RchiOBHm_Chr2g0153631

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000444
Physical Location & Seq
Reverse (-)
70973779 .. 70974423
645 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52270

Sequence Viewer

Length: 426 bp
ATGGCACGTTTTGCAGTTCATATTCTCAGTCAAACTTGCAGCTTAATTCAGTGCAAGGAGAATCAGATTCCTTTTGACCAACTGCACGAGACAAGGAACAGCTTAGAGCATCAACGGCTTAGTGATTTTGTCTTTGTTCAGTACAACATGCAACTAAGACAGATGGTTCATAAGAACAAAGAGCATGAGTATGTGGATCCTATATCATTTGACAACACTAGCACTGTTGAAGACTGGATAACAGAGACTGAAATGTACCTAGAAGACCATGAAAATACTGATTGGAAGGCACTTGAACCGCCCTCTTATAATTCAAGGCTTTTAGAACTTTCAGTTGATGAAGCTGAAGACTTGGGTTCAGGGTTTGATGATAACGAGATTTTCTTAAACGGATTGCAATTGGTTAAAGAAGAAGGCAGAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

141

Amino Acids

16.6

Weight (kDa)

4.49

Isoelectric Point (pI)

39.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22220 AT3G22220 AT3G22220 AT3G22220 AT4G15020 AT4G15020
fragaria_vesca FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_7g22891 FvH4_7g22891 FvH4_7g22891
malus_domestica MD01G1137200.v1.1 MD02G1265900.v1.1 MD07G1202100.v1.1 MD09G1137900.v1.1 MD09G1138100.v1.1 MD17G1128400.v1.1
prunus_persica Prupe.2G058600_v2.0.a1 Prupe.2G058600_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1
pyrus_communis pycom01g15800 pycom01g15810 pycom01g15840 pycom02g22730 pycom07g18920 pycom07g18930 pycom09g05900 pycom17g12060
rosa_chinensis RchiOBHm_Chr1g0368051 RchiOBHm_Chr2g0153631 RchiOBHm_Chr2g0153641 RchiOBHm_Chr7g0237231
rosa_laevigata RLG00000001022 RLG00000020718
rosa_multiflora Rmu_sc0002117.1_g000006 Rmu_sc0004952.1_g000008 Rmu_sc0005823.1_g000001 Rmu_sc0013273.1_g000001 Rmu_sc0028071.1_g000001
rosa_roxburghii Rroxscaffold_1G00016080 Rroxscaffold_2G00094830 Rroxscaffold_4G00288900
rosa_rugosa Rorug01G0338600 Rorug01G0338700 Rorug02G0441100 Rorug02G0441200 Rorug04G0167900 Rorug07G0273200 Rorug07G0273300 Rorug07G0297100 Rorug07G0297200 Rorug07G0297300
rosa_samantha Rh1AG102500 Rh1AG102600 Rh1AG102700 Rh1AG345600 Rh1BG307900 Rh1CG323500 Rh1DG340000 Rh2AG504100 Rh2BG514800 Rh2CG490100 Rh2DG526900 Rh7AG451500 Rh7AG451700 Rh7AG459100 Rh7AG459200 Rh7BG400700 Rh7BG400800 Rh7BG421300 Rh7BG421400 Rh7BG423400 Rh7BG423500 Rh7BG423800 Rh7BG423900 Rh7CG471000 Rh7CG471100 Rh7CG471200
rosa_wichuraiana Rw1G030760 Rw2G041430 Rw5G036050 Rw7G038020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 309
AciI CCGC 1 cut(s) 299
AclWI GGATC 2 cut(s) 191, 204
AcuI CTGAAG 1 cut(s) 366
AfaI GTAC 2 cut(s) 143, 257
AgsI TTSAA 3 cut(s) 230, 296, 315
AluBI AGCT 3 cut(s) 42, 102, 344
AluI AGCT 3 cut(s) 42, 102, 344
Alw26I GTCTC 2 cut(s) 83, 239
AlwI GGATC 2 cut(s) 191, 204
AlwNI CAGNNNCTG 1 cut(s) 248
ApeKI GCWGC 1 cut(s) 39
BamHI GGATCC 1 cut(s) 196
BauI CACGAG 1 cut(s) 86
BbsI GAAGAC 3 cut(s) 237, 270, 354
BbvI GCAGC 1 cut(s) 51
BccI CCATC 1 cut(s) 157
BceAI ACGGC 1 cut(s) 131
BcoDI GTCTC 2 cut(s) 83, 239
BfaI CTAG 2 cut(s) 219, 260
BisI GCNGC 1 cut(s) 40
BlsI GCNGC 1 cut(s) 41
BmiI GGNNCC 1 cut(s) 198
BmsI GCATC 1 cut(s) 118
BpiI GAAGAC 3 cut(s) 237, 270, 354
Bse1I ACTGG 1 cut(s) 239
BseMII CTCAG 1 cut(s) 40
BseNI ACTGG 1 cut(s) 239
BseXI GCAGC 1 cut(s) 51
BsgI GTGCAG 1 cut(s) 68
