Rmu_sc0004952.1_g000008

Protein of unknown function (DUF 659)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004952.1
Physical Location & Seq
Reverse (-)
27946 .. 29223
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004952.1_g000008.1.cds

Sequence Viewer

Length: 1074 bp
atgggtgcgaacccgagtcgttgttttagtgaactagacaatgtgtttactgaaaatgaagttggagggcccaatttgatgaaccaagaggaagatgtgggaatgagtgttgataatgggattagggttggtgctaggcacagaaagggtcaaatgggtgcgaacccgagtcgttgttttagtgaactagacaatgtgtttactgaaaatgaagttagagggcccaatttgatgaaccaagaggaagatgtgggaatgagtgttgataatgggattagggttggtgataatctgactgatgtgcctcttgagattgatgattgttttaggagtgatggtctagagggattgactattgtgcctcttgcagtagttgactcgtataagggtaatgctctagggagaaaagttggaaaaccgaatttcagttttttggaaaatcgagaggagggtgttgatagacgagtagggtggaggggtggaacttcttttgtagctactactgctggtttgggttctggttctggttctgctaatgctactaaactgagttatgtcccagctcctattcgtagtgaggtcgacaggccattttacgaaaacacacaaggaagatcagttggtcatcccaattcagatttgtttgaaaatgaagcagaagttggcgcaagtaatacaaacgggaaaaacaggaagagggtaagagataaaaatggatcaatggctgccaatgctggcactgttggcagtaatggtgaagttgaaaaggcgaacagccagcagattcatatggcaataggacggtttctatatgaaattcaggctcctctggatgccgtgaagaactctgtttattttcagccaatgatcaatgcaattgcttctgggggaatggagagtaaaccaccctcgtatcatgatcttcgggatgctttgtatgagattcttaagcaagtgttggaagaagttggagttgggcatgttttgcaagtaattacaaatagtgaggagcactatgttgtttctgggaagaggttgatggatacattccctacgctgtactggtctccctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

357

Amino Acids

38.82

Weight (kDa)

4.99

Isoelectric Point (pI)

