Rmu_sc0005823.1_g000001

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005823.1
OG0000444
Physical Location & Seq
Reverse (-)
2 .. 889
888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005823.1_g000001.1.cds

Sequence Viewer

Length: 888 bp
atgacatctttggagggttttgagcccatagctatttccccacagaaacaagacccaggatggaaacactgtcaactttacattaaaactggggacccaaaagttgagttaaagaagtgtttatattgtggcaaagtgtttcagggtggagggattaataggtttaaatctcaccttgctggtagaaaaggaaatggtcccatttgtgatcaggtccctcctcatgttcgagtttccatgttgcagtgcttagatgaaaaaattgcatctttaaggcacagaaagagtcaaatggctgtgaacccgagtcgtagttttagtgaactagacaatgtgtttgctgaaaatgaagttggagggcccaatttgatgaatcaagaggaagatgtgggaatgagtgttgataatggtgataatctgactgatgtgcctcttgagattgatgattgttttaggagtgatggtctagagggattgactactgtgcctcttgcagcagttgactcgtataagtgtaatgctctagggagaaaagctggagtaccgaatcacagtttttcagaaaatcgagaggtgggtgttgatagaccagtagggtggagaggcggaacttcttttgtagctactactgctggtttcggttctggttctgctaatgctactaaattgagttatgtcccagctcctattcgtagtgaggtagacaagccattttatgaaaacacgcaaggaagatcagttagtcatcccaattcatatttgtttgaaaatgaaacagatgttggcacaagtaatacaaatgggaagtacaggaagagggtaagagatgaaaatggatcaatggttgctaatgctggcactattggcaattatggtgaagttgaaaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

296

Amino Acids

32.19

Weight (kDa)

6.11

Isoelectric Point (pI)

