Rorug07G0273300

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000444
Physical Location & Seq
Forward (+)
25944890 .. 25945540
651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0273300.1

Sequence Viewer

Length: 651 bp
ATGGAACCAAAAACCCAGCAACCAACCGAGGATGGAGGAAGTAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGGAGGCGGAACAGGTGGAATCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTATAGAGCAGATTCAGAGGATCTGTCTCCAGTTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCGGAAGAAGAGGTCCACTTTGGATGTTCATGTGCCCATGCAAAGATCAGGGATTGTTGGTGATGACAATGGTACCAATTGGAAACCTGAGGATCAGTATATTAACTTCGGATCTTCTGCATCTACTTTTGCTTCTTCAGCTGGTGTGATTGCTTTTAACGGGCAGATGGGGAACTATGGTGGTTATGGATCTATGGACATGGAGATTGAAACCCTTCCTCTGTTCCCCATGCATGGTGAGGACATCTTTGGTAACATGAAGACTACTTCCGATGGAGGTGGCGGTCACGGTGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGAAAAAAAATTTCCGGAGCCGCTGACTCGGCTTAGTATTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

216

Amino Acids

24.16

Weight (kDa)

9.02

Isoelectric Point (pI)

54.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 27 - 89 3.5e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22220 AT3G22220 AT3G22220 AT3G22220 AT4G15020 AT4G15020
fragaria_vesca FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_7g22891 FvH4_7g22891 FvH4_7g22891
malus_domestica MD01G1137200.v1.1 MD02G1265900.v1.1 MD07G1202100.v1.1 MD09G1137900.v1.1 MD09G1138100.v1.1 MD17G1128400.v1.1
prunus_persica Prupe.2G058600_v2.0.a1 Prupe.2G058600_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1
pyrus_communis pycom01g15800 pycom01g15810 pycom01g15840 pycom02g22730 pycom07g18920 pycom07g18930 pycom09g05900 pycom17g12060
rosa_chinensis RchiOBHm_Chr1g0368051 RchiOBHm_Chr2g0153631 RchiOBHm_Chr2g0153641 RchiOBHm_Chr7g0237231
rosa_laevigata RLG00000001022 RLG00000020718
rosa_multiflora Rmu_sc0002117.1_g000006 Rmu_sc0004952.1_g000008 Rmu_sc0005823.1_g000001 Rmu_sc0013273.1_g000001 Rmu_sc0028071.1_g000001
rosa_roxburghii Rroxscaffold_1G00016080 Rroxscaffold_2G00094830 Rroxscaffold_4G00288900
rosa_rugosa Rorug01G0338600 Rorug01G0338700 Rorug02G0441100 Rorug02G0441200 Rorug04G0167900 Rorug07G0273200 Rorug07G0273300 Rorug07G0297100 Rorug07G0297200 Rorug07G0297300
rosa_samantha Rh1AG102500 Rh1AG102600 Rh1AG102700 Rh1AG345600 Rh1BG307900 Rh1CG323500 Rh1DG340000 Rh2AG504100 Rh2BG514800 Rh2CG490100 Rh2DG526900 Rh7AG451500 Rh7AG451700 Rh7AG459100 Rh7AG459200 Rh7BG400700 Rh7BG400800 Rh7BG421300 Rh7BG421400 Rh7BG423400 Rh7BG423500 Rh7BG423800 Rh7BG423900 Rh7CG471000 Rh7CG471100 Rh7CG471200
rosa_wichuraiana Rw1G030760 Rw2G041430 Rw5G036050 Rw7G038020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 335
