pycom17g12060

Protein of unknown function (DUF 659)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
9827050 .. 9828567
1518 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g12060.1

Sequence Viewer

Length: 1518 bp
ATGATATCTTTAGACGGTTTTGAGCCCGTAGCTGTTTCTCCCCAGAAACAAGACCCGGCATGGAAACACTGCCAACTTTTCATGAAAGACCAACCCAATGGGGGTAAAGTTGAGTTGAAAAAGTGTATATATTGTGGCAAATTGTTTCAGGGTGGTGGGATTAATCGCCTTAAATCCCACCTTGCCGGTCGGAAGGGCAATGGCCCCACCTGTGATCAGGCCCCGCCCGATGTTAGAATCATAATGTTGCAGAGTTTGGATGATGGGATTGCAGCGTTTAGGCAGAGGAAGAGTCATATTGTTGCTAACCCACATTGTAGCATTAGCGAAATTGACGGTTCAATAGGCGAAAATGGAGAGTATAAATTGGTTGTAGGACCGAATGCGTTGGTGAATGATGAGGAGGTTGGTGGGTTGAGTGGGAATGGAGGAATTAGGTTAACTGATAATTTGACTAATGTGCCCATTGAAGTAGATAATTCTTATAGGAGTAATGCTCAGCAGGGATTAATTGGAGTGGCCGGATTGGATTTTTCGGTAGATGAAGTGGAAGAGGAAGATGGTGGGACGAGTGTTGATCGAGGAGTACAGCAGAGGGGTAGACCTTCTGGTGGTGCTACCGGTTCTGGTACAGTTAATGGCGTTACGAAATTTAGTGTTTCCCCTCCTTTTCCTATTTCAGTAGGCAATGCTTTTCCCAATTCAACTTTTTCACAAAACCAAGAAGAAGTTGGCATCAAACTGAATTTTTCGGTAGATCAGGAAGAAGATGTTGGATTGAGTGTTGATAGAAGAGTAAGGCGGAGGGGTACACCTTGTAAAGCAGCTACTGGTTCTGGTTCAGTTAATGGTGTTACGAAATTGAGTAATGCTTCACCTCCTGTTCCTATTGCAATAGGTAATGCTTTTCCCAATTCAAATTTGTTGGAAAATGAAGAAGTTGGCATAAGTAATACAAATGTGAGTAGGAAGAGGGTAAGGGATGAAAATGCTTCCTGGGCTGCCAATGATGGAACCATAGGCAATGATTACGAGGTAACGAGGTTGAGCATTGAACAGATTCATATGGCAATTGGTCGGTTTTTGTATGAAATTCAGGCTCCCCTGGATGCTGTAAAGAACTCTGTTTATTTCCAGCCAATGATTGATGCAATTGCCTCTGGGGGAAAGGAGACTGTAGCACCCTCATATGATGACATTCGGGGTTGGATGTTGAAGAATGCAGTTGAAGAGGTGAAGAGTGAAATTCAACAACACAAGGAAATGTGGGTGAGGACGGGCTGTTCTCTTCTAGTCAACCAATGGAATTCTGAAAAGGGTAGAACTTTGCTAAATTTTGCTGTGTACTGTCCTGAAGGAACAATCTATTTGAAATCTGTGGATGCTTCTTATTTTGTTTTTTCTCCAGATGCTTTGTTCGCATTTGTAAGGAAGTGGTGGAAGAAATTGGAGTTGGACATGTTTTGCAAGTCATTGCAAATACTGAAGAGCAGTTTTCTGTTGTTGGGAAGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

506

Amino Acids

54.92

Weight (kDa)

5.72

Isoelectric Point (pI)