30.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22220 AT3G22220 AT3G22220 AT3G22220 AT4G15020 AT4G15020
fragaria_vesca FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_7g22891 FvH4_7g22891 FvH4_7g22891
malus_domestica MD01G1137200.v1.1 MD02G1265900.v1.1 MD07G1202100.v1.1 MD09G1137900.v1.1 MD09G1138100.v1.1 MD17G1128400.v1.1
prunus_persica Prupe.2G058600_v2.0.a1 Prupe.2G058600_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1
pyrus_communis pycom01g15800 pycom01g15810 pycom01g15840 pycom02g22730 pycom07g18920 pycom07g18930 pycom09g05900 pycom17g12060
rosa_chinensis RchiOBHm_Chr1g0368051 RchiOBHm_Chr2g0153631 RchiOBHm_Chr2g0153641 RchiOBHm_Chr7g0237231
rosa_laevigata RLG00000001022 RLG00000020718
rosa_multiflora Rmu_sc0002117.1_g000006 Rmu_sc0004952.1_g000008 Rmu_sc0005823.1_g000001 Rmu_sc0013273.1_g000001 Rmu_sc0028071.1_g000001
rosa_roxburghii Rroxscaffold_1G00016080 Rroxscaffold_2G00094830 Rroxscaffold_4G00288900
rosa_rugosa Rorug01G0338600 Rorug01G0338700 Rorug02G0441100 Rorug02G0441200 Rorug04G0167900 Rorug07G0273200 Rorug07G0273300 Rorug07G0297100 Rorug07G0297200 Rorug07G0297300
rosa_samantha Rh1AG102500 Rh1AG102600 Rh1AG102700 Rh1AG345600 Rh1BG307900 Rh1CG323500 Rh1DG340000 Rh2AG504100 Rh2BG514800 Rh2CG490100 Rh2DG526900 Rh7AG451500 Rh7AG451700 Rh7AG459100 Rh7AG459200 Rh7BG400700 Rh7BG400800 Rh7BG421300 Rh7BG421400 Rh7BG423400 Rh7BG423500 Rh7BG423800 Rh7BG423900 Rh7CG471000 Rh7CG471100 Rh7CG471200
rosa_wichuraiana Rw1G030760 Rw2G041430 Rw5G036050 Rw7G038020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 702
AciI CCGC 1 cut(s) 606
AclWI GGATC 1 cut(s) 844
AfaI GTAC 2 cut(s) 543, 809
AgsI TTSAA 2 cut(s) 767, 884
AjnI CCWGG 1 cut(s) 55
AjuI GAANNNNNNNTTGG 4 cut(s) 336, 368, 765, 797
AluBI AGCT 4 cut(s) 32, 536, 623, 683
AluI AGCT 4 cut(s) 32, 536, 623, 683
AlwI GGATC 1 cut(s) 844
Ama87I CYCGRG 1 cut(s) 304
AoxI GGCC 1 cut(s) 359
ApaI GGGCCC 1 cut(s) 363
ApeKI GCWGC 1 cut(s) 494
ArsI GACNNNNNNTTYG 2 cut(s) 320, 352
AseI ATTAAT 1 cut(s) 156
AspS9I GGNCC 5 cut(s) 94, 197, 214, 359, 360
AsuHPI GGTGA 3 cut(s) 164, 422, 887
AvaI CYCGRG 1 cut(s) 304
AvaII GGWCC 3 cut(s) 94, 197, 214
BaeGI GKGCMC 1 cut(s) 363
BanII GRGCYC 2 cut(s) 27, 363
BbvI GCAGC 1 cut(s) 506
BccI CCATC 2 cut(s) 54, 455
BcgI CGANNNNNNTGC 2 cut(s) 486, 520
BciT130I CCWGG 1 cut(s) 57
BclI TGATCA 1 cut(s) 208
BfaI CTAG 3 cut(s) 326, 467, 524
BisI GCNGC 1 cut(s) 495
BlsI GCNGC 1 cut(s) 496
Bme1390I CCNGG 1 cut(s) 57
Bme18I GGWCC 3 cut(s) 94, 197, 214
BmeT110I CYCGRG 1 cut(s) 304
BmgT120I GGNCC 5 cut(s) 94, 197, 214, 359, 360
BmiI GGNNCC 5 cut(s) 95, 96, 199, 216, 361
BmrFI CCNGG 1 cut(s) 57
BmrI ACTGGG 1 cut(s) 99
BmsI GCATC 1 cut(s) 275
BmuI ACTGGG 1 cut(s) 99