AccB1I GGYRCC 1 cut(s) 335
AccIII TCCGGA 1 cut(s) 619
AciI CCGC 4 cut(s) 82, 265, 546, 626
AclWI GGATC 4 cut(s) 188, 363, 382, 460
AcsI RAATTY 1 cut(s) 614
AcuI CTGAAG 1 cut(s) 384
AfaI GTAC 2 cut(s) 203, 337
AfiI CCNNNNNNNGG 1 cut(s) 497
AgsI TTSAA 3 cut(s) 196, 220, 473
AleI CACNNNNGTG 1 cut(s) 555
AluBI AGCT 4 cut(s) 130, 404, 580, 605
AluI AGCT 4 cut(s) 130, 404, 580, 605
Alw21I GWGCWC 1 cut(s) 582
Alw26I GTCTC 1 cut(s) 191
AlwI GGATC 4 cut(s) 188, 363, 382, 460
Ama87I CYCGRG 1 cut(s) 255
Aor13HI TCCGGA 1 cut(s) 619
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 1 cut(s) 614
Asp700I GAANNNNTTC 1 cut(s) 477
Asp718I GGTACC 1 cut(s) 335
AspS9I GGNCC 2 cut(s) 153, 276
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 335, 512
AvaI CYCGRG 1 cut(s) 255
AvaII GGWCC 2 cut(s) 153, 276
AxyI CCTNAGG 1 cut(s) 351
BaeGI GKGCMC 1 cut(s) 300
BaeI ACNNNNGTAYC 2 cut(s) 319, 352
BanI GGYRCC 1 cut(s) 335
BanII GRGCYC 2 cut(s) 256, 582
BarI GAAGNNNNNNTAC 2 cut(s) 353, 385
BbsI GAAGAC 1 cut(s) 530
Bbv12I GWGCWC 1 cut(s) 582
BbvI GCAGC 1 cut(s) 62
BccI CCATC 3 cut(s) 26, 424, 530
BceAI ACGGC 1 cut(s) 220
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 191
BfmI CTRYAG 2 cut(s) 102, 162
BisI GCNGC 2 cut(s) 51, 626
BlpI GCTNAGC 1 cut(s) 581
BlsI GCNGC 2 cut(s) 52, 627
Bme1390I CCNGG 1 cut(s) 55
Bme18I GGWCC 2 cut(s) 153, 276
BmeT110I CYCGRG 1 cut(s) 255
BmgT120I GGNCC 2 cut(s) 153, 276
BmiI GGNNCC 4 cut(s) 6, 155, 337, 624
BmrFI CCNGG 1 cut(s) 55
BmsI GCATC 1 cut(s) 392
BpiI GAAGAC 1 cut(s) 530
BpmI CTGGAG 1 cut(s) 173
Bpu1102I GCTNAGC 1 cut(s) 581
BpuEI CTTGAG 2 cut(s) 107, 596
BpuMI CCSGG 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 27
BsaWI WCCGGW 1 cut(s) 619
Bsc4I CCNNNNNNNGG 1 cut(s) 497
Bse1I ACTGG 1 cut(s) 190
Bse21I CCTNAGG 1 cut(s) 351
Bse8I GATNNNNATC 1 cut(s) 116
BseAI TCCGGA 1 cut(s) 619
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 37, 292
BseJI GATNNNNATC 1 cut(s) 116
BseLI CCNNNNNNNGG 1 cut(s) 497
BseMII CTCAG 2 cut(s) 342, 595
BseNI ACTGG 1 cut(s) 190
BseSI GKGCMC 1 cut(s) 300
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 15
BshNI GGYRCC 1 cut(s) 335
BsiHKAI GWGCWC 1 cut(s) 582
BsiHKCI CYCGRG 1 cut(s) 255
BsiSI CCGG 2 cut(s) 54, 620
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 497
BsmAI GTCTC 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 255
Bsp1286I GDGCHC 3 cut(s) 256, 300, 582
Bsp13I TCCGGA 1 cut(s) 619
Bsp143I GATC 7 cut(s) 106, 180, 210, 308, 355, 374, 452
Bsp1720I GCTNAGC 1 cut(s) 581
BspACI CCGC 4 cut(s) 82, 265, 546, 626
BspCNI CTCAG 2 cut(s) 343, 594
BspEI TCCGGA 1 cut(s) 619
BspLI GGNNCC 4 cut(s) 6, 155, 337, 624
BspPI GGATC 4 cut(s) 188, 363, 382, 460