34.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF659 PF04937 395 - 478 7.3e-25 Domain of unknown function (DUF659)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22220 AT3G22220 AT3G22220 AT3G22220 AT4G15020 AT4G15020
fragaria_vesca FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_7g22891 FvH4_7g22891 FvH4_7g22891
malus_domestica MD01G1137200.v1.1 MD02G1265900.v1.1 MD07G1202100.v1.1 MD09G1137900.v1.1 MD09G1138100.v1.1 MD17G1128400.v1.1
prunus_persica Prupe.2G058600_v2.0.a1 Prupe.2G058600_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1
pyrus_communis pycom01g15800 pycom01g15810 pycom01g15840 pycom02g22730 pycom07g18920 pycom07g18930 pycom09g05900 pycom17g12060
rosa_chinensis RchiOBHm_Chr1g0368051 RchiOBHm_Chr2g0153631 RchiOBHm_Chr2g0153641 RchiOBHm_Chr7g0237231
rosa_laevigata RLG00000001022 RLG00000020718
rosa_multiflora Rmu_sc0002117.1_g000006 Rmu_sc0004952.1_g000008 Rmu_sc0005823.1_g000001 Rmu_sc0013273.1_g000001 Rmu_sc0028071.1_g000001
rosa_roxburghii Rroxscaffold_1G00016080 Rroxscaffold_2G00094830 Rroxscaffold_4G00288900
rosa_rugosa Rorug01G0338600 Rorug01G0338700 Rorug02G0441100 Rorug02G0441200 Rorug04G0167900 Rorug07G0273200 Rorug07G0273300 Rorug07G0297100 Rorug07G0297200 Rorug07G0297300
rosa_samantha Rh1AG102500 Rh1AG102600 Rh1AG102700 Rh1AG345600 Rh1BG307900 Rh1CG323500 Rh1DG340000 Rh2AG504100 Rh2BG514800 Rh2CG490100 Rh2DG526900 Rh7AG451500 Rh7AG451700 Rh7AG459100 Rh7AG459200 Rh7BG400700 Rh7BG400800 Rh7BG421300 Rh7BG421400 Rh7BG423400 Rh7BG423500 Rh7BG423800 Rh7BG423900 Rh7CG471000 Rh7CG471100 Rh7CG471200
rosa_wichuraiana Rw1G030760 Rw2G041430 Rw5G036050 Rw7G038020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 601
AciI CCGC 2 cut(s) 224, 802
AcoI YGGCCR 1 cut(s) 519
AcsI RAATTY 7 cut(s) 650, 745, 919, 1092, 1245, 1306, 1333
AcuI CTGAAG 2 cut(s) 1374, 1505
AfaI GTAC 4 cut(s) 588, 631, 811, 1346
AfiI CCNNNNNNNGG 2 cut(s) 101, 611
AflIII ACRYGT 1 cut(s) 1458
AgeI ACCGGT 1 cut(s) 620
AjnI CCWGG 2 cut(s) 995, 1104
AjuI GAANNNNNNNTTGG 4 cut(s) 756, 788, 1436, 1468
AloI GAACNNNNNNTCC 2 cut(s) 1267, 1299
AluBI AGCT 2 cut(s) 32, 827
AluI AGCT 2 cut(s) 32, 827
Alw26I GTCTC 1 cut(s) 1166
AlwNI CAGNNNCTG 1 cut(s) 830
AoxI GGCC 3 cut(s) 202, 219, 519
ApeKI GCWGC 3 cut(s) 272, 824, 1001
ApoI RAATTY 7 cut(s) 650, 745, 919, 1092, 1245, 1306, 1333
AseI ATTAAT 2 cut(s) 162, 509
AsiGI ACCGGT 1 cut(s) 620
Asp700I GAANNNNTTC 1 cut(s) 1059
AspS9I GGNCC 3 cut(s) 203, 220, 377
AsuC2I CCSGG 1 cut(s) 56
AsuHPI GGTGA 4 cut(s) 403, 867, 1246, 1282