BpmI CTGGAG 1 cut(s) 558
BpuEI CTTGAG 1 cut(s) 455
BsaJI CCNNGG 1 cut(s) 55
BsaXI ACNNNNNCTCC 2 cut(s) 448, 478
Bse1I ACTGG 2 cut(s) 94, 590
BseBI CCWGG 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 55
BseGI GGATG 2 cut(s) 65, 745
BseNI ACTGG 2 cut(s) 94, 590
BseRI GAGGAG 1 cut(s) 210
BseSI GKGCMC 1 cut(s) 363
BseXI GCAGC 1 cut(s) 506
BseYI CCCAGC 1 cut(s) 679
BshFI GGCC 1 cut(s) 361
BsiHKCI CYCGRG 1 cut(s) 304
BslFI GGGAC 4 cut(s) 107, 183, 200, 662
BsmFI GGGAC 4 cut(s) 107, 183, 200, 662
BsnI GGCC 1 cut(s) 361
BsoBI CYCGRG 1 cut(s) 304
Bsp120I GGGCCC 1 cut(s) 359
Bsp1286I GDGCHC 2 cut(s) 27, 363
Bsp143I GATC 3 cut(s) 208, 734, 836
BspACI CCGC 1 cut(s) 606
BspANI GGCC 1 cut(s) 361
BspLI GGNNCC 5 cut(s) 95, 96, 199, 216, 361
BspPI GGATC 1 cut(s) 844
BsrI ACTGG 2 cut(s) 94, 590
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 3 cut(s) 208, 734, 836
Bst2UI CCWGG 1 cut(s) 57
Bst4CI ACNGT 3 cut(s) 71, 484, 554
Bst6I CTCTTC 1 cut(s) 809
BstC8I GCNNGC 1 cut(s) 856
BstDEI CTNAG 1 cut(s) 250
BstF5I GGATG 2 cut(s) 65, 745
BstKTI GATC 3 cut(s) 211, 737, 839
BstMBI GATC 3 cut(s) 208, 734, 836
BstMWI GCNNNNNNNGC 2 cut(s) 629, 864
BstNI CCWGG 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 55
BstSLI GKGCMC 1 cut(s) 363
BstV1I GCAGC 1 cut(s) 506
BstXI CCANNNNNNTGG 1 cut(s) 597
BsuRI GGCC 1 cut(s) 361
BtsCI GGATG 2 cut(s) 65, 745
BtsI GCAGTG 1 cut(s) 251
BtsIMutI CAGTG 2 cut(s) 67, 251
Cac8I GCNNGC 1 cut(s) 856
Cfr13I GGNCC 5 cut(s) 94, 197, 214, 359, 360
Csp6I GTAC 2 cut(s) 542, 808
CviAII CATG 2 cut(s) 224, 238
CviJI RGCY 8 cut(s) 25, 32, 296, 361, 536, 623, 683, 709
CviKI_1 RGCY 8 cut(s) 25, 32, 296, 361, 536, 623, 683, 709
CviQI GTAC 2 cut(s) 542, 808
DdeI CTNAG 1 cut(s) 250
DpnI GATC 3 cut(s) 210, 736, 838
DpnII GATC 3 cut(s) 208, 734, 836
DraI TTTAAA 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 809
EarI CTCTTC 1 cut(s) 809
EciI GGCGGA 1 cut(s) 621
Eco24I GRGCYC 2 cut(s) 27, 363
Eco47I GGWCC 3 cut(s) 94, 197, 214
Eco88I CYCGRG 1 cut(s) 304
EcoO109I RGGNCCY 3 cut(s) 94, 214, 359
EcoRII CCWGG 1 cut(s) 55
EcoT38I GRGCYC 2 cut(s) 27, 363
FaeI CATG 2 cut(s) 227, 241
FaiI YATR 9 cut(s) 29, 124, 225, 239, 510, 675, 717, 757, 873
FaqI GGGAC 4 cut(s) 107, 183, 200, 662
FatI CATG 2 cut(s) 223, 237
FbaI TGATCA 1 cut(s) 208
FblI GTMKAC 1 cut(s) 702
Fnu4HI GCNGC 1 cut(s) 495
FokI GGATG 2 cut(s) 72, 732
FriOI GRGCYC 2 cut(s) 27, 363
Fsp4HI GCNGC 1 cut(s) 495
FspBI CTAG 3 cut(s) 326, 467, 524
GluI GCNGC 1 cut(s) 495
GsaI CCCAGC 1 cut(s) 683
GsuI CTGGAG 1 cut(s) 558
HaeIII GGCC 1 cut(s) 361
Hin1II CATG 2 cut(s) 227, 241
HincII GTYRAC 2 cut(s) 74, 502
HindII GTYRAC 2 cut(s) 74, 502
HinfI GANTC 5 cut(s) 286, 307, 373, 503, 547