33.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22220 AT3G22220 AT3G22220 AT3G22220 AT4G15020 AT4G15020
fragaria_vesca FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_7g22891 FvH4_7g22891 FvH4_7g22891
malus_domestica MD01G1137200.v1.1 MD02G1265900.v1.1 MD07G1202100.v1.1 MD09G1137900.v1.1 MD09G1138100.v1.1 MD17G1128400.v1.1
prunus_persica Prupe.2G058600_v2.0.a1 Prupe.2G058600_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1
pyrus_communis pycom01g15800 pycom01g15810 pycom01g15840 pycom02g22730 pycom07g18920 pycom07g18930 pycom09g05900 pycom17g12060
rosa_chinensis RchiOBHm_Chr1g0368051 RchiOBHm_Chr2g0153631 RchiOBHm_Chr2g0153641 RchiOBHm_Chr7g0237231
rosa_laevigata RLG00000001022 RLG00000020718
rosa_multiflora Rmu_sc0002117.1_g000006 Rmu_sc0004952.1_g000008 Rmu_sc0005823.1_g000001 Rmu_sc0013273.1_g000001 Rmu_sc0028071.1_g000001
rosa_roxburghii Rroxscaffold_1G00016080 Rroxscaffold_2G00094830 Rroxscaffold_4G00288900
rosa_rugosa Rorug01G0338600 Rorug01G0338700 Rorug02G0441100 Rorug02G0441200 Rorug04G0167900 Rorug07G0273200 Rorug07G0273300 Rorug07G0297100 Rorug07G0297200 Rorug07G0297300
rosa_samantha Rh1AG102500 Rh1AG102600 Rh1AG102700 Rh1AG345600 Rh1BG307900 Rh1CG323500 Rh1DG340000 Rh2AG504100 Rh2BG514800 Rh2CG490100 Rh2DG526900 Rh7AG451500 Rh7AG451700 Rh7AG459100 Rh7AG459200 Rh7BG400700 Rh7BG400800 Rh7BG421300 Rh7BG421400 Rh7BG423400 Rh7BG423500 Rh7BG423800 Rh7BG423900 Rh7CG471000 Rh7CG471100 Rh7CG471200
rosa_wichuraiana Rw1G030760 Rw2G041430 Rw5G036050 Rw7G038020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 582
AclWI GGATC 1 cut(s) 724
AcsI RAATTY 2 cut(s) 421, 816
AfaI GTAC 1 cut(s) 1061
AflII CTTAAG 1 cut(s) 947
AgsI TTSAA 2 cut(s) 647, 764
AjuI GAANNNNNNNTTGG 6 cut(s) 45, 77, 645, 677, 957, 989
AluBI AGCT 2 cut(s) 497, 563
AluI AGCT 2 cut(s) 497, 563
Alw21I GWGCWC 1 cut(s) 1014
AlwI GGATC 1 cut(s) 724
Ama87I CYCGRG 2 cut(s) 13, 166
AoxI GGCC 3 cut(s) 68, 221, 587
ApaI GGGCCC 2 cut(s) 72, 225
ApeKI GCWGC 1 cut(s) 725
ApoI RAATTY 2 cut(s) 421, 816
AspLEI GCGC 1 cut(s) 668
AspS9I GGNCC 4 cut(s) 68, 69, 221, 222
AsuHPI GGTGA 2 cut(s) 296, 767
AvaI CYCGRG 2 cut(s) 13, 166
BaeGI GKGCMC 2 cut(s) 72, 225
BaeI ACNNNNGTAYC 2 cut(s) 896, 929
BanII GRGCYC 2 cut(s) 72, 225
Bbv12I GWGCWC 1 cut(s) 1014
BbvI GCAGC 1 cut(s) 712
BccI CCATC 2 cut(s) 329, 1033
BceAI ACGGC 1 cut(s) 821
BciVI GTATCC 1 cut(s) 1036
BclI TGATCA 1 cut(s) 867
BfaI CTAG 5 cut(s) 35, 135, 188, 341, 398
BfrI CTTAAG 1 cut(s) 947
BfuI GTATCC 1 cut(s) 1036
BisI GCNGC 1 cut(s) 726
BlsI GCNGC 1 cut(s) 727
BmeT110I CYCGRG 2 cut(s) 13, 166
BmgT120I GGNCC 4 cut(s) 68, 69, 221, 222
BmiI GGNNCC 3 cut(s) 70, 223, 825
