Rh7CG471000

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000444
Physical Location & Seq
Forward (+)
63169968 .. 63170747
780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG471000.1

Sequence Viewer

Length: 780 bp
ATGACATCTTTGGAGGGTTTTGACCCCATAGCTATTTCCCCACAGAAACAAGACCCAGGATGGAAACACTGTCAAATCTACATTAAAACTGGGGACCCAAAAGTTGAGTTAAACAAGTGTTTATATTGTGGCAAAGTGTTTCAGGGTGGAGGGATTAATAGGTTTAAATTTCACCTTGCTGGTAGAAAAGGAAATGGTCCCATTTGTGATCAGGTCCCTCCTGATGTTCGAGTTTCCATGTTGCAGTGCTTAGATGAAAAAATTGCATCTTTTAGGCACAGAAAGAGTCAAATGGGTGCGAGCCCGAATCGTAGTTTTAGTGACCTAGACAATGTGTTTGCTGAAAATGAGGTTGGAGAGCCCAATTTGATGAATCAAGAGGAAGATGTGGGAATGAGTGTTGATAATGGGATTAGGGTTGGTGATAATCTGACTGATGTGCCTCTTGAGATTGCTGATTGTTTTAGGAGTGATGTTCTAGAGGGATTGACTACTGTGCCTCTTGCAGTAGTTGACTCGTATAAGGGTAATGCTGTAGGGAGAAAAGTTGGAGTACCGAATTTCAGTTTTTTGGAAAATCGAGAGGAGGGTGTTGATAGACGAGTAGGGTGGAGGGGTGGAACTTCTTTTGTAGCTACTACTGCTGGTTTGGGTTCTGGTTCTGCTATTGCTACTAAACTGAGTTATGTCCCAGCTCCTATTCGTAGTGAGGTAGACAATCCATTTTACAAAAAACACGCAAGGAAGATCAGTTGGTCATCGCAATTCAGATTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

259

Amino Acids

28.47

Weight (kDa)

7.6

Isoelectric Point (pI)