HphI GGTGA 3 cut(s) 164, 422, 887
Hpy166II GTNNAC 5 cut(s) 74, 301, 323, 502, 703
Hpy188I TCNGA 2 cut(s) 420, 562
Hpy188III TCNNGA 4 cut(s) 377, 434, 467, 569
Hpy8I GTNNAC 5 cut(s) 74, 301, 323, 502, 703
HpyCH4III ACNGT 3 cut(s) 71, 484, 554
HpyCH4V TGCA 3 cut(s) 244, 266, 494
HpyF10VI GCNNNNNNNGC 2 cut(s) 629, 864
HpyF3I CTNAG 1 cut(s) 250
Hsp92II CATG 2 cut(s) 227, 241
KflI GGGWCCC 1 cut(s) 94
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 3 cut(s) 208, 734, 836
LmnI GCTCC 1 cut(s) 688
Lsp1109I GCAGC 1 cut(s) 506
LweI GCATC 1 cut(s) 275
MaeI CTAG 3 cut(s) 326, 467, 524
MalI GATC 3 cut(s) 210, 736, 838
MboI GATC 3 cut(s) 208, 734, 836
MboII GAAGA 3 cut(s) 395, 744, 826
MhlI GDGCHC 2 cut(s) 27, 363
MluCI AATT 5 cut(s) 261, 364, 665, 751, 868
MlyI GAGTC 3 cut(s) 295, 316, 497
MmeI TCCRAC 1 cut(s) 334
MseI TTAA 5 cut(s) 84, 110, 156, 165, 272
MspR9I CCNGG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 57
MwoI GCNNNNNNNGC 2 cut(s) 629, 864
NdeII GATC 3 cut(s) 208, 734, 836
NlaIII CATG 2 cut(s) 227, 241
NlaIV GGNNCC 5 cut(s) 95, 96, 199, 216, 361
PfeI GAWTC 2 cut(s) 373, 547
PkrI GCNGC 1 cut(s) 496
PleI GAGTC 3 cut(s) 294, 315, 497
PpsI GAGTC 3 cut(s) 294, 315, 497
PpuMI RGGWCCY 2 cut(s) 94, 214
PshBI ATTAAT 1 cut(s) 156
Psp5II RGGWCCY 2 cut(s) 94, 214
Psp6I CCWGG 1 cut(s) 55
PspFI CCCAGC 1 cut(s) 679
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 5 cut(s) 95, 96, 199, 216, 361
PspOMI GGGCCC 1 cut(s) 359
PspPI GGNCC 5 cut(s) 94, 197, 214, 359, 360
PspPPI RGGWCCY 2 cut(s) 94, 214
RsaI GTAC 2 cut(s) 543, 809
RsaNI GTAC 2 cut(s) 542, 808
SaqAI TTAA 5 cut(s) 84, 110, 156, 165, 272
SatI GCNGC 1 cut(s) 495
Sau3AI GATC 3 cut(s) 208, 734, 836
Sau96I GGNCC 5 cut(s) 94, 197, 214, 359, 360
SchI GAGTC 3 cut(s) 295, 316, 497
ScrFI CCNGG 1 cut(s) 57
SduI GDGCHC 2 cut(s) 27, 363
SetI ASST 9 cut(s) 34, 164, 177, 216, 538, 576, 625, 685, 702
SfaNI GCATC 1 cut(s) 275
SinI GGWCC 3 cut(s) 94, 197, 214
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
Sse9I AATT 5 cut(s) 261, 364, 665, 751, 868
SsiI CCGC 1 cut(s) 606
SspMI CTAG 3 cut(s) 326, 467, 524
StyD4I CCNGG 1 cut(s) 55
TaaI ACNGT 3 cut(s) 71, 484, 554
TaqI TCGA 2 cut(s) 229, 568
TasI AATT 5 cut(s) 261, 364, 665, 751, 868
TatI WGTACW 1 cut(s) 807
TfiI GAWTC 2 cut(s) 373, 547
Tru1I TTAA 5 cut(s) 84, 110, 156, 165, 272
Tru9I TTAA 5 cut(s) 84, 110, 156, 165, 272
TscAI CASTG 2 cut(s) 74, 251
TseI GCWGC 1 cut(s) 494
TspDTI ATGAA 7 cut(s) 270, 363, 386, 732, 744, 786, 843
TspRI CASTG 2 cut(s) 74, 251
VpaK11BI GGWCC 3 cut(s) 94, 197, 214
VspI ATTAAT 1 cut(s) 156
XbaI TCTAGA 1 cut(s) 466
XmiI GTMKAC 1 cut(s) 702
XspI CTAG 3 cut(s) 326, 467, 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.