Rh7BG400700

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000444
Physical Location & Seq
Forward (+)
44522405 .. 44523197
793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG400700.1

Sequence Viewer

Length: 708 bp
ATGGGTGCGAGCCCGAATCGTAGTTTTAGTGAACTAGACAATGTGTTTGCTGAAAATGAGGTTGGAGGGCCCAATTTGATGAATCAAGAGGAAGATGTGGGAATGAGTGTTGATAATGGGATTAGGGTTAGGGTTGGTGATAATCTGACTGATGTGCCTCTTGAGATTGCTGATTGTTTTAGGAGTGATGTTCTAGAGGGATTGACTACTGTGCCTCTTGCAGTAGTTGACTCGTATAAGGGTAATGCTGTAGGGAGAAAAGTTGGAGTACCGAATTTCAGTTTTTCGGAAAATCGAGAGGAGGGTGTTGATAGACAAGTAGGGTGGAGGGGTGGAACTTCTTTTGTAGCTACTACTGCTGGTTTGGGTTCTGGTTCTGCTAATGCTAATGCTACAAAACTGAGTTATGTCCCAGCTCCTATTCGTAAAGTTGGCACAAGTAATTCAAACGGGAAAAACAGGAAGAGGGTAAGAGATGAAAATGGATCAATGGCTGCCAATGCTGGCACTGCTGGCAGTAATGGTGAAGTTGAAAAGGCGAACTGTCAGCAGATTCATATGGCAATAGGACGGTTTCTATATGAAATTCAGGCTCCTCTGGATGCCGTGAAGAACTCTGTTTATTTTCAACCAATGATTGATGCAATTGCTTCTGGGGGAATGGAGAGTAAACCACCCTCGTATCATGATCTTCGGGGTTGGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

235

Amino Acids

25.02

Weight (kDa)

5.18

Isoelectric Point (pI)