34.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22220 AT3G22220 AT3G22220 AT3G22220 AT4G15020 AT4G15020
fragaria_vesca FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_7g22891 FvH4_7g22891 FvH4_7g22891
malus_domestica MD01G1137200.v1.1 MD02G1265900.v1.1 MD07G1202100.v1.1 MD09G1137900.v1.1 MD09G1138100.v1.1 MD17G1128400.v1.1
prunus_persica Prupe.2G058600_v2.0.a1 Prupe.2G058600_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1
pyrus_communis pycom01g15800 pycom01g15810 pycom01g15840 pycom02g22730 pycom07g18920 pycom07g18930 pycom09g05900 pycom17g12060
rosa_chinensis RchiOBHm_Chr1g0368051 RchiOBHm_Chr2g0153631 RchiOBHm_Chr2g0153641 RchiOBHm_Chr7g0237231
rosa_laevigata RLG00000001022 RLG00000020718
rosa_multiflora Rmu_sc0002117.1_g000006 Rmu_sc0004952.1_g000008 Rmu_sc0005823.1_g000001 Rmu_sc0013273.1_g000001 Rmu_sc0028071.1_g000001
rosa_roxburghii Rroxscaffold_1G00016080 Rroxscaffold_2G00094830 Rroxscaffold_4G00288900
rosa_rugosa Rorug01G0338600 Rorug01G0338700 Rorug02G0441100 Rorug02G0441200 Rorug04G0167900 Rorug07G0273200 Rorug07G0273300 Rorug07G0297100 Rorug07G0297200 Rorug07G0297300
rosa_samantha Rh1AG102500 Rh1AG102600 Rh1AG102700 Rh1AG345600 Rh1BG307900 Rh1CG323500 Rh1DG340000 Rh2AG504100 Rh2BG514800 Rh2CG490100 Rh2DG526900 Rh7AG451500 Rh7AG451700 Rh7AG459100 Rh7AG459200 Rh7BG400700 Rh7BG400800 Rh7BG421300 Rh7BG421400 Rh7BG423400 Rh7BG423500 Rh7BG423800 Rh7BG423900 Rh7CG471000 Rh7CG471100 Rh7CG471200
rosa_wichuraiana Rw1G030760 Rw2G041430 Rw5G036050 Rw7G038020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 714
AcsI RAATTY 2 cut(s) 167, 559
AfaI GTAC 1 cut(s) 555
AjnI CCWGG 1 cut(s) 55
AjuI GAANNNNNNNTTGG 2 cut(s) 336, 368
AluBI AGCT 3 cut(s) 32, 635, 695
AluI AGCT 3 cut(s) 32, 635, 695
ApoI RAATTY 2 cut(s) 167, 559
ArsI GACNNNNNNTTYG 2 cut(s) 320, 352
AseI ATTAAT 1 cut(s) 156
AspS9I GGNCC 3 cut(s) 94, 197, 214
AsuHPI GGTGA 2 cut(s) 164, 434
AvaII GGWCC 3 cut(s) 94, 197, 214
BanII GRGCYC 2 cut(s) 305, 363
BccI CCATC 1 cut(s) 54
BciT130I CCWGG 1 cut(s) 57
BclI TGATCA 1 cut(s) 208
BfaI CTAG 2 cut(s) 326, 479
BfmI CTRYAG 1 cut(s) 534
Bme1390I CCNGG 1 cut(s) 57
Bme18I GGWCC 3 cut(s) 94, 197, 214
BmgT120I GGNCC 3 cut(s) 94, 197, 214
BmiI GGNNCC 4 cut(s) 95, 96, 199, 216
BmrFI CCNGG 1 cut(s) 57
BmrI ACTGGG 1 cut(s) 99
BmsI GCATC 1 cut(s) 275
BmuI ACTGGG 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 467
BsaJI CCNNGG 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 94
BseBI CCWGG 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 55
BseGI GGATG 1 cut(s) 65
BseMII CTCAG 1 cut(s) 671
BseNI ACTGG 1 cut(s) 94
BseRI GAGGAG 1 cut(s) 599
BseYI CCCAGC 1 cut(s) 691
BslFI GGGAC 4 cut(s) 107, 183, 200, 674
BsmFI GGGAC 4 cut(s) 107, 183, 200, 674
Bsp1286I GDGCHC 2 cut(s) 305, 363
Bsp143I GATC 2 cut(s) 208, 747
BspCNI CTCAG 1 cut(s) 672
BspLI GGNNCC 4 cut(s) 95, 96, 199, 216
BsrI ACTGG 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 2 cut(s) 208, 747
Bst2UI CCWGG 1 cut(s) 57
Bst4CI ACNGT 2 cut(s) 71, 496
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 2 cut(s) 250, 680
BstF5I GGATG 1 cut(s) 65
BstKTI GATC 2 cut(s) 211, 750
BstMBI GATC 2 cut(s) 208, 747
BstMWI GCNNNNNNNGC 1 cut(s) 641
BstNI CCWGG 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 55
BstSFI CTRYAG 1 cut(s) 534
BtgZI GCGATG 1 cut(s) 744
BtsCI GGATG 1 cut(s) 65
BtsI GCAGTG 1 cut(s) 251
BtsIMutI CAGTG 2 cut(s) 67, 251