AvaII GGWCC 1 cut(s) 377
BaeGI GKGCMC 1 cut(s) 465
BanII GRGCYC 1 cut(s) 27
BbvI GCAGC 3 cut(s) 284, 836, 988
BccI CCATC 3 cut(s) 257, 554, 1004
BciT130I CCWGG 2 cut(s) 997, 1106
BclI TGATCA 1 cut(s) 214
BcnI CCSGG 1 cut(s) 56
BcoDI GTCTC 1 cut(s) 1166
BfaI CTAG 1 cut(s) 1292
BfmI CTRYAG 1 cut(s) 1176
BisI GCNGC 3 cut(s) 273, 825, 1002
BlpI GCTNAGC 1 cut(s) 498
BlsI GCNGC 3 cut(s) 274, 826, 1003
Bme1390I CCNGG 3 cut(s) 56, 997, 1106
Bme18I GGWCC 1 cut(s) 377
BmgT120I GGNCC 3 cut(s) 203, 220, 377
BmiI GGNNCC 4 cut(s) 205, 222, 1015, 1101
BmrFI CCNGG 3 cut(s) 56, 997, 1106
BmsI GCATC 5 cut(s) 744, 1099, 1138, 1372, 1399
BplI GAGNNNNNCTC 2 cut(s) 481, 513
BpmI CTGGAG 1 cut(s) 1389
Bpu1102I GCTNAGC 1 cut(s) 498
BpuMI CCSGG 1 cut(s) 56
BsaJI CCNNGG 2 cut(s) 996, 1104
BsaWI WCCGGW 1 cut(s) 620
Bsc4I CCNNNNNNNGG 2 cut(s) 101, 611
Bse118I RCCGGY 2 cut(s) 185, 620
Bse1I ACTGG 1 cut(s) 835
Bse3DI GCAATG 4 cut(s) 205, 694, 1030, 1472
BseBI CCWGG 2 cut(s) 997, 1106
BseDI CCNNGG 2 cut(s) 996, 1104
BseGI GGATG 5 cut(s) 265, 988, 1114, 1215, 1387
BseLI CCNNNNNNNGG 2 cut(s) 101, 611
BseMI GCAATG 4 cut(s) 205, 694, 1030, 1472
BseMII CTCAG 1 cut(s) 512
BseNI ACTGG 1 cut(s) 835
BseRI GAGGAG 2 cut(s) 416, 597
BseSI GKGCMC 1 cut(s) 465
BseXI GCAGC 3 cut(s) 284, 836, 988
Bsh1285I CGRYCG 1 cut(s) 190
BshFI GGCC 3 cut(s) 204, 221, 521
BshTI ACCGGT 1 cut(s) 620
BsiEI CGRYCG 1 cut(s) 190
BsiSI CCGG 4 cut(s) 56, 186, 522, 621
BslFI GGGAC 1 cut(s) 580
BslI CCNNNNNNNGG 2 cut(s) 101, 611
BsmAI GTCTC 1 cut(s) 1166
BsmFI GGGAC 1 cut(s) 580
BsmI GAATGC 2 cut(s) 388, 1225
BsnI GGCC 3 cut(s) 204, 221, 521
Bsp1286I GDGCHC 2 cut(s) 27, 465
Bsp143I GATC 3 cut(s) 214, 577, 757
Bsp1720I GCTNAGC 1 cut(s) 498
BspACI CCGC 2 cut(s) 224, 802
BspANI GGCC 3 cut(s) 204, 221, 521
BspCNI CTCAG 1 cut(s) 511
BspHI TCATGA 1 cut(s) 81
BspLI GGNNCC 4 cut(s) 205, 222, 1015, 1101
BspQI GCTCTTC 1 cut(s) 1481
BsrDI GCAATG 4 cut(s) 205, 694, 1030, 1472
BsrFI RCCGGY 2 cut(s) 185, 620
BsrI ACTGG 1 cut(s) 835
BssAI RCCGGY 2 cut(s) 185, 620
BssECI CCNNGG 2 cut(s) 996, 1104
BssMI GATC 3 cut(s) 214, 577, 757
Bst2UI CCWGG 2 cut(s) 997, 1106
Bst4CI ACNGT 5 cut(s) 17, 338, 634, 1177, 1349
Bst6I CTCTTC 8 cut(s) 284, 546, 787, 965, 1224, 1232, 1293, 1481
BstDEI CTNAG 1 cut(s) 498
BstF5I GGATG 5 cut(s) 265, 988, 1114, 1215, 1387
BstKTI GATC 3 cut(s) 217, 580, 760
BstMAI GTCTC 1 cut(s) 1166
BstMBI GATC 3 cut(s) 214, 577, 757
BstMCI CGRYCG 1 cut(s) 190
BstMWI GCNNNNNNNGC 2 cut(s) 998, 1418
BstNI CCWGG 2 cut(s) 997, 1106
BstNSI RCATGY 1 cut(s) 1462
