Rorug07G0297100

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000444
Physical Location & Seq
Forward (+)
29277645 .. 29284058
6414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0297100.1

Sequence Viewer

Length: 4419 bp
ATGACGGCGGAGGTGGATGTGCATCGCGATGCGTGTGAATCTGAGGTGTCCAAGGTTGAGGACGGGAATGTGAGTGTCAATGTCAGTGTGATTGGTAATGGTAATGGTAATGGTAATGGTAATGGGATTTCCAAGGACGACGGCGATGGCTCCTATGTCTTTGTCACCGCCGGAAGTGACGCCGCCGCTTCTGATGGGTCTGATCTGACCAATGGGCATTACAGCAGAGTTGAGACCAATGGCGGTGGCGGTCTTCAGTTGGAGGGAGAGGTTGTGGAGAGTAGTGTTGTTGTTGAGAATCCCCAATCTCAATTACAATCTCATTCATTAGAGAACGCTGCTCCTGCTGCTGAGGAGTCAACACTTTCCGGTGATCCAGCGACTGCACTTCATCTTCAGAGTGAGGAGGATAAGCAATTAGCCGAGGAGGTCCCTGTTCAAGAGTCAGAGTTGACATCCCAAGCTGATACTGAGTTGGATAAGCAAATTCCTGAGTCAAAGGAAAATAATTGGGAGGGCGTGCCTGCTTGTGATGCTAATGATAGCGCCTCAGCAAGTACAGCTGAACAAAATGGATCTTCTGAGAATGGCCGATCCGGGGCTGCTGTCTCTGATGAAAATGGAGATGCATTGCCTACTCATGATGTCCAAGAGAGCCCTTCAGAGTCCTTGGTCACAAATCACTTGGTTGATACAGCTGAAAAGAATAATGGGTCATTTTCTAATGGCCAAATCTTGGCTGCCAATCTTGATGTCCAAGAGAGCTTTTCAGAGCCTGTTGCTGAGGAGATTAACGGTTCATGTGAACAAGACGGCCAAAACTTGGCTGCCAATGGTGATGTTAAAGAGTGTGTTTCGGACGGCCAAATCTTGGCTGCCAATTGTGATGTTAAAGAGTGTGTTTCAGACGTCCAAATCTTGGCTGCTAATGATGATGTCCAAGAGAGTGTTTCAGAATCAATTACTGAAAAGATTAATGTTTCATGTGAAGAAAATGGCCAAATCTTGGCTGCCAATGTAGATGTCCAAGAGAGTGTTTCCGAGCCCATTGCTGAAAAGATTAATAGTTCCTGTGAAGAAAATGGCCAAATATTGGCTGCCAATCTTGATATCCAAGAGAGCGTTTCGGAACCCATTGCTGAACAGATTGATGGTTTATGTGAAGAAAATGGCCAAGTCTTGGATGCCAATGTTGATGTCCAAGAGAGTGTTTCCGAGCCCATTGCTGAAAAGATTAACGAGTCATGTGAAGAAAATGGCCAAATATTGGCTACCAATGTTGATATCCAAGAGAGCATTTCGGAGCACATGGCTGAAAAAATTAATGGTTTATGTGAAGAAAATGGCCAAATCTTGGCAGACAATTTGGAAGTCCAGAAGCACTTGGAAACACAAGTTGTCAATGGTCTTGTTTCTGATAAATCTGAAGATGAGTCGCTTGTCGTTCGTGCTCATGAAGAGAGCGTTTCAGAGCCCATAGATACTAATCTCTTGACTGATACACCTGAAGAAAACGGATCATGTGAAAATGGGGAAGTCTTGGCTGCATCTTTTGAAGTTCAGAAGCAGTTGGAAACACCAGTTGTCAGTGGCCCTATCTCAGATGATAGTGGGGATAACTTGGAGAACAGTTCAGAACCTATGGTTACAGATGACTTGGTTGATACACCTGAAGAGAATGGGTCATCTGAAAAGGCTTCTGTGTGTGAGAAAGTACCTGTTGAAAATTGTGAAAGCTTTGCAACTGTTGCTGATAGTGATACAATTGTGAGTGTTAAAAACGGGGATTCTCTACCTAAGGAAGATGATTCAACTCGCAGTATTGAAGATGAAACACCAGAGACTGATGTTGAAAAATTAGATGAGAAGAATAGTGAAAAGCTGAGTTCTTGTCCTCGTGAACATTCAAAACCAGAAGTTGAAGCTGAGAGTGCCCCCATTACTGCTGAAACTTCTTCAAATTCCGCAGCTAATGATACAATATCAGAACCAAATTCAAAATCTGATATTGAAGCTGAGATTTCCTCCGATACAGATGATGCTCTCTCAAGTGGCCTAGCTCATGACGCAGTATCAGCTAGCGTCGCTATATCAGAACCTAATTTGAAATCAGAAATTGAATCTGGTCATGCTGCCTTTGTAGATGATACGCTGTCAAGTTGCCTGGCTAATGATACCATATCAGAGCCCATTTCAAAATCAGAATGTGAATCCAAGATCTCTCAAGCTGTTGATGATACGCTGTCAACTTTCTCAGCTGATGATGCAATACAAGAACTCAAGACCAGCCATGATTCTTGTGATTCTGAAAAACCGGTATCTAGTGATGCCGTGCATGTAGCAGATGCTGGTTTGTCAAACTTGGAGGCTGAATGTGCTGACAACAATGGGAAGCCGACATTACAGATAAATGATTTAGTTGAGAATGAAGTCACCGTGCCGGCAAGCTCAGGTGCTGATGAGCCGTCCATCATCATTGATGACAGATCAGAGTCTGAAGTGCCCAACTTGGACGCTGAATGTGCTGACAACAATGGGAAGCCGGCATTACAGATTAATGATTCAATTGAGAATGAAGTCACCATGGCGGCAAGCTCAGGTGTTGATGAGTCGTCCATCATCACTGATGACAGATCAGAGTCTGAAACGCCCACTGTTGATTCTTTGGAAGGACAGGATAAGGTTGTTGAGGTTGAAAAAAGGCCTTTCTACTTCTTAATTAGGATTCCTAGAAATGATGACGAAAACTTAAAAGAACAGATCAAGCATGCTCAGTTACAAGTTGAAGAAAAAACTAAAGGCCGGGATGCTATTCGTTCCAAAATGCAAATGCAACGGGCCACTTGTAAGGAGCACAAACTAAAATTTGAAGCTGCCATATCTGAAGAGAGAGCTGTTCAAGAGCAGCTCAAGTCCAAACGACGGGAAATGGATTCTGTTCAATTTATGATTAACAAAGTAAAGGATGCTCTGTCTGTTGAGGAAATAGCTAACACAATACGCCATATGGAACATACCATGGCTCATGAGACCCTACCTTTGAAGGAAGAAAAGCAGTATATTCGTGACATCAAGCAGCTGAAGCAACGCCGTGATCAGCTCTCTTATAGCTTAAGTAAGCAGGATGAAGTTCAACAATCTTTGGACCAGAAAGACCATATTGAACAACGCATAAAGGATCTGAAGAAGGAAATGGATCAACTCAAAGAGAATCTTCTCAAAGCGCAGGAAGTCACTCAAGCTGCTAAAAAGAAATATAATGTAGAGAATGATATGCTGCATGAACTACAATATCAGTTTGAAGCTGCAGATGCAACTCGCCAAGAAGCATATGTACATCTACAGAGTTTGAGGAAACAAAATTATGAGAAGACCAAACACTTCTGGAGGTACAGGAATGATGCAAAGGCAGCTAATGACTTAGCATTGAGTGGAGATAAGGAGCAACTGCAGCATTTATGTATCAATCAGGTGGAAACATTTATGGAACTCTGGAATACAAATGAAGATTTCCGGAAAGAATATACCAAATGCAACACCAGGAGTACACTAAGGAGATTAAGAACCTTGGATGGCCGCTCACTTGGTCCTGATGAAGAACCACCTGTAATACCTGATATAGTAAGAGTAACCAGGCATAATATGGCAGCAGCAGTGGTTTCAACTCCTGAACCTGCAAAACGAGTTGCAATTGTAGAATCTGAAGAACCAAATGATATATCTGCAGTGGAGATTGTGGAGCAAAACAATGACACAGCTAAGAACAAGAAGCCTGTGAAAGTTGCTTCTTCTGGAATTAGCCAAGCAACAGTTTCTGGAAGAAATGAGATTGAAAAGGAAATAGTAGAAGACCCAAAACCAACAAAGGAGGAAGAAGAGTTGGCCAGAAAGGAAGAGGAATTGAGAAAGGAAGAAGCAGCTGCAAGGTTGAGAGAGCAACGTAGGCTGGAGGAAAAGGCCAAAGCTAAGGAAGCAATGGAGAGGAAGAAAAGAATAGCGGAGAAGGCCCAAGCCAGGGCTGCCATAAAAGCACAGAAAGAAGCTGAAGAGAAAGAGAAGGAAAGGGAGAAGCGGGTAAGGAAGAAGGAAAGAAAGAAGGTAAGTGCAACAAAGGCTACAAATGGTATTAATGAAGGAGAATCTGCTCCAGAACCAACCTCAGAGACTACAACCGTAACTCCAGTCGAGCCTGAAGCTACAGAGAAACCGGTGACAATAACAAAGAGGTCCCAGAAAGCGCCACAGTTCACAAAGCAAACCAAGGTAAAATCCATCCCTCTGCCTCTACGCAACCGCAGTAAGAGAAGGATGCAGCCTTGGATGTGGGTGCTTGTTACAGTTGTGGCCATCCTTGGCTTGTTTTTGTTGGGCAATGGCGGCAGCTTCTCTTTTAAATCTATGCTTGAGAGGTTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