BmsI GCATC 2 cut(s) 823, 919
BpuEI CTTGAG 1 cut(s) 329
BsaXI ACNNNNNCTCC 2 cut(s) 322, 352
Bse1I ACTGG 1 cut(s) 1067
BseGI GGATG 3 cut(s) 625, 838, 934
BseMII CTCAG 1 cut(s) 539
BseNI ACTGG 1 cut(s) 1067
BseRI GAGGAG 3 cut(s) 461, 816, 1022
BseSI GKGCMC 2 cut(s) 72, 225
BseXI GCAGC 1 cut(s) 712
BseYI CCCAGC 1 cut(s) 559
BshFI GGCC 3 cut(s) 70, 223, 589
BsiHKAI GWGCWC 1 cut(s) 1014
BsiHKCI CYCGRG 2 cut(s) 13, 166
BslFI GGGAC 1 cut(s) 542
BsmFI GGGAC 1 cut(s) 542
BsnI GGCC 3 cut(s) 70, 223, 589
BsoBI CYCGRG 2 cut(s) 13, 166
Bsp120I GGGCCC 2 cut(s) 68, 221
Bsp1286I GDGCHC 3 cut(s) 72, 225, 1014
Bsp143I GATC 4 cut(s) 614, 716, 867, 919
BspANI GGCC 3 cut(s) 70, 223, 589
BspCNI CTCAG 1 cut(s) 540
BspHI TCATGA 1 cut(s) 916
BspLI GGNNCC 3 cut(s) 70, 223, 825
BspPI GGATC 1 cut(s) 724
BspTI CTTAAG 1 cut(s) 947
BsrI ACTGG 1 cut(s) 1067
BssMI GATC 4 cut(s) 614, 716, 867, 919
Bst4CI ACNGT 2 cut(s) 742, 804
Bst6I CTCTTC 2 cut(s) 689, 1025
BstAFI CTTAAG 1 cut(s) 947
BstAPI GCANNNNNTGC 1 cut(s) 985
BstC8I GCNNGC 2 cut(s) 736, 779
BstDEI CTNAG 1 cut(s) 548
BstF5I GGATG 3 cut(s) 625, 838, 934
BstHHI GCGC 1 cut(s) 668
BstKTI GATC 4 cut(s) 617, 719, 870, 922
BstMBI GATC 4 cut(s) 614, 716, 867, 919
BstMWI GCNNNNNNNGC 4 cut(s) 503, 731, 744, 985
BstNSI RCATGY 1 cut(s) 983
BstSLI GKGCMC 2 cut(s) 72, 225
BstV1I GCAGC 1 cut(s) 712
BsuI GTATCC 1 cut(s) 1036
BsuRI GGCC 3 cut(s) 70, 223, 589
BtsCI GGATG 3 cut(s) 625, 838, 934
BtsIMutI CAGTG 1 cut(s) 738
Cac8I GCNNGC 2 cut(s) 736, 779
CciI TCATGA 1 cut(s) 916
CfoI GCGC 1 cut(s) 668
Cfr13I GGNCC 4 cut(s) 68, 69, 221, 222
Csp6I GTAC 1 cut(s) 1060
CviAII CATG 2 cut(s) 917, 980
CviJI RGCY 9 cut(s) 70, 223, 497, 563, 589, 725, 777, 824, 862
CviKI_1 RGCY 9 cut(s) 70, 223, 497, 563, 589, 725, 777, 824, 862
CviQI GTAC 1 cut(s) 1060
DdeI CTNAG 1 cut(s) 548
DpnI GATC 4 cut(s) 616, 718, 869, 921
DpnII GATC 4 cut(s) 614, 716, 867, 919
Eam1104I CTCTTC 2 cut(s) 689, 1025
EarI CTCTTC 2 cut(s) 689, 1025
Eco24I GRGCYC 2 cut(s) 72, 225
Eco88I CYCGRG 2 cut(s) 13, 166
EcoO109I RGGNCCY 2 cut(s) 68, 221
EcoT38I GRGCYC 2 cut(s) 72, 225
FaeI CATG 2 cut(s) 920, 983
FaqI GGGAC 1 cut(s) 542
FatI CATG 2 cut(s) 916, 979
FauNDI CATATG 1 cut(s) 789
FbaI TGATCA 1 cut(s) 867
FblI GTMKAC 1 cut(s) 582
Fnu4HI GCNGC 1 cut(s) 726
FokI GGATG 3 cut(s) 612, 845, 941
FriOI GRGCYC 2 cut(s) 72, 225
Fsp4HI GCNGC 1 cut(s) 726
FspBI CTAG 5 cut(s) 35, 135, 188, 341, 398
GlaI GCGC 1 cut(s) 667
GluI GCNGC 1 cut(s) 726
GsaI CCCAGC 1 cut(s) 563
HaeIII GGCC 3 cut(s) 70, 223, 589
HhaI GCGC 1 cut(s) 668
Hin1II CATG 2 cut(s) 920, 983
Hin6I GCGC 1 cut(s) 666
HinP1I GCGC 1 cut(s) 666
HincII GTYRAC 2 cut(s) 376, 583
