Rmu_sc0002117.1_g000006

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002117.1
OG0000444
Physical Location & Seq
Reverse (-)
43830 .. 45889
2060 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002117.1_g000006.1.cds

Sequence Viewer

Length: 705 bp
atggatgggttctttacttgtgttgaggtattctttcccgatgacattcaaactcaaaatttggtgacaaatgtagaattgcacaagtatttgaagaaagagggtggatttggaagagctttggctaagatccatacaaagaaaaggaatagactagatacagcaaggttgaacaatttagtctatgtccaattcaatgccaagatcatcaacaagaagagaagaatgaaagataagaatgtggatgtactacttgctagtgaagctactatagcacaaggatggattgttgatggtggtgatgaagatgttgatgaaagagtaaagcccaccatggaagagaagaaagcaacaccaaacgagctcagaatcgccgccagctccgcttcacgaccactgatgtccaatttttgggcatcgatagcaattgctggtgttgcatgccacttttgttttgtttttccccttccagattggtatatatacccccctccctccaatctccaatctccggcaaattcaacttccattttcaattcaagagccataaaggaaatgaaaatgaagacccaaatgctaactgtggatggtggcgcctccaccaatcatcctcaatcggtttctagatgtttgtcagttgctgggtggccgccggtgatgatggctagccagtctagtcggtcggtcgagagaggtgagcagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

234

Amino Acids

26.14

Weight (kDa)

9.16

Isoelectric Point (pI)

