Rorug07G0297300

Protein of unknown function (DUF 659)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
29312605 .. 29314697
2093 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0297300.1

Sequence Viewer

Length: 1047 bp
ATGGAGGGGCATCTTCTTTCTACTCTGTCCTCAAATAGTGCCAACTTTTGTAGCATAAATATTCGTCTTCTGTTTTGCAATTTGCACCACCAAATTAACAAAACAAGTCCATCATCGATAACCAGAGTGGGGGAGAGAGAAGAAAGAAAAGAAAACACCACTATGATGATGAGCAACAACAACAAACCCACCTTGAAGAAGACAAGAACCTTTTCCCCCAAGAAATCAGATTCAATGCAAATCCCCACCGCTCATCATCAACCCATGGAATTTGTCCCTAAAAGGTGTGCTTCGCTAAAGTTTCCTGCCTCTCCTCAACTTGTTTTGGGGGAGGAGATGCTCCATTTCAGTCACCCACAACATCCTCTTTCCCATGTGAACTTACCGGACCTCTTCACCTGCGCCGGCTGTAAAGAGTACGGCGCAGGCAAGAGGTTCACTTGTCAACGATGTGATTATCAACTTCATGATTTTTGTGCCTTGGCTCCTCCAGTTCTAAAGAGTCATCCCTTCCATTGCCAACACCAACTGGCTTTCTATTCTAAACCAGTAAAAGGAGGGATTGCACAATCGAAGTGTGATGTTTGTAGCAAGCCCATCAAAGGCTATGCTTTCAGATGCGGCGCAGGTTGTTTCCAGATGCATCCTTGCTGCGCCATGCTATCTTCGGAAATCAGCTTGCCATATCTCCATCCCCATACCCTAAGACTTTTACCTGCATCAAAAAGTGGCAGCGATCCGAGTTTTGTGTGTGGTGAGTGCAGGAGGAAGAGGTCGGGCACCAGAGTGTACCATTGCACCGTCTGTGACTACCATCTTCATGCGGTATGTGCAAAGAATATGATCAATGGACTTCAGGAAAATGGCATCAAGAACCTAGAAAAGCCCAGCATGTTGGGGACTGCAGCTCGCCTGGCATCTCAAGTGGTCATCGAGTTCCTTGGGGGGTTGATGGAGGGGCTTGGGGAAGGTGTTGCAGAAGTCTTTGTCCAAAATGTCACCAGATCAGGAAGAGGCAATGGTAGAGGAAGAAGTCCTACTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

348

Amino Acids

38.46

Weight (kDa)

9.19

Isoelectric Point (pI)