Cac8I GCNNGC 1 cut(s) 301
Cfr13I GGNCC 3 cut(s) 94, 197, 214
Csp6I GTAC 1 cut(s) 554
CviAII CATG 1 cut(s) 238
CviJI RGCY 5 cut(s) 32, 303, 361, 635, 695
CviKI_1 RGCY 5 cut(s) 32, 303, 361, 635, 695
CviQI GTAC 1 cut(s) 554
DdeI CTNAG 2 cut(s) 250, 680
DpnI GATC 2 cut(s) 210, 749
DpnII GATC 2 cut(s) 208, 747
DraI TTTAAA 1 cut(s) 166
Eco24I GRGCYC 2 cut(s) 305, 363
Eco47I GGWCC 3 cut(s) 94, 197, 214
EcoO109I RGGNCCY 2 cut(s) 94, 214
EcoRII CCWGG 1 cut(s) 55
EcoT38I GRGCYC 2 cut(s) 305, 363
FaeI CATG 1 cut(s) 241
FaiI YATR 5 cut(s) 29, 124, 239, 522, 687
FaqI GGGAC 4 cut(s) 107, 183, 200, 674
FatI CATG 1 cut(s) 237
FbaI TGATCA 1 cut(s) 208
FblI GTMKAC 1 cut(s) 714
FokI GGATG 1 cut(s) 72
FriOI GRGCYC 2 cut(s) 305, 363
FspBI CTAG 2 cut(s) 326, 479
GsaI CCCAGC 1 cut(s) 695
Hin1II CATG 1 cut(s) 241
HincII GTYRAC 1 cut(s) 514
HindII GTYRAC 1 cut(s) 514
HinfI GANTC 4 cut(s) 286, 307, 373, 515
HphI GGTGA 2 cut(s) 164, 434
Hpy166II GTNNAC 2 cut(s) 514, 715
Hpy188I TCNGA 2 cut(s) 432, 770
Hpy188III TCNNGA 5 cut(s) 221, 377, 446, 479, 581
Hpy8I GTNNAC 2 cut(s) 514, 715
HpyCH4III ACNGT 2 cut(s) 71, 496
HpyCH4V TGCA 3 cut(s) 244, 266, 506
HpyF10VI GCNNNNNNNGC 1 cut(s) 641
HpyF3I CTNAG 2 cut(s) 250, 680
Hsp92II CATG 1 cut(s) 241
KflI GGGWCCC 1 cut(s) 94
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 2 cut(s) 208, 747
LmnI GCTCC 1 cut(s) 700
LweI GCATC 1 cut(s) 275
MaeI CTAG 2 cut(s) 326, 479
MaeIII GTNAC 1 cut(s) 320
MalI GATC 2 cut(s) 210, 749
MboI GATC 2 cut(s) 208, 747
MboII GAAGA 2 cut(s) 395, 757
MhlI GDGCHC 2 cut(s) 305, 363
MluCI AATT 5 cut(s) 167, 261, 364, 559, 764
MlyI GAGTC 2 cut(s) 295, 509
MmeI TCCRAC 2 cut(s) 334, 529
MseI TTAA 4 cut(s) 84, 110, 156, 165
MspR9I CCNGG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 57
MwoI GCNNNNNNNGC 1 cut(s) 641
NdeII GATC 2 cut(s) 208, 747
NlaIII CATG 1 cut(s) 241
NlaIV GGNNCC 4 cut(s) 95, 96, 199, 216
NmuCI GTSAC 1 cut(s) 320
PfeI GAWTC 2 cut(s) 307, 373
PleI GAGTC 2 cut(s) 294, 509
PpsI GAGTC 2 cut(s) 294, 509
PpuMI RGGWCCY 2 cut(s) 94, 214
PshBI ATTAAT 1 cut(s) 156
Psp5II RGGWCCY 2 cut(s) 94, 214
Psp6I CCWGG 1 cut(s) 55
PspFI CCCAGC 1 cut(s) 691
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 4 cut(s) 95, 96, 199, 216
PspPI GGNCC 3 cut(s) 94, 197, 214
PspPPI RGGWCCY 2 cut(s) 94, 214
RsaI GTAC 1 cut(s) 555
RsaNI GTAC 1 cut(s) 554
SaqAI TTAA 4 cut(s) 84, 110, 156, 165
Sau3AI GATC 2 cut(s) 208, 747
Sau96I GGNCC 3 cut(s) 94, 197, 214
SchI GAGTC 2 cut(s) 295, 509
ScrFI CCNGG 1 cut(s) 57
SduI GDGCHC 2 cut(s) 305, 363
SetI ASST 9 cut(s) 34, 164, 177, 216, 327, 354, 637, 697, 714
SfaNI GCATC 1 cut(s) 275
SfcI CTRYAG 1 cut(s) 534
SinI GGWCC 3 cut(s) 94, 197, 214
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
Sse9I AATT 5 cut(s) 167, 261, 364, 559, 764
SspMI CTAG 2 cut(s) 326, 479
StyD4I CCNGG 1 cut(s) 55
TaaI ACNGT 2 cut(s) 71, 496
TaqI TCGA 2 cut(s) 229, 580
TasI AATT 5 cut(s) 167, 261, 364, 559, 764
TfiI GAWTC 2 cut(s) 307, 373
Tru1I TTAA 4 cut(s) 84, 110, 156, 165
Tru9I TTAA 4 cut(s) 84, 110, 156, 165
TscAI CASTG 2 cut(s) 74, 251
TseFI GTSAC 1 cut(s) 320
Tsp45I GTSAC 1 cut(s) 320
TspDTI ATGAA 2 cut(s) 270, 386
TspRI CASTG 2 cut(s) 74, 251
VpaK11BI GGWCC 3 cut(s) 94, 197, 214
VspI ATTAAT 1 cut(s) 156
XapI RAATTY 2 cut(s) 167, 559
XbaI TCTAGA 1 cut(s) 478
XmiI GTMKAC 1 cut(s) 714
XspI CTAG 2 cut(s) 326, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.