46.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22220 AT3G22220 AT3G22220 AT3G22220 AT4G15020 AT4G15020
fragaria_vesca FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_7g22891 FvH4_7g22891 FvH4_7g22891
malus_domestica MD01G1137200.v1.1 MD02G1265900.v1.1 MD07G1202100.v1.1 MD09G1137900.v1.1 MD09G1138100.v1.1 MD17G1128400.v1.1
prunus_persica Prupe.2G058600_v2.0.a1 Prupe.2G058600_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1
pyrus_communis pycom01g15800 pycom01g15810 pycom01g15840 pycom02g22730 pycom07g18920 pycom07g18930 pycom09g05900 pycom17g12060
rosa_chinensis RchiOBHm_Chr1g0368051 RchiOBHm_Chr2g0153631 RchiOBHm_Chr2g0153641 RchiOBHm_Chr7g0237231
rosa_laevigata RLG00000001022 RLG00000020718
rosa_multiflora Rmu_sc0002117.1_g000006 Rmu_sc0004952.1_g000008 Rmu_sc0005823.1_g000001 Rmu_sc0013273.1_g000001 Rmu_sc0028071.1_g000001
rosa_roxburghii Rroxscaffold_1G00016080 Rroxscaffold_2G00094830 Rroxscaffold_4G00288900
rosa_rugosa Rorug01G0338600 Rorug01G0338700 Rorug02G0441100 Rorug02G0441200 Rorug04G0167900 Rorug07G0273200 Rorug07G0273300 Rorug07G0297100 Rorug07G0297200 Rorug07G0297300
rosa_samantha Rh1AG102500 Rh1AG102600 Rh1AG102700 Rh1AG345600 Rh1BG307900 Rh1CG323500 Rh1DG340000 Rh2AG504100 Rh2BG514800 Rh2CG490100 Rh2DG526900 Rh7AG451500 Rh7AG451700 Rh7AG459100 Rh7AG459200 Rh7BG400700 Rh7BG400800 Rh7BG421300 Rh7BG421400 Rh7BG423400 Rh7BG423500 Rh7BG423800 Rh7BG423900 Rh7CG471000 Rh7CG471100 Rh7CG471200
rosa_wichuraiana Rw1G030760 Rw2G041430 Rw5G036050 Rw7G038020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 593
AccB7I CCANNNNNTGG 1 cut(s) 411
AciI CCGC 3 cut(s) 375, 384, 650
AclWI GGATC 1 cut(s) 124
AcoI YGGCCR 1 cut(s) 647
AcsI RAATTY 2 cut(s) 58, 517
AcyI GRCGYC 1 cut(s) 594
AfaI GTAC 1 cut(s) 249
AfiI CCNNNNNNNGG 2 cut(s) 411, 511
AgsI TTSAA 7 cut(s) 50, 94, 172, 196, 522, 535, 540
AluBI AGCT 4 cut(s) 119, 266, 364, 381
AluI AGCT 4 cut(s) 119, 266, 364, 381
Alw21I GWGCWC 1 cut(s) 366
AlwI GGATC 1 cut(s) 124
AlwNI CAGNNNCTG 1 cut(s) 641
AoxI GGCC 1 cut(s) 647
ApoI RAATTY 2 cut(s) 58, 517
AspLEI GCGC 1 cut(s) 596
AsuHPI GGTGA 3 cut(s) 76, 311, 667
AsuNHI GCTAGC 1 cut(s) 665
BanI GGYRCC 1 cut(s) 593
BanII GRGCYC 1 cut(s) 366
BbsI GAAGAC 1 cut(s) 572
Bbv12I GWGCWC 1 cut(s) 366
BccI CCATC 4 cut(s) 276, 287, 581, 655
BfaI CTAG 5 cut(s) 155, 258, 624, 666, 675
BfmI CTRYAG 1 cut(s) 270
BfoI RGCGCY 1 cut(s) 597
BisI GCNGC 2 cut(s) 375, 650
BlsI GCNGC 2 cut(s) 376, 651
BmiI GGNNCC 1 cut(s) 595
BmsI GCATC 1 cut(s) 425
BmtI GCTAGC 1 cut(s) 669
BpiI GAAGAC 1 cut(s) 572
Bsa29I ATCGAT 1 cut(s) 419
BsaHI GRCGYC 1 cut(s) 594
BsaJI CCNNGG 1 cut(s) 333
Bsc4I CCNNNNNNNGG 2 cut(s) 411, 511
Bse118I RCCGGY 1 cut(s) 652
Bse1I ACTGG 1 cut(s) 670
BseCI ATCGAT 1 cut(s) 419
BseDI CCNNGG 1 cut(s) 333
BseGI GGATG 5 cut(s) 10, 250, 287, 592, 607
BseLI CCNNNNNNNGG 2 cut(s) 411, 511
BseMII CTCAG 1 cut(s) 379