27.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22220 AT3G22220 AT3G22220 AT3G22220 AT4G15020 AT4G15020
fragaria_vesca FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_7g22891 FvH4_7g22891 FvH4_7g22891
malus_domestica MD01G1137200.v1.1 MD02G1265900.v1.1 MD07G1202100.v1.1 MD09G1137900.v1.1 MD09G1138100.v1.1 MD17G1128400.v1.1
prunus_persica Prupe.2G058600_v2.0.a1 Prupe.2G058600_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1
pyrus_communis pycom01g15800 pycom01g15810 pycom01g15840 pycom02g22730 pycom07g18920 pycom07g18930 pycom09g05900 pycom17g12060
rosa_chinensis RchiOBHm_Chr1g0368051 RchiOBHm_Chr2g0153631 RchiOBHm_Chr2g0153641 RchiOBHm_Chr7g0237231
rosa_laevigata RLG00000001022 RLG00000020718
rosa_multiflora Rmu_sc0002117.1_g000006 Rmu_sc0004952.1_g000008 Rmu_sc0005823.1_g000001 Rmu_sc0013273.1_g000001 Rmu_sc0028071.1_g000001
rosa_roxburghii Rroxscaffold_1G00016080 Rroxscaffold_2G00094830 Rroxscaffold_4G00288900
rosa_rugosa Rorug01G0338600 Rorug01G0338700 Rorug02G0441100 Rorug02G0441200 Rorug04G0167900 Rorug07G0273200 Rorug07G0273300 Rorug07G0297100 Rorug07G0297200 Rorug07G0297300
rosa_samantha Rh1AG102500 Rh1AG102600 Rh1AG102700 Rh1AG345600 Rh1BG307900 Rh1CG323500 Rh1DG340000 Rh2AG504100 Rh2BG514800 Rh2CG490100 Rh2DG526900 Rh7AG451500 Rh7AG451700 Rh7AG459100 Rh7AG459200 Rh7BG400700 Rh7BG400800 Rh7BG421300 Rh7BG421400 Rh7BG423400 Rh7BG423500 Rh7BG423800 Rh7BG423900 Rh7CG471000 Rh7CG471100 Rh7CG471200
rosa_wichuraiana Rw1G030760 Rw2G041430 Rw5G036050 Rw7G038020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 493
AcsI RAATTY 2 cut(s) 274, 585
AfaI GTAC 1 cut(s) 270
AgsI TTSAA 3 cut(s) 447, 533, 629
AjuI GAANNNNNNNTTGG 2 cut(s) 45, 77
AluBI AGCT 2 cut(s) 350, 416
AluI AGCT 2 cut(s) 350, 416
AlwI GGATC 1 cut(s) 493
AoxI GGCC 1 cut(s) 68
ApaI GGGCCC 1 cut(s) 72
ApeKI GCWGC 1 cut(s) 494
ApoI RAATTY 2 cut(s) 274, 585
ArsI GACNNNNNNTTYG 2 cut(s) 29, 61
AspS9I GGNCC 2 cut(s) 68, 69
AsuHPI GGTGA 2 cut(s) 149, 536
BaeGI GKGCMC 1 cut(s) 72
BaeI ACNNNNGTAYC 2 cut(s) 665, 698
BanII GRGCYC 2 cut(s) 14, 72
BbvI GCAGC 1 cut(s) 481
BceAI ACGGC 1 cut(s) 590
BfaI CTAG 2 cut(s) 35, 194
BfmI CTRYAG 1 cut(s) 249
BisI GCNGC 1 cut(s) 495
BlsI GCNGC 1 cut(s) 496
BmgT120I GGNCC 2 cut(s) 68, 69
BmiI GGNNCC 2 cut(s) 70, 594
BmsI GCATC 2 cut(s) 592, 631
BpuEI CTTGAG 1 cut(s) 182
BseGI GGATG 1 cut(s) 607
BseMII CTCAG 1 cut(s) 392
BseRI GAGGAG 2 cut(s) 314, 585
BseSI GKGCMC 1 cut(s) 72
BseXI GCAGC 1 cut(s) 481
BseYI CCCAGC 1 cut(s) 412
BshFI GGCC 1 cut(s) 70
BslFI GGGAC 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 395
BsnI GGCC 1 cut(s) 70
Bsp120I GGGCCC 1 cut(s) 68
Bsp1286I GDGCHC 2 cut(s) 14, 72
Bsp143I GATC 2 cut(s) 485, 688
BspANI GGCC 1 cut(s) 70
BspCNI CTCAG 1 cut(s) 393
BspHI TCATGA 1 cut(s) 685
BspLI GGNNCC 2 cut(s) 70, 594
BspPI GGATC 1 cut(s) 493
BssMI GATC 2 cut(s) 485, 688
Bst4CI ACNGT 3 cut(s) 211, 545, 573
Bst6I CTCTTC 1 cut(s) 458
BstC8I GCNNGC 3 cut(s) 10, 505, 514
BstDEI CTNAG 1 cut(s) 401
BstF5I GGATG 1 cut(s) 607
BstKTI GATC 2 cut(s) 488, 691
BstMBI GATC 2 cut(s) 485, 688
BstMWI GCNNNNNNNGC 4 cut(s) 356, 500, 509, 513
BstSFI CTRYAG 1 cut(s) 249
BstSLI GKGCMC 1 cut(s) 72
