 1 cut(s) 461
RsaI GTAC 1 cut(s) 264
RsaNI GTAC 1 cut(s) 263
SalI GTCGAC 1 cut(s) 422
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 2 cut(s) 567, 616
Sau3AI GATC 2 cut(s) 455, 557
Sau96I GGNCC 2 cut(s) 68, 69
SchI GAGTC 2 cut(s) 25, 218
SduI GDGCHC 1 cut(s) 72
SetI ASST 6 cut(s) 346, 406, 423, 463, 690, 736
SfaNI GCATC 1 cut(s) 664
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
SpeI ACTAGT 1 cut(s) 310
Sse9I AATT 5 cut(s) 73, 268, 472, 657, 716
SspMI CTAG 5 cut(s) 35, 188, 245, 311, 735
TaaI ACNGT 3 cut(s) 205, 583, 645
TaqI TCGA 2 cut(s) 289, 423
TasI AATT 5 cut(s) 73, 268, 472, 657, 716
TfiI GAWTC 2 cut(s) 82, 625
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 1 cut(s) 586
TseI GCWGC 2 cut(s) 566, 615
TspDTI ATGAA 7 cut(s) 72, 95, 507, 564, 617, 669, 698
TspGWI ACGGA 1 cut(s) 728
TspRI CASTG 1 cut(s) 586
XapI RAATTY 2 cut(s) 268, 657
XbaI TCTAGA 1 cut(s) 187
XmiI GTMKAC 1 cut(s) 423
XspI CTAG 5 cut(s) 35, 188, 245, 311, 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.