BstSCI CCNGG 3 cut(s) 54, 995, 1104
BstSFI CTRYAG 1 cut(s) 1176
BstSLI GKGCMC 1 cut(s) 465
BstV1I GCAGC 3 cut(s) 284, 836, 988
BstXI CCANNNNNNTGG 1 cut(s) 98
BsuRI GGCC 3 cut(s) 204, 221, 521
BtsCI GGATG 5 cut(s) 265, 988, 1114, 1215, 1387
BtsI GCAGTG 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 67
CaiI CAGNNNCTG 1 cut(s) 830
CciI TCATGA 1 cut(s) 81
Cfr10I RCCGGY 2 cut(s) 185, 620
Cfr13I GGNCC 3 cut(s) 203, 220, 377
Csp6I GTAC 4 cut(s) 587, 630, 810, 1345
CspAI ACCGGT 1 cut(s) 620
CviAII CATG 3 cut(s) 60, 82, 1459
CviQI GTAC 4 cut(s) 587, 630, 810, 1345
DdeI CTNAG 1 cut(s) 498
DpnI GATC 3 cut(s) 216, 579, 759
DpnII GATC 3 cut(s) 214, 577, 757
EaeI YGGCCR 1 cut(s) 519
Eam1104I CTCTTC 8 cut(s) 284, 546, 787, 965, 1224, 1232, 1293, 1481
EarI CTCTTC 8 cut(s) 284, 546, 787, 965, 1224, 1232, 1293, 1481
EciI GGCGGA 1 cut(s) 817
Eco24I GRGCYC 1 cut(s) 27
Eco32I GATATC 1 cut(s) 6
Eco47I GGWCC 1 cut(s) 377
Eco57I CTGAAG 2 cut(s) 1374, 1505
EcoO109I RGGNCCY 1 cut(s) 220
EcoRI GAATTC 1 cut(s) 1306
EcoRII CCWGG 2 cut(s) 995, 1104
EcoRV GATATC 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 27
FaeI CATG 3 cut(s) 63, 85, 1462
FaqI GGGAC 1 cut(s) 580
FatI CATG 3 cut(s) 59, 81, 1458
FauI CCCGC 1 cut(s) 231
FauNDI CATATG 2 cut(s) 1065, 1189
FbaI TGATCA 1 cut(s) 214
FblI GTMKAC 1 cut(s) 601
Fnu4HI GCNGC 3 cut(s) 273, 825, 1002
FokI GGATG 5 cut(s) 272, 995, 1121, 1222, 1394
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 3 cut(s) 273, 825, 1002
FspBI CTAG 1 cut(s) 1292
GluI GCNGC 3 cut(s) 273, 825, 1002
GsuI CTGGAG 1 cut(s) 1389
HaeIII GGCC 3 cut(s) 204, 221, 521
HapII CCGG 4 cut(s) 56, 186, 522, 621
Hin1II CATG 3 cut(s) 63, 85, 1462
HincII GTYRAC 2 cut(s) 441, 1297
HindII GTYRAC 2 cut(s) 441, 1297
HinfI GANTC 3 cut(s) 237, 292, 1060
HpaI GTTAAC 1 cut(s) 441
HpaII CCGG 4 cut(s) 56, 186, 522, 621
HphI GGTGA 4 cut(s) 403, 867, 1246, 1282
Hpy166II GTNNAC 5 cut(s) 441, 602, 812, 1297, 1345
Hpy188I TCNGA 2 cut(s) 192, 1312
Hpy188III TCNNGA 4 cut(s) 82, 761, 1352, 1406
Hpy8I GTNNAC 5 cut(s) 441, 602, 812, 1297, 1345
HpyAV CCTTC 3 cut(s) 187, 615, 1349
HpyCH4III ACNGT 5 cut(s) 17, 338, 634, 1177, 1349
HpyCH4V TGCA 7 cut(s) 250, 272, 893, 1151, 1223, 1467, 1477
HpyF10VI GCNNNNNNNGC 2 cut(s) 998, 1418
HpyF3I CTNAG 1 cut(s) 498
Hsp92II CATG 3 cut(s) 63, 85, 1462
Ksp22I TGATCA 1 cut(s) 214
KspAI GTTAAC 1 cut(s) 441
Kzo9I GATC 3 cut(s) 214, 577, 757
LguI GCTCTTC 1 cut(s) 1481
LmnI GCTCC 1 cut(s) 1105
Lsp1109I GCAGC 3 cut(s) 284, 836, 988