44.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 116 - 160 1.2e-07 C1 domain
C1_2 PF03107 230 - 278 1.4e-09 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22220 AT3G22220 AT3G22220 AT3G22220 AT4G15020 AT4G15020
fragaria_vesca FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_7g22891 FvH4_7g22891 FvH4_7g22891
malus_domestica MD01G1137200.v1.1 MD02G1265900.v1.1 MD07G1202100.v1.1 MD09G1137900.v1.1 MD09G1138100.v1.1 MD17G1128400.v1.1
prunus_persica Prupe.2G058600_v2.0.a1 Prupe.2G058600_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1
pyrus_communis pycom01g15800 pycom01g15810 pycom01g15840 pycom02g22730 pycom07g18920 pycom07g18930 pycom09g05900 pycom17g12060
rosa_chinensis RchiOBHm_Chr1g0368051 RchiOBHm_Chr2g0153631 RchiOBHm_Chr2g0153641 RchiOBHm_Chr7g0237231
rosa_laevigata RLG00000001022 RLG00000020718
rosa_multiflora Rmu_sc0002117.1_g000006 Rmu_sc0004952.1_g000008 Rmu_sc0005823.1_g000001 Rmu_sc0013273.1_g000001 Rmu_sc0028071.1_g000001
rosa_roxburghii Rroxscaffold_1G00016080 Rroxscaffold_2G00094830 Rroxscaffold_4G00288900
rosa_rugosa Rorug01G0338600 Rorug01G0338700 Rorug02G0441100 Rorug02G0441200 Rorug04G0167900 Rorug07G0273200 Rorug07G0273300 Rorug07G0297100 Rorug07G0297200 Rorug07G0297300
rosa_samantha Rh1AG102500 Rh1AG102600 Rh1AG102700 Rh1AG345600 Rh1BG307900 Rh1CG323500 Rh1DG340000 Rh2AG504100 Rh2BG514800 Rh2CG490100 Rh2DG526900 Rh7AG451500 Rh7AG451700 Rh7AG459100 Rh7AG459200 Rh7BG400700 Rh7BG400800 Rh7BG421300 Rh7BG421400 Rh7BG423400 Rh7BG423500 Rh7BG423800 Rh7BG423900 Rh7CG471000 Rh7CG471100 Rh7CG471200
rosa_wichuraiana Rw1G030760 Rw2G041430 Rw5G036050 Rw7G038020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 407
Acc36I ACCTGC 3 cut(s) 407, 617, 724
AccB1I GGYRCC 1 cut(s) 779
AccBSI CCGCTC 1 cut(s) 251
AciI CCGC 3 cut(s) 249, 621, 824
AclWI GGATC 1 cut(s) 731
AcsI RAATTY 1 cut(s) 269
AcuI CTGAAG 1 cut(s) 839
AfaI GTAC 2 cut(s) 419, 791
AfiI CCNNNNNNNGG 3 cut(s) 129, 554, 602
AgsI TTSAA 2 cut(s) 196, 234
AjnI CCWGG 1 cut(s) 912
AleI CACNNNNGTG 1 cut(s) 785
AluBI AGCT 2 cut(s) 678, 908
AluI AGCT 2 cut(s) 678, 908
AlwI GGATC 1 cut(s) 731
ApeKI GCWGC 3 cut(s) 651, 732, 905
ApoI RAATTY 1 cut(s) 269
Asp700I GAANNNNTTC 1 cut(s) 211
AspLEI GCGC 4 cut(s) 404, 425, 626, 656
AspS9I GGNCC 1 cut(s) 388
AsuHPI GGTGA 4 cut(s) 344, 388, 767, 991
AvaII GGWCC 1 cut(s) 388
BaeGI GKGCMC 1 cut(s) 782
BanI GGYRCC 1 cut(s) 779
BarI GAAGNNNNNNTAC 1 cut(s) 1021
BbsI GAAGAC 2 cut(s) 59, 206