BsmAI GTCTC 2 cut(s) 83, 239
Bsp143I GATC 1 cut(s) 196
BspACI CCGC 1 cut(s) 299
BspCNI CTCAG 1 cut(s) 39
BspLI GGNNCC 1 cut(s) 198
BspPI GGATC 2 cut(s) 191, 204
BsrI ACTGG 1 cut(s) 239
BssMI GATC 1 cut(s) 196
BssSI CACGAG 1 cut(s) 86
Bst2BI CACGAG 1 cut(s) 86
Bst4CI ACNGT 1 cut(s) 226
BstAPI GCANNNNNTGC 1 cut(s) 11
BstDEI CTNAG 4 cut(s) 26, 103, 119, 155
BstKTI GATC 1 cut(s) 199
BstMAI GTCTC 2 cut(s) 83, 239
BstMBI GATC 1 cut(s) 196
BstMWI GCNNNNNNNGC 2 cut(s) 11, 115
BstNSI RCATGY 1 cut(s) 151
BstV1I GCAGC 1 cut(s) 51
BstV2I GAAGAC 3 cut(s) 237, 270, 354
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BtsIMutI CAGTG 2 cut(s) 56, 222
CaiI CAGNNNCTG 1 cut(s) 248
Csp6I GTAC 2 cut(s) 142, 256
CviAII CATG 3 cut(s) 148, 185, 269
CviJI RGCY 5 cut(s) 42, 102, 118, 319, 344
CviKI_1 RGCY 5 cut(s) 42, 102, 118, 319, 344
CviQI GTAC 2 cut(s) 142, 256
DdeI CTNAG 4 cut(s) 26, 103, 119, 155
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
Eco57I CTGAAG 1 cut(s) 366
FaeI CATG 3 cut(s) 151, 188, 272
FaiI YATR 8 cut(s) 21, 149, 171, 186, 192, 203, 270, 309
FatI CATG 3 cut(s) 147, 184, 268
Fnu4HI GCNGC 1 cut(s) 40
Fsp4HI GCNGC 1 cut(s) 40
FspBI CTAG 2 cut(s) 219, 260
GluI GCNGC 1 cut(s) 40
Hin1II CATG 3 cut(s) 151, 188, 272
HinfI GANTC 2 cut(s) 61, 67
Hpy188I TCNGA 1 cut(s) 66
HpyAV CCTTC 2 cut(s) 280, 407
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4IV ACGT 1 cut(s) 7
HpyCH4V TGCA 6 cut(s) 14, 39, 54, 85, 151, 397
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 115
HpyF3I CTNAG 4 cut(s) 26, 103, 119, 155
HpySE526I ACGT 1 cut(s) 7
Hsp92II CATG 3 cut(s) 151, 188, 272
Kzo9I GATC 1 cut(s) 196
LpnPI CCDG 2 cut(s) 220, 345
Lsp1109I GCAGC 1 cut(s) 51
LweI GCATC 1 cut(s) 118
MaeI CTAG 2 cut(s) 219, 260
MaeII ACGT 1 cut(s) 7
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 4 cut(s) 242, 275, 359, 422
MfeI CAATTG 1 cut(s) 398
MflI RGATCY 1 cut(s) 196
MluCI AATT 3 cut(s) 45, 310, 398
MnlI CCTC 1 cut(s) 313
MseI TTAA 4 cut(s) 44, 386, 405, 424
MslI CAYNNNNRTG 1 cut(s) 189
MunI CAATTG 1 cut(s) 398
MwoI GCNNNNNNNGC 2 cut(s) 11, 115
NdeII GATC 1 cut(s) 196
NlaIII CATG 3 cut(s) 151, 188, 272
NlaIV GGNNCC 1 cut(s) 198
NspI RCATGY 1 cut(s) 151
PfeI GAWTC 2 cut(s) 61, 67
PkrI GCNGC 1 cut(s) 41
PsiI TTATAA 1 cut(s) 309
PspN4I GGNNCC 1 cut(s) 198
PstNI CAGNNNCTG 1 cut(s) 248
PsuI RGATCY 1 cut(s) 196
RsaI GTAC 2 cut(s) 143, 257
RsaNI GTAC 2 cut(s) 142, 256
RseI CAYNNNNRTG 1 cut(s) 189
SaqAI TTAA 4 cut(s) 44, 386, 405, 424
SatI GCNGC 1 cut(s) 40
Sau3AI GATC 1 cut(s) 196
SetI ASST 5 cut(s) 10, 44, 104, 261, 346
SfaNI GCATC 1 cut(s) 118
SmiMI CAYNNNNRTG 1 cut(s) 189
Sse9I AATT 3 cut(s) 45, 310, 398
SsiI CCGC 1 cut(s) 299
SspMI CTAG 2 cut(s) 219, 260
TaaI ACNGT 1 cut(s) 226
TaiI ACGT 1 cut(s) 10
TasI AATT 3 cut(s) 45, 310, 398
TatI WGTACW 1 cut(s) 141
TfiI GAWTC 2 cut(s) 61, 67
Tru1I TTAA 4 cut(s) 44, 386, 405, 424
Tru9I TTAA 4 cut(s) 44, 386, 405, 424
TscAI CASTG 2 cut(s) 56, 229
TseI GCWGC 1 cut(s) 39
TspDTI ATGAA 4 cut(s) 8, 158, 285, 354
TspGWI ACGGA 1 cut(s) 405
TspRI CASTG 2 cut(s) 56, 229
XceI RCATGY 1 cut(s) 151
XspI CTAG 2 cut(s) 219, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.