Rh7BG400800

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000444
Physical Location & Seq
Forward (+)
44523994 .. 44524281
288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG400800.1

Sequence Viewer

Length: 288 bp
ATGGCTTATTGGAATATTATAGATTACAGGTGGCAAAAATTATGGGATCTTCCTCTTCATGCTGCTGGTTTTTACCTTAATCCCAAGTTTTTCTATAGCATCAAGGGAGAAATGCACAAGGTGATTATGTCAAAGATGCTTGACTGCATAGAGAAATTGGTTCCAGATTTAAAAGTTCAAGATGAAATCAGCAAAGAGATAAACTTGTACAAAAATGCTGTTGGAGATCTGGGGAGGAATTTGGCCATTAGAGCCAGAGACACTCTGCTTCCCGGTGAGGATATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

95

Amino Acids

11.14

Weight (kDa)

6.72

Isoelectric Point (pI)

54.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22220 AT3G22220 AT3G22220 AT3G22220 AT4G15020 AT4G15020
fragaria_vesca FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_6g39601 FvH4_7g22891 FvH4_7g22891 FvH4_7g22891
malus_domestica MD01G1137200.v1.1 MD02G1265900.v1.1 MD07G1202100.v1.1 MD09G1137900.v1.1 MD09G1138100.v1.1 MD17G1128400.v1.1
prunus_persica Prupe.2G058600_v2.0.a1 Prupe.2G058600_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1 Prupe.3G186900_v2.0.a1
pyrus_communis pycom01g15800 pycom01g15810 pycom01g15840 pycom02g22730 pycom07g18920 pycom07g18930 pycom09g05900 pycom17g12060
rosa_chinensis RchiOBHm_Chr1g0368051 RchiOBHm_Chr2g0153631 RchiOBHm_Chr2g0153641 RchiOBHm_Chr7g0237231
rosa_laevigata RLG00000001022 RLG00000020718
rosa_multiflora Rmu_sc0002117.1_g000006 Rmu_sc0004952.1_g000008 Rmu_sc0005823.1_g000001 Rmu_sc0013273.1_g000001 Rmu_sc0028071.1_g000001
rosa_roxburghii Rroxscaffold_1G00016080 Rroxscaffold_2G00094830 Rroxscaffold_4G00288900
rosa_rugosa Rorug01G0338600 Rorug01G0338700 Rorug02G0441100 Rorug02G0441200 Rorug04G0167900 Rorug07G0273200 Rorug07G0273300 Rorug07G0297100 Rorug07G0297200 Rorug07G0297300
rosa_samantha Rh1AG102500 Rh1AG102600 Rh1AG102700 Rh1AG345600 Rh1BG307900 Rh1CG323500 Rh1DG340000 Rh2AG504100 Rh2BG514800 Rh2CG490100 Rh2DG526900 Rh7AG451500 Rh7AG451700 Rh7AG459100 Rh7AG459200 Rh7BG400700 Rh7BG400800 Rh7BG421300 Rh7BG421400 Rh7BG423400 Rh7BG423500 Rh7BG423800 Rh7BG423900 Rh7CG471000 Rh7CG471100 Rh7CG471200
rosa_wichuraiana Rw1G030760 Rw2G041430 Rw5G036050 Rw7G038020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 54
AcoI YGGCCR 1 cut(s) 243
AcsI RAATTY 1 cut(s) 238
AdeI CACNNNGTG 1 cut(s) 121
AfaI GTAC 1 cut(s) 209
AgsI TTSAA 1 cut(s) 179
Alw26I GTCTC 1 cut(s) 252
AlwI GGATC 1 cut(s) 54
AoxI GGCC 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 62
ApoI RAATTY 1 cut(s) 238
AsuC2I CCSGG 1 cut(s) 273
AsuHPI GGTGA 2 cut(s) 133, 287
BalI TGGCCA 1 cut(s) 245
BbvI GCAGC 1 cut(s) 49
BcnI CCSGG 1 cut(s) 273
BcoDI GTCTC 1 cut(s) 252
BfaI CTAG 1 cut(s) 286
BfmI CTRYAG 1 cut(s) 94
BglII AGATCT 1 cut(s) 226
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme1390I CCNGG 1 cut(s) 273
BmiI GGNNCC 1 cut(s) 162
BmrFI CCNGG 1 cut(s) 273
BmsI GCATC 2 cut(s) 108, 126