BbvI GCAGC 3 cut(s) 638, 744, 917
BccI CCATC 5 cut(s) 118, 605, 699, 822, 946
BceAI ACGGC 1 cut(s) 436
BciT130I CCWGG 1 cut(s) 914
BclI TGATCA 1 cut(s) 843
BfaI CTAG 1 cut(s) 878
BfmI CTRYAG 1 cut(s) 903
BfuAI ACCTGC 3 cut(s) 407, 617, 724
BisI GCNGC 4 cut(s) 622, 652, 733, 906
BlsI GCNGC 4 cut(s) 623, 653, 734, 907
Bme1390I CCNGG 1 cut(s) 914
Bme18I GGWCC 1 cut(s) 388
BmgT120I GGNCC 1 cut(s) 388
BmiI GGNNCC 2 cut(s) 486, 781
BmrFI CCNGG 1 cut(s) 914
BmsI GCATC 8 cut(s) 19, 327, 608, 630, 652, 728, 876, 926
BpiI GAAGAC 2 cut(s) 59, 206
BpmI CTGGAG 1 cut(s) 474
BpuEI CTTGAG 1 cut(s) 906
Bsa29I ATCGAT 1 cut(s) 116
BsaJI CCNNGG 3 cut(s) 264, 480, 940
BsaWI WCCGGW 1 cut(s) 385
Bsc4I CCNNNNNNNGG 3 cut(s) 129, 554, 602
Bse118I RCCGGY 1 cut(s) 404
Bse1I ACTGG 3 cut(s) 491, 534, 548
Bse3DI GCAATG 3 cut(s) 514, 793, 1024
BseBI CCWGG 1 cut(s) 914
BseCI ATCGAT 1 cut(s) 116
BseDI CCNNGG 3 cut(s) 264, 480, 940
BseGI GGATG 4 cut(s) 361, 505, 643, 691
BseLI CCNNNNNNNGG 3 cut(s) 129, 554, 602
BseMI GCAATG 3 cut(s) 514, 793, 1024
BseNI ACTGG 3 cut(s) 491, 534, 548
BseRI GAGGAG 3 cut(s) 303, 347, 477
BseSI GKGCMC 1 cut(s) 782
BseXI GCAGC 3 cut(s) 638, 744, 917
BseYI CCCAGC 1 cut(s) 887
BsgI GTGCAG 1 cut(s) 781
BshNI GGYRCC 1 cut(s) 779
BshVI ATCGAT 1 cut(s) 116
BsiSI CCGG 2 cut(s) 386, 405
BslFI GGGAC 2 cut(s) 260, 913
BslI CCNNNNNNNGG 3 cut(s) 129, 554, 602
BsmFI GGGAC 2 cut(s) 260, 913
Bsp1286I GDGCHC 1 cut(s) 782
Bsp143I GATC 3 cut(s) 736, 843, 1004
Bsp19I CCATGG 1 cut(s) 264
BspACI CCGC 3 cut(s) 249, 621, 824
BspDI ATCGAT 1 cut(s) 116
BspHI TCATGA 1 cut(s) 466
BspLI GGNNCC 2 cut(s) 486, 781
BspMAI CTGCAG 1 cut(s) 907
BspMI ACCTGC 3 cut(s) 407, 617, 724
BspPI GGATC 1 cut(s) 731
BspT107I GGYRCC 1 cut(s) 779
BsrBI CCGCTC 1 cut(s) 251
BsrDI GCAATG 3 cut(s) 514, 793, 1024
BsrFI RCCGGY 1 cut(s) 404
BsrI ACTGG 3 cut(s) 491, 534, 548
BssAI RCCGGY 1 cut(s) 404
BssECI CCNNGG 3 cut(s) 264, 480, 940
BssMI GATC 3 cut(s) 736, 843, 1004
BssT1I CCWWGG 3 cut(s) 264, 480, 940
Bst2UI CCWGG 1 cut(s) 914
Bst4CI ACNGT 1 cut(s) 802
Bst6I CTCTTC 3 cut(s) 398, 764, 1006
BstC8I GCNNGC 5 cut(s) 406, 427, 593, 680, 910
BstDEI CTNAG 1 cut(s) 704
BstDSI CCRYGG 1 cut(s) 264
BstF5I GGATG 4 cut(s) 361, 505, 643, 691
BstHHI GCGC 4 cut(s) 404, 425, 626, 656
BstKTI GATC 3 cut(s) 739, 846, 1007
BstMBI GATC 3 cut(s) 736, 843, 1004
BstMWI GCNNNNNNNGC 2 cut(s) 830, 914
BstNI CCWGG 1 cut(s) 914
BstNSI RCATGY 1 cut(s) 895
BstSCI CCNGG 1 cut(s) 912
BstSFI CTRYAG 1 cut(s) 903