1472

Amino Acids

161.09

Weight (kDa)

4.49

Isoelectric Point (pI)

49.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22220 AT3G22220 AT3G22220 AT3G22220 AT4G15020 AT4G15020
fragaria_vesca FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_7g22891 FvH4_7g22891 FvH4_7g22891
malus_domestica MD01G1137200.v1.1 MD02G1265900.v1.1 MD07G1202100.v1.1 MD09G1137900.v1.1 MD09G1138100.v1.1 MD17G1128400.v1.1
prunus_persica Prupe.2G058600_v2.0.a1 Prupe.2G058600_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1
pyrus_communis pycom01g15800 pycom01g15810 pycom01g15840 pycom02g22730 pycom07g18920 pycom07g18930 pycom09g05900 pycom17g12060
rosa_chinensis RchiOBHm_Chr1g0368051 RchiOBHm_Chr2g0153631 RchiOBHm_Chr2g0153641 RchiOBHm_Chr7g0237231
rosa_laevigata RLG00000001022 RLG00000020718
rosa_multiflora Rmu_sc0002117.1_g000006 Rmu_sc0004952.1_g000008 Rmu_sc0005823.1_g000001 Rmu_sc0013273.1_g000001 Rmu_sc0028071.1_g000001
rosa_roxburghii Rroxscaffold_1G00016080 Rroxscaffold_2G00094830 Rroxscaffold_4G00288900
rosa_rugosa Rorug01G0338600 Rorug01G0338700 Rorug02G0441100 Rorug02G0441200 Rorug04G0167900 Rorug07G0273200 Rorug07G0273300 Rorug07G0297100 Rorug07G0297200 Rorug07G0297300
rosa_samantha Rh1AG102500 Rh1AG102600 Rh1AG102700 Rh1AG345600 Rh1BG307900 Rh1CG323500 Rh1DG340000 Rh2AG504100 Rh2BG514800 Rh2CG490100 Rh2DG526900 Rh7AG451500 Rh7AG451700 Rh7AG459100 Rh7AG459200 Rh7BG400700 Rh7BG400800 Rh7BG421300 Rh7BG421400 Rh7BG423400 Rh7BG423500 Rh7BG423800 Rh7BG423900 Rh7CG471000 Rh7CG471100 Rh7CG471200
rosa_wichuraiana Rw1G030760 Rw2G041430 Rw5G036050 Rw7G038020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 912
Acc36I ACCTGC 1 cut(s) 3682
AccB7I CCANNNNNTGG 9 cut(s) 736, 823, 871, 919, 1006, 1093, 1180, 1267, 1354
AccBSI CCGCTC 1 cut(s) 3579
AccII CGCG 1 cut(s) 27
AccIII TCCGGA 1 cut(s) 3513
AclWI GGATC 6 cut(s) 368, 583, 588, 1525, 3186, 3204
AcsI RAATTY 4 cut(s) 486, 1960, 1993, 2864
AcyI GRCGYC 2 cut(s) 180, 909
AfaI GTAC 5 cut(s) 559, 1716, 3336, 3392, 3547
AflII CTTAAG 1 cut(s) 3112
AgeI ACCGGT 2 cut(s) 2314, 4207
AjnI CCWGG 4 cut(s) 2163, 3539, 3632, 4013
Alw21I GWGCWC 3 cut(s) 1308, 1453, 2856
Alw26I GTCTC 5 cut(s) 227, 613, 1835, 3023, 4157
AlwI GGATC 6 cut(s) 368, 583, 588, 1525, 3186, 3204
AlwNI CAGNNNCTG 8 cut(s) 383, 776, 1844, 2348, 2456, 2495, 2642, 3815
Aor13HI TCCGGA 1 cut(s) 3513