BpuMI CCSGG 1 cut(s) 273
BseXI GCAGC 1 cut(s) 49
BshFI GGCC 1 cut(s) 245
BsiSI CCGG 1 cut(s) 273
BsmAI GTCTC 1 cut(s) 252
BsnI GGCC 1 cut(s) 245
Bsp1407I TGTACA 1 cut(s) 207
Bsp143I GATC 2 cut(s) 46, 226
BspANI GGCC 1 cut(s) 245
BspLI GGNNCC 1 cut(s) 162
BspPI GGATC 1 cut(s) 54
BsrGI TGTACA 1 cut(s) 207
BssMI GATC 2 cut(s) 46, 226
Bst6I CTCTTC 1 cut(s) 60
BstAUI TGTACA 1 cut(s) 207
BstKTI GATC 2 cut(s) 49, 229
BstMAI GTCTC 1 cut(s) 252
BstMBI GATC 2 cut(s) 46, 226
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 271
BstSFI CTRYAG 1 cut(s) 94
BstV1I GCAGC 1 cut(s) 49
BstX2I RGATCY 2 cut(s) 46, 226
BstYI RGATCY 2 cut(s) 46, 226
BsuRI GGCC 1 cut(s) 245
Csp6I GTAC 1 cut(s) 208
CviAII CATG 1 cut(s) 59
CviJI RGCY 3 cut(s) 5, 245, 254
CviKI_1 RGCY 3 cut(s) 5, 245, 254
CviQI GTAC 1 cut(s) 208
DpnI GATC 2 cut(s) 48, 228
DpnII GATC 2 cut(s) 46, 226
DraI TTTAAA 1 cut(s) 171
DraIII CACNNNGTG 1 cut(s) 121
EaeI YGGCCR 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco32I GATATC 1 cut(s) 283
EcoRV GATATC 1 cut(s) 283
FaeI CATG 1 cut(s) 62
FaiI YATR 6 cut(s) 20, 43, 60, 96, 128, 149
FatI CATG 1 cut(s) 58
Fnu4HI GCNGC 1 cut(s) 63
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 1 cut(s) 286
GluI GCNGC 1 cut(s) 63
HaeIII GGCC 1 cut(s) 245
HapII CCGG 1 cut(s) 273
Hin1II CATG 1 cut(s) 62
HpaII CCGG 1 cut(s) 273
HphI GGTGA 2 cut(s) 133, 287
Hpy188III TCNNGA 2 cut(s) 164, 179
HpyCH4V TGCA 2 cut(s) 115, 147
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
Hsp92II CATG 1 cut(s) 62
Kzo9I GATC 2 cut(s) 46, 226
LpnPI CCDG 5 cut(s) 13, 51, 177, 215, 268
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 2 cut(s) 108, 126
MaeI CTAG 1 cut(s) 286
MalI GATC 2 cut(s) 48, 228
MboI GATC 2 cut(s) 46, 226
MboII GAAGA 2 cut(s) 41, 47
MflI RGATCY 2 cut(s) 46, 226
MlsI TGGCCA 1 cut(s) 245
MluCI AATT 3 cut(s) 38, 155, 238
MluNI TGGCCA 1 cut(s) 245
MmeI TCCRAC 1 cut(s) 202
MnlI CCTC 3 cut(s) 63, 228, 271
Mox20I TGGCCA 1 cut(s) 245
MscI TGGCCA 1 cut(s) 245
MseI TTAA 2 cut(s) 78, 170
Msp20I TGGCCA 1 cut(s) 245
MspI CCGG 1 cut(s) 273
MspR9I CCNGG 1 cut(s) 273
MwoI GCNNNNNNNGC 1 cut(s) 251
NciI CCSGG 1 cut(s) 273
NdeII GATC 2 cut(s) 46, 226
NlaIII CATG 1 cut(s) 62
NlaIV GGNNCC 1 cut(s) 162
PkrI GCNGC 1 cut(s) 64
PspN4I GGNNCC 1 cut(s) 162
PsuI RGATCY 2 cut(s) 46, 226
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SaqAI TTAA 2 cut(s) 78, 170
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 2 cut(s) 46, 226
ScrFI CCNGG 1 cut(s) 273
SetI ASST 3 cut(s) 32, 78, 123
SfaNI GCATC 2 cut(s) 108, 126
SfcI CTRYAG 1 cut(s) 94
Sse9I AATT 3 cut(s) 38, 155, 238
SspI AATATT 1 cut(s) 16
SspMI CTAG 1 cut(s) 286
StyD4I CCNGG 1 cut(s) 271
TasI AATT 3 cut(s) 38, 155, 238
TatI WGTACW 1 cut(s) 207
Tru1I TTAA 2 cut(s) 78, 170
Tru9I TTAA 2 cut(s) 78, 170
TseI GCWGC 1 cut(s) 62
TspDTI ATGAA 2 cut(s) 47, 198
XapI RAATTY 1 cut(s) 238
XspI CTAG 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.