HindII GTYRAC 2 cut(s) 376, 583
HinfI GANTC 5 cut(s) 16, 169, 377, 784, 943
HphI GGTGA 2 cut(s) 296, 767
Hpy166II GTNNAC 7 cut(s) 32, 48, 185, 201, 376, 583, 902
Hpy188I TCNGA 2 cut(s) 294, 637
Hpy188III TCNNGA 6 cut(s) 308, 341, 443, 830, 917, 926
Hpy8I GTNNAC 7 cut(s) 32, 48, 185, 201, 376, 583, 902
HpyCH4III ACNGT 2 cut(s) 742, 804
HpyCH4V TGCA 3 cut(s) 368, 875, 988
HpyF10VI GCNNNNNNNGC 4 cut(s) 503, 731, 744, 985
HpyF3I CTNAG 1 cut(s) 548
Hsp92II CATG 2 cut(s) 920, 983
HspAI GCGC 1 cut(s) 666
Ksp22I TGATCA 1 cut(s) 867
Kzo9I GATC 4 cut(s) 614, 716, 867, 919
LmnI GCTCC 3 cut(s) 568, 829, 1009
Lsp1109I GCAGC 1 cut(s) 712
LweI GCATC 2 cut(s) 823, 919
MaeI CTAG 5 cut(s) 35, 135, 188, 341, 398
MalI GATC 4 cut(s) 616, 718, 869, 921
MboI GATC 4 cut(s) 614, 716, 867, 919
MboII GAAGA 8 cut(s) 104, 257, 624, 706, 853, 914, 974, 1042
MfeI CAATTG 1 cut(s) 876
MhlI GDGCHC 3 cut(s) 72, 225, 1014
MluCI AATT 7 cut(s) 73, 226, 421, 631, 816, 876, 993
MlyI GAGTC 3 cut(s) 25, 178, 371
MmeI TCCRAC 4 cut(s) 43, 391, 939, 949
MseI TTAA 1 cut(s) 948
MspCI CTTAAG 1 cut(s) 947
MunI CAATTG 1 cut(s) 876
MwoI GCNNNNNNNGC 4 cut(s) 503, 731, 744, 985
NdeI CATATG 1 cut(s) 789
NdeII GATC 4 cut(s) 614, 716, 867, 919
NlaIII CATG 2 cut(s) 920, 983
NlaIV GGNNCC 3 cut(s) 70, 223, 825
NspI RCATGY 1 cut(s) 983
PagI TCATGA 1 cut(s) 916
PfeI GAWTC 2 cut(s) 784, 943
PkrI GCNGC 1 cut(s) 727
PleI GAGTC 3 cut(s) 24, 177, 371
PpsI GAGTC 3 cut(s) 24, 177, 371
PspFI CCCAGC 1 cut(s) 559
PspN4I GGNNCC 3 cut(s) 70, 223, 825
PspOMI GGGCCC 2 cut(s) 68, 221
PspPI GGNCC 4 cut(s) 68, 69, 221, 222
RsaI GTAC 1 cut(s) 1061
RsaNI GTAC 1 cut(s) 1060
SalI GTCGAC 1 cut(s) 581
SaqAI TTAA 1 cut(s) 948
SatI GCNGC 1 cut(s) 726
Sau3AI GATC 4 cut(s) 614, 716, 867, 919
Sau96I GGNCC 4 cut(s) 68, 69, 221, 222
SchI GAGTC 3 cut(s) 25, 178, 371
SduI GDGCHC 3 cut(s) 72, 225, 1014
SetI ASST 4 cut(s) 499, 565, 582, 1037
SfaNI GCATC 2 cut(s) 823, 919
SmlI CTYRAG 2 cut(s) 308, 947
SmoI CTYRAG 2 cut(s) 308, 947
Sse9I AATT 7 cut(s) 73, 226, 421, 631, 816, 876, 993
SspMI CTAG 5 cut(s) 35, 135, 188, 341, 398
TaaI ACNGT 2 cut(s) 742, 804
TaqI TCGA 2 cut(s) 442, 582
TasI AATT 7 cut(s) 73, 226, 421, 631, 816, 876, 993
TatI WGTACW 1 cut(s) 1059
TfiI GAWTC 2 cut(s) 784, 943
Tru1I TTAA 1 cut(s) 948
Tru9I TTAA 1 cut(s) 948
TscAI CASTG 1 cut(s) 745
TseI GCWGC 1 cut(s) 725
TspDTI ATGAA 7 cut(s) 72, 95, 225, 248, 666, 776, 828
TspRI CASTG 1 cut(s) 745
Vha464I CTTAAG 1 cut(s) 947
XapI RAATTY 2 cut(s) 421, 816
XbaI TCTAGA 1 cut(s) 340
XceI RCATGY 1 cut(s) 983
XmiI GTMKAC 1 cut(s) 582
XspI CTAG 5 cut(s) 35, 135, 188, 341, 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.