ApoI RAATTY 4 cut(s) 486, 1960, 1993, 2864
ArsI GACNNNNNNTTYG 2 cut(s) 3022, 3054
AseI ATTAAT 5 cut(s) 975, 1062, 1323, 2556, 4128
AsiGI ACCGGT 2 cut(s) 2314, 4207
AspLEI GCGC 3 cut(s) 548, 3226, 4240
AspS9I GGNCC 7 cut(s) 430, 1592, 2838, 3145, 3587, 4006, 4227
AsuC2I CCSGG 2 cut(s) 598, 2804
AsuHPI GGTGA 6 cut(s) 157, 383, 848, 2425, 2572, 4222
AsuNHI GCTAGC 1 cut(s) 2078
AvaII GGWCC 4 cut(s) 430, 3145, 3587, 4227
AxyI CCTNAGG 1 cut(s) 1797
BaeGI GKGCMC 2 cut(s) 1936, 2505
BaeI ACNNNNGTAYC 2 cut(s) 1752, 1785
BalI TGGCCA 8 cut(s) 729, 999, 1086, 1173, 1260, 1347, 3884, 4346
BanII GRGCYC 5 cut(s) 659, 1047, 1221, 1476, 2190
BarI GAAGNNNNNNTAC 2 cut(s) 3318, 3350
BauI CACGAG 1 cut(s) 1896
BbsI GAAGAC 3 cut(s) 245, 3377, 3855
Bbv12I GWGCWC 3 cut(s) 1308, 1453, 2856
BbvCI CCTCAGC 3 cut(s) 351, 550, 783
BccI CCATC 8 cut(s) 140, 188, 1145, 2477, 2624, 3566, 4280, 4355
BceAI ACGGC 7 cut(s) 21, 157, 829, 877, 2315, 2449, 3075
BcgI CGANNNNNNTGC 6 cut(s) 1031, 1065, 1205, 1239, 3044, 3078
BciT130I CCWGG 4 cut(s) 2165, 3541, 3634, 4015
BclI TGATCA 1 cut(s) 3094
BcnI CCSGG 2 cut(s) 598, 2804
BcoDI GTCTC 5 cut(s) 227, 613, 1835, 3023, 4157
BfaI CTAG 4 cut(s) 2057, 2079, 2322, 2730
BfmI CTRYAG 5 cut(s) 3306, 3341, 3449, 3723, 4197
BfoI RGCGCY 2 cut(s) 549, 4241
BfrI CTTAAG 1 cut(s) 3112
BfuAI ACCTGC 1 cut(s) 3682
BglII AGATCT 1 cut(s) 2217
Bme1390I CCNGG 6 cut(s) 598, 2165, 2804, 3541, 3634, 4015
Bme18I GGWCC 4 cut(s) 430, 3145, 3587, 4227
BmgT120I GGNCC 7 cut(s) 430, 1592, 2838, 3145, 3587, 4006, 4227
BmiI GGNNCC 4 cut(s) 151, 432, 1131, 4229
BmrFI CCNGG 6 cut(s) 598, 2165, 2804, 3541, 3634, 4015
BmtI GCTAGC 1 cut(s) 2082
BpiI GAAGAC 3 cut(s) 245, 3377, 3855
BplI GAGNNNNNCTC 2 cut(s) 2009, 2041
BpmI CTGGAG 4 cut(s) 3406, 3968, 4131, 4164
Bpu10I CCTNAGC 6 cut(s) 351, 550, 783, 2449, 2596, 3966
BpuEI CTTGAG 5 cut(s) 2032, 2208, 2264, 2894, 3222
BpuMI CCSGG 2 cut(s) 598, 2804
BsaBI GATNNNNATC 2 cut(s) 21, 1485
BsaHI GRCGYC 2 cut(s) 180, 909
BsaI GGTCTC 2 cut(s) 227, 3023
BsaWI WCCGGW 4 cut(s) 368, 2314, 3513, 4207
BsaXI ACNNNNNCTCC 4 cut(s) 258, 288, 4162, 4192
Bse118I RCCGGY 4 cut(s) 2314, 2440, 2542, 4207
Bse1I ACTGG 2 cut(s) 1580, 4181
Bse21I CCTNAGG 1 cut(s) 1797
Bse3DI GCAATG 6 cut(s) 629, 1047, 1134, 1221, 3981, 4378
Bse8I GATNNNNATC 2 cut(s) 21, 1485
BseAI TCCGGA 1 cut(s) 3513
BseBI CCWGG 4 cut(s) 2165, 3541, 3634, 4015