BstSLI GKGCMC 1 cut(s) 782
BstV1I GCAGC 3 cut(s) 638, 744, 917
BstV2I GAAGAC 2 cut(s) 59, 206
BstXI CCANNNNNNTGG 1 cut(s) 895
Bsu15I ATCGAT 1 cut(s) 116
BsuTUI ATCGAT 1 cut(s) 116
BtgI CCRYGG 1 cut(s) 264
BtsCI GGATG 4 cut(s) 361, 505, 643, 691
BveI ACCTGC 3 cut(s) 407, 617, 724
Cac8I GCNNGC 5 cut(s) 406, 427, 593, 680, 910
CciI TCATGA 1 cut(s) 466
CfoI GCGC 4 cut(s) 404, 425, 626, 656
Cfr10I RCCGGY 1 cut(s) 404
Cfr13I GGNCC 1 cut(s) 388
ClaI ATCGAT 1 cut(s) 116
Csp6I GTAC 2 cut(s) 418, 790
CviAII CATG 6 cut(s) 265, 374, 467, 658, 821, 892
CviJI RGCY 9 cut(s) 408, 485, 533, 595, 606, 678, 886, 908, 961
CviKI_1 RGCY 9 cut(s) 408, 485, 533, 595, 606, 678, 886, 908, 961
CviQI GTAC 2 cut(s) 418, 790
DdeI CTNAG 1 cut(s) 704
DpnI GATC 3 cut(s) 738, 845, 1006
DpnII GATC 3 cut(s) 736, 843, 1004
Eam1104I CTCTTC 3 cut(s) 398, 764, 1006
EarI CTCTTC 3 cut(s) 398, 764, 1006
Eco130I CCWWGG 3 cut(s) 264, 480, 940
Eco47I GGWCC 1 cut(s) 388
Eco57I CTGAAG 1 cut(s) 839
EcoRII CCWGG 1 cut(s) 912
EcoT14I CCWWGG 3 cut(s) 264, 480, 940
EcoT22I ATGCAT 1 cut(s) 645
ErhI CCWWGG 3 cut(s) 264, 480, 940
FaeI CATG 6 cut(s) 268, 377, 470, 661, 824, 895
FalI AAGNNNNNCTT 2 cut(s) 274, 306
FaqI GGGAC 2 cut(s) 260, 913
FatI CATG 6 cut(s) 264, 373, 466, 657, 820, 891
FbaI TGATCA 1 cut(s) 843
Fnu4HI GCNGC 4 cut(s) 622, 652, 733, 906
FokI GGATG 4 cut(s) 348, 492, 630, 678
Fsp4HI GCNGC 4 cut(s) 622, 652, 733, 906
FspBI CTAG 1 cut(s) 878
GlaI GCGC 4 cut(s) 403, 424, 625, 655
GluI GCNGC 4 cut(s) 622, 652, 733, 906
GsaI CCCAGC 1 cut(s) 891
GsuI CTGGAG 1 cut(s) 474
HapII CCGG 2 cut(s) 386, 405
HhaI GCGC 4 cut(s) 404, 425, 626, 656
Hin1II CATG 6 cut(s) 268, 377, 470, 661, 824, 895
Hin6I GCGC 4 cut(s) 402, 423, 624, 654
HinP1I GCGC 4 cut(s) 402, 423, 624, 654
HincII GTYRAC 1 cut(s) 446
HindII GTYRAC 1 cut(s) 446
HinfI GANTC 2 cut(s) 230, 502
HpaII CCGG 2 cut(s) 386, 405
HphI GGTGA 4 cut(s) 344, 388, 767, 991
Hpy166II GTNNAC 4 cut(s) 379, 438, 446, 790
Hpy188I TCNGA 4 cut(s) 229, 617, 670, 741
Hpy188III TCNNGA 5 cut(s) 467, 637, 857, 871, 1008
Hpy8I GTNNAC 4 cut(s) 379, 438, 446, 790
HpyAV CCTTC 2 cut(s) 520, 962
HpyCH4III ACNGT 1 cut(s) 802
HpyF10VI GCNNNNNNNGC 2 cut(s) 830, 914
HpyF3I CTNAG 1 cut(s) 704
Hsp92II CATG 6 cut(s) 268, 377, 470, 661, 824, 895
HspAI GCGC 4 cut(s) 402, 423, 624, 654
KroI GCCGGC 1 cut(s) 404
KroNI GCCGGC 1 cut(s) 406
Ksp22I TGATCA 1 cut(s) 843
Kzo9I GATC 3 cut(s) 736, 843, 1004
LmnI GCTCC 2 cut(s) 345, 490
Lsp1109I GCAGC 3 cut(s) 638, 744, 917