BstV1I GCAGC 1 cut(s) 481
BsuRI GGCC 1 cut(s) 70
BtsCI GGATG 1 cut(s) 607
BtsI GCAGTG 1 cut(s) 507
BtsIMutI CAGTG 1 cut(s) 507
Cac8I GCNNGC 3 cut(s) 10, 505, 514
CciI TCATGA 1 cut(s) 685
Cfr13I GGNCC 2 cut(s) 68, 69
Csp6I GTAC 1 cut(s) 269
CspCI CAANNNNNGTGG 2 cut(s) 305, 340
CviAII CATG 1 cut(s) 686
CviJI RGCY 6 cut(s) 12, 70, 350, 416, 494, 593
CviKI_1 RGCY 6 cut(s) 12, 70, 350, 416, 494, 593
CviQI GTAC 1 cut(s) 269
DdeI CTNAG 1 cut(s) 401
DpnI GATC 2 cut(s) 487, 690
DpnII GATC 2 cut(s) 485, 688
Eam1104I CTCTTC 1 cut(s) 458
EarI CTCTTC 1 cut(s) 458
Eco24I GRGCYC 2 cut(s) 14, 72
EcoO109I RGGNCCY 1 cut(s) 68
EcoT38I GRGCYC 2 cut(s) 14, 72
FaeI CATG 1 cut(s) 689
FaiI YATR 8 cut(s) 237, 408, 558, 560, 580, 582, 687, 706
FaqI GGGAC 1 cut(s) 395
FatI CATG 1 cut(s) 685
FauNDI CATATG 1 cut(s) 558
Fnu4HI GCNGC 1 cut(s) 495
FokI GGATG 1 cut(s) 614
FriOI GRGCYC 2 cut(s) 14, 72
Fsp4HI GCNGC 1 cut(s) 495
FspBI CTAG 2 cut(s) 35, 194
GluI GCNGC 1 cut(s) 495
GsaI CCCAGC 1 cut(s) 416
HaeIII GGCC 1 cut(s) 70
Hin1II CATG 1 cut(s) 689
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HinfI GANTC 4 cut(s) 16, 82, 230, 553
HphI GGTGA 2 cut(s) 149, 536
Hpy166II GTNNAC 3 cut(s) 32, 229, 671
Hpy188I TCNGA 2 cut(s) 147, 289
Hpy188III TCNNGA 6 cut(s) 86, 161, 194, 296, 599, 686
Hpy8I GTNNAC 3 cut(s) 32, 229, 671
HpyCH4III ACNGT 3 cut(s) 211, 545, 573
HpyCH4V TGCA 2 cut(s) 221, 644
HpyF10VI GCNNNNNNNGC 4 cut(s) 356, 500, 509, 513
HpyF3I CTNAG 1 cut(s) 401
Hsp92II CATG 1 cut(s) 689
Kzo9I GATC 2 cut(s) 485, 688
LmnI GCTCC 2 cut(s) 421, 598
LpnPI CCDG 9 cut(s) 345, 357, 426, 445, 489, 498, 575, 584, 639
Lsp1109I GCAGC 1 cut(s) 481
LweI GCATC 2 cut(s) 592, 631
MaeI CTAG 2 cut(s) 35, 194
MalI GATC 2 cut(s) 487, 690
MboI GATC 2 cut(s) 485, 688
MboII GAAGA 4 cut(s) 104, 475, 622, 683
MfeI CAATTG 1 cut(s) 645
MhlI GDGCHC 2 cut(s) 14, 72
MluCI AATT 5 cut(s) 73, 274, 442, 585, 645
MlyI GAGTC 1 cut(s) 224
MmeI TCCRAC 3 cut(s) 43, 244, 680
MunI CAATTG 1 cut(s) 645
MwoI GCNNNNNNNGC 4 cut(s) 356, 500, 509, 513
NdeI CATATG 1 cut(s) 558
NdeII GATC 2 cut(s) 485, 688
NlaIII CATG 1 cut(s) 689
NlaIV GGNNCC 2 cut(s) 70, 594
PagI TCATGA 1 cut(s) 685
PfeI GAWTC 3 cut(s) 16, 82, 553
PkrI GCNGC 1 cut(s) 496
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
PspFI CCCAGC 1 cut(s) 412
PspN4I GGNNCC 2 cut(s) 70, 594
PspOMI GGGCCC 1 cut(s) 68
PspPI GGNCC 2 cut(s) 68, 69
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
SatI GCNGC 1 cut(s) 495
Sau3AI GATC 2 cut(s) 485, 688
Sau96I GGNCC 2 cut(s) 68, 69
SchI GAGTC 1 cut(s) 224
SduI GDGCHC 2 cut(s) 14, 72
SetI ASST 3 cut(s) 63, 352, 418
SfaNI GCATC 2 cut(s) 592, 631
SfcI CTRYAG 1 cut(s) 249
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 5 cut(s) 73, 274, 442, 585, 645
SspMI CTAG 2 cut(s) 35, 194
TaaI ACNGT 3 cut(s) 211, 545, 573
TaqI TCGA 1 cut(s) 295
TasI AATT 5 cut(s) 73, 274, 442, 585, 645
TfiI GAWTC 3 cut(s) 16, 82, 553
TscAI CASTG 1 cut(s) 514
TseI GCWGC 1 cut(s) 494
TspDTI ATGAA 4 cut(s) 95, 492, 545, 597
TspRI CASTG 1 cut(s) 514
XapI RAATTY 2 cut(s) 274, 585
XbaI TCTAGA 1 cut(s) 193
XspI CTAG 2 cut(s) 35, 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.