BspT107I GGYRCC 1 cut(s) 335
BsrI ACTGG 1 cut(s) 190
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 7 cut(s) 106, 180, 210, 308, 355, 374, 452
Bst4CI ACNGT 1 cut(s) 554
Bst6I CTCTTC 1 cut(s) 266
BstDEI CTNAG 3 cut(s) 351, 581, 638
BstF5I GGATG 2 cut(s) 37, 292
BstKTI GATC 7 cut(s) 109, 183, 213, 311, 358, 377, 455
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 7 cut(s) 106, 180, 210, 308, 355, 374, 452
BstMWI GCNNNNNNNGC 4 cut(s) 79, 401, 591, 634
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 53
BstSFI CTRYAG 2 cut(s) 102, 162
BstSLI GKGCMC 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 530
BstX2I RGATCY 3 cut(s) 180, 374, 452
BstYI RGATCY 3 cut(s) 180, 374, 452
Bsu36I CCTNAGG 1 cut(s) 351
BtsCI GGATG 2 cut(s) 37, 292
Cfr13I GGNCC 2 cut(s) 153, 276
Csp6I GTAC 2 cut(s) 202, 336
CviAII CATG 7 cut(s) 70, 293, 301, 463, 493, 497, 520
CviQI GTAC 2 cut(s) 202, 336
DdeI CTNAG 3 cut(s) 351, 581, 638
DpnI GATC 7 cut(s) 108, 182, 212, 310, 357, 376, 454
DpnII GATC 7 cut(s) 106, 180, 210, 308, 355, 374, 452
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
EciI GGCGGA 1 cut(s) 97
Ecl136II GAGCTC 1 cut(s) 580
Eco24I GRGCYC 2 cut(s) 256, 582
Eco47I GGWCC 2 cut(s) 153, 276
Eco53kI GAGCTC 1 cut(s) 580
Eco57I CTGAAG 1 cut(s) 384
Eco81I CCTNAGG 1 cut(s) 351
Eco88I CYCGRG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 580
EcoO109I RGGNCCY 1 cut(s) 153
EcoT22I ATGCAT 1 cut(s) 498
EcoT38I GRGCYC 2 cut(s) 256, 582
FaeI CATG 7 cut(s) 73, 296, 304, 466, 496, 500, 523
FaqI GGGAC 1 cut(s) 139
FatI CATG 7 cut(s) 69, 292, 300, 462, 492, 496, 519
Fnu4HI GCNGC 2 cut(s) 51, 626
FokI GGATG 2 cut(s) 44, 299
FriOI GRGCYC 2 cut(s) 256, 582
Fsp4HI GCNGC 2 cut(s) 51, 626
GluI GCNGC 2 cut(s) 51, 626
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 173
HapII CCGG 2 cut(s) 54, 620
Hin1II CATG 7 cut(s) 73, 296, 304, 466, 496, 500, 523
HinfI GANTC 4 cut(s) 94, 117, 172, 631
HpaII CCGG 2 cut(s) 54, 620
HphI GGTGA 2 cut(s) 335, 512
Hpy166II GTNNAC 2 cut(s) 244, 279
Hpy188I TCNGA 4 cut(s) 111, 177, 374, 535
Hpy188III TCNNGA 4 cut(s) 220, 241, 257, 620
Hpy8I GTNNAC 2 cut(s) 244, 279
HpyAV CCTTC 1 cut(s) 488
HpyCH4III ACNGT 1 cut(s) 554
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 3 cut(s) 304, 383, 496
HpyF10VI GCNNNNNNNGC 4 cut(s) 79, 401, 591, 634
HpyF3I CTNAG 3 cut(s) 351, 581, 638
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 7 cut(s) 73, 296, 304, 466, 496, 500, 523
Kpn2I TCCGGA 1 cut(s) 619
KpnI GGTACC 1 cut(s) 339
Kzo9I GATC 7 cut(s) 106, 180, 210, 308, 355, 374, 452
LmnI GCTCC 2 cut(s) 127, 622
LpnPI CCDG 9 cut(s) 29, 67, 73, 203, 297, 363, 390, 604, 633