BseNI ACTGG 1 cut(s) 670
BseYI CCCAGC 1 cut(s) 641
Bsh1285I CGRYCG 2 cut(s) 683, 687
BshFI GGCC 1 cut(s) 649
BshNI GGYRCC 1 cut(s) 593
BshVI ATCGAT 1 cut(s) 419
BsiEI CGRYCG 2 cut(s) 683, 687
BsiHKAI GWGCWC 1 cut(s) 366
BsiSI CCGG 2 cut(s) 512, 653
BslI CCNNNNNNNGG 2 cut(s) 411, 511
BsnI GGCC 1 cut(s) 649
Bsp1286I GDGCHC 1 cut(s) 366
Bsp143I GATC 2 cut(s) 129, 204
Bsp19I CCATGG 1 cut(s) 333
BspACI CCGC 3 cut(s) 375, 384, 650
BspANI GGCC 1 cut(s) 649
BspCNI CTCAG 1 cut(s) 378
BspDI ATCGAT 1 cut(s) 419
BspLI GGNNCC 1 cut(s) 595
BspOI GCTAGC 1 cut(s) 669
BspPI GGATC 1 cut(s) 124
BspQI GCTCTTC 1 cut(s) 109
BspT107I GGYRCC 1 cut(s) 593
BsrFI RCCGGY 1 cut(s) 652
BsrI ACTGG 1 cut(s) 670
BssAI RCCGGY 1 cut(s) 652
BssECI CCNNGG 1 cut(s) 333
BssMI GATC 2 cut(s) 129, 204
BssNI GRCGYC 1 cut(s) 594
BssT1I CCWWGG 1 cut(s) 333
Bst4CI ACNGT 1 cut(s) 583
Bst6I CTCTTC 3 cut(s) 109, 212, 333
BstACI GRCGYC 1 cut(s) 594
BstC8I GCNNGC 3 cut(s) 379, 442, 667
BstDEI CTNAG 2 cut(s) 126, 365
BstDSI CCRYGG 1 cut(s) 333
BstF5I GGATG 5 cut(s) 10, 250, 287, 592, 607
BstH2I RGCGCY 1 cut(s) 597
BstHHI GCGC 1 cut(s) 596
BstKTI GATC 2 cut(s) 132, 207
BstMBI GATC 2 cut(s) 129, 204
BstMCI CGRYCG 2 cut(s) 683, 687
BstMWI GCNNNNNNNGC 5 cut(s) 263, 272, 383, 422, 437
BstNSI RCATGY 1 cut(s) 444
BstSFI CTRYAG 1 cut(s) 270
BstV2I GAAGAC 1 cut(s) 572
BstX2I RGATCY 1 cut(s) 129
BstYI RGATCY 1 cut(s) 129
Bsu15I ATCGAT 1 cut(s) 419
BsuRI GGCC 1 cut(s) 649
BsuTUI ATCGAT 1 cut(s) 419
BtgI CCRYGG 1 cut(s) 333
BtsCI GGATG 5 cut(s) 10, 250, 287, 592, 607
BtsIMutI CAGTG 1 cut(s) 395
Cac8I GCNNGC 3 cut(s) 379, 442, 667
CaiI CAGNNNCTG 1 cut(s) 641
CfoI GCGC 1 cut(s) 596
Cfr10I RCCGGY 1 cut(s) 652
ClaI ATCGAT 1 cut(s) 419
Csp6I GTAC 1 cut(s) 248
CviAII CATG 2 cut(s) 334, 441
CviQI GTAC 1 cut(s) 248
DdeI CTNAG 2 cut(s) 126, 365
DinI GGCGCC 1 cut(s) 595
DpnI GATC 2 cut(s) 131, 206
DpnII GATC 2 cut(s) 129, 204
EaeI YGGCCR 1 cut(s) 647
Eam1104I CTCTTC 3 cut(s) 109, 212, 333
EarI CTCTTC 3 cut(s) 109, 212, 333
Ecl136II GAGCTC 1 cut(s) 364
Eco130I CCWWGG 1 cut(s) 333
Eco24I GRGCYC 1 cut(s) 366
Eco53kI GAGCTC 1 cut(s) 364
EcoICRI GAGCTC 1 cut(s) 364
EcoT14I CCWWGG 1 cut(s) 333
EcoT38I GRGCYC 1 cut(s) 366
EgeI GGCGCC 1 cut(s) 595
EheI GGCGCC 1 cut(s) 595
ErhI CCWWGG 1 cut(s) 333
FaeI CATG 2 cut(s) 337, 444
FaiI YATR 9 cut(s) 135, 186, 272, 335, 442, 480, 482, 484, 548
FatI CATG 2 cut(s) 333, 440
Fnu4HI GCNGC 2 cut(s) 375, 650
FokI GGATG 5 cut(s) 17, 257, 294, 594, 599
FriOI GRGCYC 1 cut(s) 366
Fsp4HI GCNGC 2 cut(s) 375, 650
FspBI CTAG 5 cut(s) 155, 258, 624, 666, 675
GlaI GCGC 1 cut(s) 595
GluI GCNGC 2 cut(s) 375, 650
GsaI CCCAGC 1 cut(s) 645
HaeII RGCGCY 1 cut(s) 597
HaeIII GGCC 1 cut(s) 649
HapII CCGG 2 cut(s) 512, 653
HhaI GCGC 1 cut(s) 596
Hin1I GRCGYC 1 cut(s) 594
Hin1II CATG 2 cut(s) 337, 444
Hin6I GCGC 1 cut(s) 594
HinP1I GCGC 1 cut(s) 594