LweI GCATC 8 cut(s) 19, 327, 608, 630, 652, 728, 876, 926
MaeI CTAG 1 cut(s) 878
MaeIII GTNAC 3 cut(s) 350, 806, 997
MalI GATC 3 cut(s) 738, 845, 1006
MbiI CCGCTC 1 cut(s) 251
MboI GATC 3 cut(s) 736, 843, 1004
MhlI GDGCHC 1 cut(s) 782
MluCI AATT 3 cut(s) 79, 93, 269
MlyI GAGTC 1 cut(s) 511
Mph1103I ATGCAT 1 cut(s) 645
MroNI GCCGGC 1 cut(s) 404
MroXI GAANNNNTTC 1 cut(s) 211
MseI TTAA 1 cut(s) 96
MslI CAYNNNNRTG 4 cut(s) 161, 164, 785, 819
MspI CCGG 2 cut(s) 386, 405
MspR9I CCNGG 1 cut(s) 914
MvaI CCWGG 1 cut(s) 914
MwoI GCNNNNNNNGC 2 cut(s) 830, 914
NaeI GCCGGC 1 cut(s) 406
NcoI CCATGG 1 cut(s) 264
NdeII GATC 3 cut(s) 736, 843, 1004
NgoMIV GCCGGC 1 cut(s) 404
NlaIII CATG 6 cut(s) 268, 377, 470, 661, 824, 895
NlaIV GGNNCC 2 cut(s) 486, 781
NmuCI GTSAC 3 cut(s) 350, 806, 997
NsiI ATGCAT 1 cut(s) 645
NspI RCATGY 1 cut(s) 895
OliI CACNNNNGTG 1 cut(s) 785
PagI TCATGA 1 cut(s) 466
PaqCI CACCTGC 1 cut(s) 407
PdiI GCCGGC 1 cut(s) 406
PdmI GAANNNNTTC 1 cut(s) 211
PfeI GAWTC 1 cut(s) 230
PkrI GCNGC 4 cut(s) 623, 653, 734, 907
PleI GAGTC 1 cut(s) 510
PpsI GAGTC 1 cut(s) 510
Psp6I CCWGG 1 cut(s) 912
PspFI CCCAGC 1 cut(s) 887
PspGI CCWGG 1 cut(s) 912
PspN4I GGNNCC 2 cut(s) 486, 781
PspPI GGNCC 1 cut(s) 388
PstI CTGCAG 1 cut(s) 907
RsaI GTAC 2 cut(s) 419, 791
RsaNI GTAC 2 cut(s) 418, 790
RseI CAYNNNNRTG 4 cut(s) 161, 164, 785, 819
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 4 cut(s) 622, 652, 733, 906
Sau3AI GATC 3 cut(s) 736, 843, 1004
Sau96I GGNCC 1 cut(s) 388
SchI GAGTC 1 cut(s) 511
ScrFI CCNGG 1 cut(s) 914
SduI GDGCHC 1 cut(s) 782
SfaNI GCATC 8 cut(s) 19, 327, 608, 630, 652, 728, 876, 926
SfcI CTRYAG 1 cut(s) 903
SinI GGWCC 1 cut(s) 388
SmiMI CAYNNNNRTG 4 cut(s) 161, 164, 785, 819
SmlI CTYRAG 1 cut(s) 921
SmoI CTYRAG 1 cut(s) 921
Sse9I AATT 3 cut(s) 79, 93, 269
SsiI CCGC 3 cut(s) 249, 621, 824
SspI AATATT 1 cut(s) 61
SspMI CTAG 1 cut(s) 878
StyD4I CCNGG 1 cut(s) 912
StyI CCWWGG 3 cut(s) 264, 480, 940
TaaI ACNGT 1 cut(s) 802
TaqI TCGA 3 cut(s) 116, 572, 933
TasI AATT 3 cut(s) 79, 93, 269
TauI GCSGC 1 cut(s) 624
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TseFI GTSAC 3 cut(s) 350, 806, 997
TseI GCWGC 3 cut(s) 651, 732, 905
Tsp45I GTSAC 3 cut(s) 350, 806, 997
TspDTI ATGAA 2 cut(s) 455, 809
VpaK11BI GGWCC 1 cut(s) 388
XapI RAATTY 1 cut(s) 269
XceI RCATGY 1 cut(s) 895
XmnI GAANNNNTTC 1 cut(s) 211
XspI CTAG 1 cut(s) 878
Zsp2I ATGCAT 1 cut(s) 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.