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 1 cut(s) 392
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 3 cut(s) 41, 515, 548
MalI GATC 7 cut(s) 108, 182, 212, 310, 357, 376, 454
MboI GATC 7 cut(s) 106, 180, 210, 308, 355, 374, 452
MboII GAAGA 5 cut(s) 280, 283, 369, 390, 535
MfeI CAATTG 1 cut(s) 340
MflI RGATCY 3 cut(s) 180, 374, 452
MhlI GDGCHC 3 cut(s) 256, 300, 582
MluCI AATT 2 cut(s) 340, 614
MlyI GAGTC 1 cut(s) 625
Mph1103I ATGCAT 1 cut(s) 498
MroI TCCGGA 1 cut(s) 619
MroXI GAANNNNTTC 1 cut(s) 477
MseI TTAA 2 cut(s) 366, 420
MslI CAYNNNNRTG 1 cut(s) 555
MspA1I CMGCKG 2 cut(s) 404, 628
MspI CCGG 2 cut(s) 54, 620
MspR9I CCNGG 1 cut(s) 55
MunI CAATTG 1 cut(s) 340
MwoI GCNNNNNNNGC 4 cut(s) 79, 401, 591, 634
NciI CCSGG 1 cut(s) 55
NdeII GATC 7 cut(s) 106, 180, 210, 308, 355, 374, 452
NlaIII CATG 7 cut(s) 73, 296, 304, 466, 496, 500, 523
NlaIV GGNNCC 4 cut(s) 6, 155, 337, 624
NmeAIII GCCGAG 1 cut(s) 613
NmuCI GTSAC 1 cut(s) 548
NsiI ATGCAT 1 cut(s) 498
NspI RCATGY 1 cut(s) 73
OliI CACNNNNGTG 1 cut(s) 555
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 477
PfeI GAWTC 3 cut(s) 94, 117, 172
PkrI GCNGC 2 cut(s) 52, 627
PleI GAGTC 1 cut(s) 625
PpsI GAGTC 1 cut(s) 625
PpuMI RGGWCCY 1 cut(s) 153
Psp124BI GAGCTC 1 cut(s) 582
Psp5II RGGWCCY 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 15
PspN4I GGNNCC 4 cut(s) 6, 155, 337, 624
PspPI GGNCC 2 cut(s) 153, 276
PspPPI RGGWCCY 1 cut(s) 153
PsuI RGATCY 3 cut(s) 180, 374, 452
PvuII CAGCTG 1 cut(s) 404
RsaI GTAC 2 cut(s) 203, 337
RsaNI GTAC 2 cut(s) 202, 336
RseI CAYNNNNRTG 1 cut(s) 555
SacI GAGCTC 1 cut(s) 582
SaqAI TTAA 2 cut(s) 366, 420
SatI GCNGC 2 cut(s) 51, 626
Sau3AI GATC 7 cut(s) 106, 180, 210, 308, 355, 374, 452
Sau96I GGNCC 2 cut(s) 153, 276
SchI GAGTC 1 cut(s) 625
ScrFI CCNGG 1 cut(s) 55
SduI GDGCHC 3 cut(s) 256, 300, 582
SfaNI GCATC 1 cut(s) 392
SfcI CTRYAG 2 cut(s) 102, 162
SinI GGWCC 2 cut(s) 153, 276
SmiMI CAYNNNNRTG 1 cut(s) 555
SmlI CTYRAG 2 cut(s) 122, 575
SmoI CTYRAG 2 cut(s) 122, 575
Sse9I AATT 2 cut(s) 340, 614
SsiI CCGC 4 cut(s) 82, 265, 546, 626
SstI GAGCTC 1 cut(s) 582
StyD4I CCNGG 1 cut(s) 53
TaaI ACNGT 1 cut(s) 554
TaiI ACGT 1 cut(s) 228
TaqI TCGA 1 cut(s) 213
TasI AATT 2 cut(s) 340, 614
TauI GCSGC 1 cut(s) 628
TfiI GAWTC 3 cut(s) 94, 117, 172
Tru1I TTAA 2 cut(s) 366, 420
Tru9I TTAA 2 cut(s) 366, 420
TseFI GTSAC 1 cut(s) 548
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 548
TspDTI ATGAA 2 cut(s) 281, 536
VpaK11BI GGWCC 2 cut(s) 153, 276
XapI RAATTY 1 cut(s) 614
XceI RCATGY 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 477
Zsp2I ATGCAT 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.