HinfI GANTC 1 cut(s) 369
HpaII CCGG 2 cut(s) 512, 653
HphI GGTGA 3 cut(s) 76, 311, 667
Hpy188I TCNGA 1 cut(s) 368
Hpy188III TCNNGA 6 cut(s) 38, 390, 470, 540, 624, 688
HpyAV CCTTC 1 cut(s) 476
HpyCH4III ACNGT 1 cut(s) 583
HpyCH4V TGCA 2 cut(s) 82, 440
HpyF10VI GCNNNNNNNGC 5 cut(s) 263, 272, 383, 422, 437
HpyF3I CTNAG 2 cut(s) 126, 365
Hsp92I GRCGYC 1 cut(s) 594
Hsp92II CATG 2 cut(s) 337, 444
HspAI GCGC 1 cut(s) 594
KasI GGCGCC 1 cut(s) 593
Kzo9I GATC 2 cut(s) 129, 204
LguI GCTCTTC 1 cut(s) 109
LmnI GCTCC 1 cut(s) 386
LpnPI CCDG 7 cut(s) 391, 417, 483, 525, 627, 666, 683
LweI GCATC 1 cut(s) 425
MaeI CTAG 5 cut(s) 155, 258, 624, 666, 675
MaeIII GTNAC 1 cut(s) 64
MalI GATC 2 cut(s) 131, 206
MboI GATC 2 cut(s) 129, 204
MboII GAAGA 8 cut(s) 106, 126, 229, 234, 317, 350, 355, 577
MfeI CAATTG 1 cut(s) 426
MflI RGATCY 1 cut(s) 129
MhlI GDGCHC 1 cut(s) 366
MluCI AATT 8 cut(s) 58, 77, 175, 191, 406, 426, 517, 535
Mly113I GGCGCC 1 cut(s) 594
MnlI CCTC 7 cut(s) 19, 94, 501, 505, 607, 621, 686
MslI CAYNNNNRTG 1 cut(s) 280
MspI CCGG 2 cut(s) 512, 653
MunI CAATTG 1 cut(s) 426
MwoI GCNNNNNNNGC 5 cut(s) 263, 272, 383, 422, 437
NarI GGCGCC 1 cut(s) 594
NcoI CCATGG 1 cut(s) 333
NdeII GATC 2 cut(s) 129, 204
NheI GCTAGC 1 cut(s) 665
NlaIII CATG 2 cut(s) 337, 444
NlaIV GGNNCC 1 cut(s) 595
NmuCI GTSAC 1 cut(s) 64
NspI RCATGY 1 cut(s) 444
PaeI GCATGC 1 cut(s) 444
PciSI GCTCTTC 1 cut(s) 109
PfeI GAWTC 1 cut(s) 369
PflMI CCANNNNNTGG 1 cut(s) 411
PkrI GCNGC 2 cut(s) 376, 651
PluTI GGCGCC 1 cut(s) 597
Psp124BI GAGCTC 1 cut(s) 366
PspFI CCCAGC 1 cut(s) 641
PspN4I GGNNCC 1 cut(s) 595
PstNI CAGNNNCTG 1 cut(s) 641
PsuI RGATCY 1 cut(s) 129
RsaI GTAC 1 cut(s) 249
RsaNI GTAC 1 cut(s) 248
RseI CAYNNNNRTG 1 cut(s) 280
SacI GAGCTC 1 cut(s) 366
SapI GCTCTTC 1 cut(s) 109
SatI GCNGC 2 cut(s) 375, 650
Sau3AI GATC 2 cut(s) 129, 204
SduI GDGCHC 1 cut(s) 366
SetI ASST 7 cut(s) 30, 121, 170, 268, 366, 383, 697
SfaNI GCATC 1 cut(s) 425
SfcI CTRYAG 1 cut(s) 270
SfoI GGCGCC 1 cut(s) 595
SgrAI CRCCGGYG 1 cut(s) 652
SmiMI CAYNNNNRTG 1 cut(s) 280
SphI GCATGC 1 cut(s) 444
Sse9I AATT 8 cut(s) 58, 77, 175, 191, 406, 426, 517, 535
SsiI CCGC 3 cut(s) 375, 384, 650
SspDI GGCGCC 1 cut(s) 593
SspMI CTAG 5 cut(s) 155, 258, 624, 666, 675
SstI GAGCTC 1 cut(s) 366
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 1 cut(s) 583
TaqI TCGA 2 cut(s) 419, 687
TaqII GACCGA 2 cut(s) 669, 673
TasI AATT 8 cut(s) 58, 77, 175, 191, 406, 426, 517, 535
TatI WGTACW 1 cut(s) 247
TauI GCSGC 2 cut(s) 377, 652
TfiI GAWTC 1 cut(s) 369
TscAI CASTG 1 cut(s) 402
TseFI GTSAC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 5 cut(s) 242, 318, 330, 572, 578
TspRI CASTG 1 cut(s) 402
Van91I CCANNNNNTGG 1 cut(s) 411
XapI RAATTY 2 cut(s) 58, 517
XbaI TCTAGA 1 cut(s) 623
XceI RCATGY 1 cut(s) 444
XspI CTAG 5 cut(s) 155, 258, 624, 666, 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.