BseJI GATNNNNATC 2 cut(s) 21, 1485
BseMI GCAATG 6 cut(s) 629, 1047, 1134, 1221, 3981, 4378
BseNI ACTGG 2 cut(s) 1580, 4181
BseRI GAGGAG 4 cut(s) 368, 419, 440, 800
BseSI GKGCMC 2 cut(s) 1936, 2505
BsgI GTGCAG 1 cut(s) 369
Bsh1236I CGCG 1 cut(s) 27
BshTI ACCGGT 2 cut(s) 2314, 4207
BsiHKAI GWGCWC 3 cut(s) 1308, 1453, 2856
BsiSI CCGG 9 cut(s) 171, 369, 597, 2315, 2441, 2543, 2803, 3514, 4208
BslFI GGGAC 2 cut(s) 416, 4213
BsmAI GTCTC 5 cut(s) 227, 613, 1835, 3023, 4157
BsmFI GGGAC 2 cut(s) 416, 4213
Bso31I GGTCTC 2 cut(s) 227, 3023
Bsp13I TCCGGA 1 cut(s) 3513
Bsp1407I TGTACA 1 cut(s) 3334
Bsp19I CCATGG 2 cut(s) 2583, 3018
Bsp68I TCGCGA 1 cut(s) 27
BspEI TCCGGA 1 cut(s) 3513
BspFNI CGCG 1 cut(s) 27
BspHI TCATGA 4 cut(s) 640, 1453, 2062, 3025
BspLI GGNNCC 4 cut(s) 151, 432, 1131, 4229
BspMAI CTGCAG 3 cut(s) 3310, 3453, 3727
BspMI ACCTGC 1 cut(s) 3682
BspOI GCTAGC 1 cut(s) 2082
BspPI GGATC 6 cut(s) 368, 583, 588, 1525, 3186, 3204
BspTI CTTAAG 1 cut(s) 3112
BspTNI GGTCTC 2 cut(s) 227, 3023
BsrBI CCGCTC 1 cut(s) 3579
BsrDI GCAATG 6 cut(s) 629, 1047, 1134, 1221, 3981, 4378
BsrFI RCCGGY 4 cut(s) 2314, 2440, 2542, 4207
BsrGI TGTACA 1 cut(s) 3334
BsrI ACTGG 2 cut(s) 1580, 4181
BssAI RCCGGY 4 cut(s) 2314, 2440, 2542, 4207
BssNI GRCGYC 2 cut(s) 180, 909
BssSI CACGAG 1 cut(s) 1896
BssT1I CCWWGG 9 cut(s) 51, 132, 669, 2583, 3018, 3567, 4260, 4316, 4351
Bst2BI CACGAG 1 cut(s) 1896
Bst2UI CCWGG 4 cut(s) 2165, 3541, 3634, 4015
Bst4CI ACNGT 9 cut(s) 797, 1631, 1747, 2437, 2656, 3811, 4174, 4245, 4339
Bst6I CTCTTC 6 cut(s) 1452, 1668, 2880, 3870, 3888, 4041
BstACI GRCGYC 2 cut(s) 180, 909
BstAFI CTTAAG 1 cut(s) 3112
BstAPI GCANNNNNTGC 1 cut(s) 1748
BstAUI TGTACA 1 cut(s) 3334
BstC8I GCNNGC 8 cut(s) 521, 525, 2080, 2442, 2446, 2544, 2593, 2769
BstDSI CCRYGG 2 cut(s) 2583, 3018
BstFNI CGCG 1 cut(s) 27
BstH2I RGCGCY 2 cut(s) 549, 4241
BstHHI GCGC 3 cut(s) 548, 3226, 4240
BstMAI GTCTC 5 cut(s) 227, 613, 1835, 3023, 4157
BstNI CCWGG 4 cut(s) 2165, 3541, 3634, 4015
BstNSI RCATGY 2 cut(s) 2339, 2771
BstSCI CCNGG 6 cut(s) 596, 2163, 2802, 3539, 3632, 4013
BstSFI CTRYAG 5 cut(s) 3306, 3341, 3449, 3723, 4197
BstSLI GKGCMC 2 cut(s) 1936, 2505
BstUI CGCG 1 cut(s) 27
BstV2I GAAGAC 3 cut(s) 245, 3377, 3855
BstX2I RGATCY 3 cut(s) 575, 2217, 3178
BstYI RGATCY 3 cut(s) 575, 2217, 3178
Bsu36I CCTNAGG 1 cut(s) 1797
BtgI CCRYGG 2 cut(s) 2583, 3018