LweI GCATC 5 cut(s) 744, 1099, 1138, 1372, 1399
MaeI CTAG 1 cut(s) 1292
MaeIII GTNAC 3 cut(s) 643, 853, 1036
MalI GATC 3 cut(s) 216, 579, 759
MboI GATC 3 cut(s) 214, 577, 757
MfeI CAATTG 2 cut(s) 1071, 1152
MhlI GDGCHC 2 cut(s) 27, 465
MlyI GAGTC 1 cut(s) 301
MmeI TCCRAC 5 cut(s) 170, 754, 906, 1187, 1434
MroXI GAANNNNTTC 1 cut(s) 1059
MseI TTAA 6 cut(s) 162, 171, 440, 509, 636, 846
MspI CCGG 4 cut(s) 56, 186, 522, 621
MspR9I CCNGG 3 cut(s) 56, 997, 1106
MunI CAATTG 2 cut(s) 1071, 1152
Mva1269I GAATGC 2 cut(s) 388, 1225
MvaI CCWGG 2 cut(s) 997, 1106
MwoI GCNNNNNNNGC 2 cut(s) 998, 1418
NciI CCSGG 1 cut(s) 56
NdeI CATATG 2 cut(s) 1065, 1189
NdeII GATC 3 cut(s) 214, 577, 757
NlaIII CATG 3 cut(s) 63, 85, 1462
NlaIV GGNNCC 4 cut(s) 205, 222, 1015, 1101
NspI RCATGY 1 cut(s) 1462
PagI TCATGA 1 cut(s) 81
PciI ACATGT 1 cut(s) 1458
PciSI GCTCTTC 1 cut(s) 1481
PctI GAATGC 2 cut(s) 388, 1225
PdmI GAANNNNTTC 1 cut(s) 1059
PfeI GAWTC 2 cut(s) 237, 1060
PinAI ACCGGT 1 cut(s) 620
PkrI GCNGC 3 cut(s) 274, 826, 1003
PleI GAGTC 1 cut(s) 300
PpsI GAGTC 1 cut(s) 300
PscI ACATGT 1 cut(s) 1458
PshBI ATTAAT 2 cut(s) 162, 509
Psp6I CCWGG 2 cut(s) 995, 1104
PspGI CCWGG 2 cut(s) 995, 1104
PspN4I GGNNCC 4 cut(s) 205, 222, 1015, 1101
PspPI GGNCC 3 cut(s) 203, 220, 377
PstNI CAGNNNCTG 1 cut(s) 830
RsaI GTAC 4 cut(s) 588, 631, 811, 1346
RsaNI GTAC 4 cut(s) 587, 630, 810, 1345
SapI GCTCTTC 1 cut(s) 1481
SaqAI TTAA 6 cut(s) 162, 171, 440, 509, 636, 846
SatI GCNGC 3 cut(s) 273, 825, 1002
Sau3AI GATC 3 cut(s) 214, 577, 757
Sau96I GGNCC 3 cut(s) 203, 220, 377
SchI GAGTC 1 cut(s) 301
ScrFI CCNGG 3 cut(s) 56, 997, 1106
SduI GDGCHC 2 cut(s) 27, 465
SfaNI GCATC 5 cut(s) 744, 1099, 1138, 1372, 1399
SfcI CTRYAG 1 cut(s) 1176
SinI GGWCC 1 cut(s) 377
SsiI CCGC 2 cut(s) 224, 802
SspMI CTAG 1 cut(s) 1292
StyD4I CCNGG 3 cut(s) 54, 995, 1104
TaaI ACNGT 5 cut(s) 17, 338, 634, 1177, 1349
TaqI TCGA 1 cut(s) 580
TaqII GACCGA 1 cut(s) 394
TatI WGTACW 2 cut(s) 586, 1344
TfiI GAWTC 2 cut(s) 237, 1060
Tru1I TTAA 6 cut(s) 162, 171, 440, 509, 636, 846
Tru9I TTAA 6 cut(s) 162, 171, 440, 509, 636, 846
TscAI CASTG 1 cut(s) 74
TseI GCWGC 3 cut(s) 272, 824, 1001
TspDTI ATGAA 7 cut(s) 70, 98, 558, 948, 999, 1052, 1104
TspRI CASTG 1 cut(s) 74
VpaK11BI GGWCC 1 cut(s) 377
VspI ATTAAT 2 cut(s) 162, 509
XapI RAATTY 7 cut(s) 650, 745, 919, 1092, 1245, 1306, 1333
XceI RCATGY 1 cut(s) 1462
XcmI CCANNNNNNNNNTGG 1 cut(s) 728
XmiI GTMKAC 1 cut(s) 601
XmnI GAANNNNTTC 1 cut(s) 1059
XspI CTAG 1 cut(s) 1292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.