BtgZI GCGATG 3 cut(s) 8, 42, 159
BtsI GCAGTG 2 cut(s) 3660, 3732
BtsIMutI CAGTG 6 cut(s) 91, 1594, 2622, 2652, 3660, 3732
BtuMI TCGCGA 1 cut(s) 27
BveI ACCTGC 1 cut(s) 3682
Cac8I GCNNGC 8 cut(s) 521, 525, 2080, 2442, 2446, 2544, 2593, 2769
CaiI CAGNNNCTG 8 cut(s) 383, 776, 1844, 2348, 2456, 2495, 2642, 3815
CciI TCATGA 4 cut(s) 640, 1453, 2062, 3025
CfoI GCGC 3 cut(s) 548, 3226, 4240
Cfr10I RCCGGY 4 cut(s) 2314, 2440, 2542, 4207
Cfr13I GGNCC 7 cut(s) 430, 1592, 2838, 3145, 3587, 4006, 4227
CseI GACGC 4 cut(s) 188, 2071, 2075, 2522
Csp6I GTAC 5 cut(s) 558, 1715, 3335, 3391, 3546
CspAI ACCGGT 2 cut(s) 2314, 4207
CspCI CAANNNNNGTGG 2 cut(s) 226, 261
CviQI GTAC 5 cut(s) 558, 1715, 3335, 3391, 3546
DraI TTTAAA 1 cut(s) 4393
Eam1104I CTCTTC 6 cut(s) 1452, 1668, 2880, 3870, 3888, 4041
EarI CTCTTC 6 cut(s) 1452, 1668, 2880, 3870, 3888, 4041
EciI GGCGGA 1 cut(s) 23
Eco130I CCWWGG 9 cut(s) 51, 132, 669, 2583, 3018, 3567, 4260, 4316, 4351
Eco147I AGGCCT 1 cut(s) 2704
Eco24I GRGCYC 5 cut(s) 659, 1047, 1221, 1476, 2190
Eco31I GGTCTC 2 cut(s) 227, 3023
Eco32I GATATC 2 cut(s) 1111, 1285
Eco47I GGWCC 4 cut(s) 430, 3145, 3587, 4227
Eco81I CCTNAGG 1 cut(s) 1797
EcoO109I RGGNCCY 2 cut(s) 430, 4227
EcoRII CCWGG 4 cut(s) 2163, 3539, 3632, 4013
EcoRV GATATC 2 cut(s) 1111, 1285
EcoT14I CCWWGG 9 cut(s) 51, 132, 669, 2583, 3018, 3567, 4260, 4316, 4351
EcoT22I ATGCAT 1 cut(s) 631
EcoT38I GRGCYC 5 cut(s) 659, 1047, 1221, 1476, 2190
ErhI CCWWGG 9 cut(s) 51, 132, 669, 2583, 3018, 3567, 4260, 4316, 4351
FalI AAGNNNNNCTT 2 cut(s) 3198, 3230
FaqI GGGAC 2 cut(s) 416, 4213
FauI CCCGC 1 cut(s) 4065
FauNDI CATATG 2 cut(s) 3006, 3331
FbaI TGATCA 1 cut(s) 3094
FriOI GRGCYC 5 cut(s) 659, 1047, 1221, 1476, 2190
FspBI CTAG 4 cut(s) 2057, 2079, 2322, 2730
GlaI GCGC 3 cut(s) 547, 3225, 4239
GsuI CTGGAG 4 cut(s) 3406, 3968, 4131, 4164
HaeII RGCGCY 2 cut(s) 549, 4241
HapII CCGG 9 cut(s) 171, 369, 597, 2315, 2441, 2543, 2803, 3514, 4208
HgaI GACGC 4 cut(s) 188, 2071, 2075, 2522
HhaI GCGC 3 cut(s) 548, 3226, 4240
Hin1I GRCGYC 2 cut(s) 180, 909
Hin6I GCGC 3 cut(s) 546, 3224, 4238
HinP1I GCGC 3 cut(s) 546, 3224, 4238
HincII GTYRAC 3 cut(s) 360, 453, 2247
HindII GTYRAC 3 cut(s) 360, 453, 2247
HindIII AAGCTT 1 cut(s) 1735
HpaII CCGG 9 cut(s) 171, 369, 597, 2315, 2441, 2543, 2803, 3514, 4208
HphI GGTGA 6 cut(s) 157, 383, 848, 2425, 2572, 4222
Hpy166II GTNNAC 7 cut(s) 360, 453, 806, 1901, 2247, 3548, 4248
Hpy8I GTNNAC 7 cut(s) 360, 453, 806, 1901, 2247, 3548, 4248
Hpy99I CGWCG 3 cut(s) 143, 2087, 2925
HpyCH4III ACNGT 9 cut(s) 797, 1631, 1747, 2437, 2656, 3811, 4174, 4245, 4339
HpyCH4IV ACGT 2 cut(s) 909, 3940
HpySE526I ACGT 2 cut(s) 909, 3940
Hsp92I GRCGYC 2 cut(s) 180, 909
HspAI GCGC 3 cut(s) 546, 3224, 4238
Kpn2I TCCGGA 1 cut(s) 3513
KroI GCCGGC 2 cut(s) 2440, 2542
KroNI GCCGGC 2 cut(s) 2442, 2544
Ksp22I TGATCA 1 cut(s) 3094
LmnI GCTCC 7 cut(s) 155, 346, 1303, 2851, 3442, 3739, 4150
MaeI CTAG 4 cut(s) 2057, 2079, 2322, 2730
MaeII ACGT 2 cut(s) 909, 3940
MbiI CCGCTC 1 cut(s) 3579
MfeI CAATTG 4 cut(s) 880, 1764, 2565, 3690
MflI RGATCY 3 cut(s) 575, 2217, 3178
MlsI TGGCCA 8 cut(s) 729, 999, 1086, 1173, 1260, 1347, 3884, 4346
MluNI TGGCCA 8 cut(s) 729, 999, 1086, 1173, 1260, 1347, 3884, 4346
MlyI GAGTC 9 cut(s) 365, 452, 503, 674, 1250, 1442, 2501, 2618, 2648
MmeI TCCRAC 3 cut(s) 240, 456, 1551
Mox20I TGGCCA 8 cut(s) 729, 999, 1086, 1173, 1260, 1347, 3884, 4346
Mph1103I ATGCAT 1 cut(s) 631
MroI TCCGGA 1 cut(s) 3513
MroNI GCCGGC 2 cut(s) 2440, 2542
MscI TGGCCA 8 cut(s) 729, 999, 1086, 1173, 1260, 1347, 3884, 4346
MslI CAYNNNNRTG 1 cut(s) 27
Msp20I TGGCCA 8 cut(s) 729, 999, 1086, 1173, 1260, 1347, 3884, 4346
MspA1I CMGCKG 5 cut(s) 563, 698, 2258, 3079, 3920
MspCI CTTAAG 1 cut(s) 3112
MspI CCGG 9 cut(s) 171, 369, 597, 2315, 2441, 2543, 2803, 3514, 4208
MspR9I CCNGG 6 cut(s) 598, 2165, 2804, 3541, 3634, 4015
MunI CAATTG 4 cut(s) 880, 1764, 2565, 3690
MvaI CCWGG 4 cut(s) 2165, 3541, 3634, 4015
MvnI CGCG 1 cut(s) 27
NaeI GCCGGC 2 cut(s) 2442, 2544
NciI CCSGG 2 cut(s) 598, 2804
NcoI CCATGG 2 cut(s) 2583, 3018
NdeI CATATG 2 cut(s) 3006, 3331
NgoMIV GCCGGC 2 cut(s) 2440, 2542
NheI GCTAGC 1 cut(s) 2078
NlaIV GGNNCC 4 cut(s) 151, 432, 1131, 4229
NmeAIII GCCGAG 1 cut(s) 448
NmuCI GTSAC 8 cut(s) 163, 176, 673, 2431, 2578, 3065, 3232, 4210
NruI TCGCGA 1 cut(s) 27
NsiI ATGCAT 1 cut(s) 631
NspI RCATGY 2 cut(s) 2339, 2771
PaeI GCATGC 1 cut(s) 2771
PagI TCATGA 4 cut(s) 640, 1453, 2062, 3025
PceI AGGCCT 1 cut(s) 2704
PdiI GCCGGC 2 cut(s) 2442, 2544
PflMI CCANNNNNTGG 9 cut(s) 736, 823, 871, 919, 1006, 1093, 1180, 1267, 1354
PinAI ACCGGT 2 cut(s) 2314, 4207
PleI GAGTC 9 cut(s) 364, 451, 502, 673, 1249, 1441, 2500, 2617, 2647
PpsI GAGTC 9 cut(s) 364, 451, 502, 673, 1249, 1441, 2500, 2617, 2647
PpuMI RGGWCCY 2 cut(s) 430, 4227
PshBI ATTAAT 5 cut(s) 975, 1062, 1323, 2556, 4128
Psp5II RGGWCCY 2 cut(s) 430, 4227
Psp6I CCWGG 4 cut(s) 2163, 3539, 3632, 4013
PspGI CCWGG 4 cut(s) 2163, 3539, 3632, 4013
PspN4I GGNNCC 4 cut(s) 151, 432, 1131, 4229
PspPI GGNCC 7 cut(s) 430, 1592, 2838, 3145, 3587, 4006, 4227
PspPPI RGGWCCY 2 cut(s) 430, 4227
PstI CTGCAG 3 cut(s) 3310, 3453, 3727
PstNI CAGNNNCTG 8 cut(s) 383, 776, 1844, 2348, 2456, 2495, 2642, 3815
PsuI RGATCY 3 cut(s) 575, 2217, 3178
PvuII CAGCTG 5 cut(s) 563, 698, 2258, 3079, 3920
RruI TCGCGA 1 cut(s) 27
RsaI GTAC 5 cut(s) 559, 1716, 3336, 3392, 3547
RsaNI GTAC 5 cut(s) 558, 1715, 3335, 3391, 3546
RseI CAYNNNNRTG 1 cut(s) 27
Sau96I GGNCC 7 cut(s) 430, 1592, 2838, 3145, 3587, 4006, 4227
SchI GAGTC 9 cut(s) 365, 452, 503, 674, 1250, 1442, 2501, 2618, 2648
ScrFI CCNGG 6 cut(s) 598, 2165, 2804, 3541, 3634, 4015
SfcI CTRYAG 5 cut(s) 3306, 3341, 3449, 3723, 4197
SinI GGWCC 4 cut(s) 430, 3145, 3587, 4227
SmiMI CAYNNNNRTG 1 cut(s) 27
SmlI CTYRAG 7 cut(s) 2047, 2223, 2279, 2909, 3112, 3237, 4403
SmoI CTYRAG 7 cut(s) 2047, 2223, 2279, 2909, 3112, 3237, 4403
SphI GCATGC 1 cut(s) 2771
SseBI AGGCCT 1 cut(s) 2704
SspI AATATT 2 cut(s) 1092, 1266
SspMI CTAG 4 cut(s) 2057, 2079, 2322, 2730
StuI AGGCCT 1 cut(s) 2704
StyD4I CCNGG 6 cut(s) 596, 2163, 2802, 3539, 3632, 4013
StyI CCWWGG 9 cut(s) 51, 132, 669, 2583, 3018, 3567, 4260, 4316, 4351
TaaI ACNGT 9 cut(s) 797, 1631, 1747, 2437, 2656, 3811, 4174, 4245, 4339
TaiI ACGT 2 cut(s) 912, 3943
TaqI TCGA 1 cut(s) 4185
TatI WGTACW 3 cut(s) 557, 3334, 3545
TauI GCSGC 5 cut(s) 185, 188, 2591, 3579, 4380
TscAI CASTG 6 cut(s) 91, 1594, 2629, 2659, 3660, 3732
TseFI GTSAC 8 cut(s) 163, 176, 673, 2431, 2578, 3065, 3232, 4210
Tsp45I GTSAC 8 cut(s) 163, 176, 673, 2431, 2578, 3065, 3232, 4210
TspGWI ACGGA 1 cut(s) 1530
TspRI CASTG 6 cut(s) 91, 1594, 2629, 2659, 3660, 3732
Van91I CCANNNNNTGG 9 cut(s) 736, 823, 871, 919, 1006, 1093, 1180, 1267, 1354
Vha464I CTTAAG 1 cut(s) 3112
VpaK11BI GGWCC 4 cut(s) 430, 3145, 3587, 4227
VspI ATTAAT 5 cut(s) 975, 1062, 1323, 2556, 4128
XapI RAATTY 4 cut(s) 486, 1960, 1993, 2864
XceI RCATGY 2 cut(s) 2339, 2771
XcmI CCANNNNNNNNNTGG 1 cut(s) 3640
XspI CTAG 4 cut(s) 2057, 2079, 2322, 2730
ZraI GACGTC 1 cut(s) 910
Zsp2I ATGCAT 1 cut(s) 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.