Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001385

Physical Location & Seq

Genomic Coordinates Forward (+)

12443990 .. 12444947

Gene Structure 958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43191

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAGTTTATGTATGTTGGGTTCTCAGCTTCAACAGGTCTGCTTGCTATGTCCCACTACATTCTTGGCTGGAGCTTCAAGATTGATGGACAGCCCCAACCCCTTCATCTGGCCTCTCTTCCTAAAATTCCAAAACCCAAAAAAAAATCACACAGCTCTGAAAATCGGAGTCTCAGTCGCAGCCATTGCTCTCACTCCATCTGTAATCTCCTTATCCGTCTACTTATTCATCAAGAAGCTCAAGAACACCGAGCCAATGGAGTCATGGGAGCTCGAGCTCGGCCCACACAGATACTCCTACCAAGAACTGAAAAAGGCCACAAAAGGGTTCAGAGGAAAAGAGCTCCTCGGCGAAGGCGGGTTCGGCCAAGTATTCAAAGGAACCCAAGTAGCCGTCAAGCGAATCTCGAACGATTCGAAACAGGGTCTAAGGGAATTCGTGGAGGAAATCGCAAGCATAGGTAGGCTCCGCCATAGAAATCTAGTCCAATTACTGGGATGGTTTGGGATTATAAAGGGGATTGCTTCTGCGCTTCATTATCTACCCGAAGGGTTTGAGCAGGTTGTGGTTCACAGAGATGTCAAGGCCAGCAATGTGTTGCTGGATAGTGAAATGAATGGGAGGCTTGGGGATTTTGGGTTGGCGAGGCTGCATGAACAGGGGTCGAACTCGAATACGACTCGGGTCGTGGGTACGCTCGGGTATTTGGCTCCGGAGTTGCCGAGAAACGGGAAGGCTAGTACGGGTTCGGATGTGTATGCGTTTGGCGCGCTTTTGCTGGAGGTGGTATGCGGGCGGAGGCCCATTGAGCCCAACGCGAGGCCCGGGGAGTTGGTTTTGGTAGACTGGGTGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

285

Amino Acids

31.37

Weight (kDa)

9.35

Isoelectric Point (pI)

32.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	113 - 168	4.3e-06	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	113 - 167	7.6e-06	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	170 - 270	9.6e-23	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	170 - 270	8.9e-19	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55550
fragaria_vesca	FvH4_6g13180 FvH4_7g22900
malus_domestica	MD01G1137300.v1.1 MD01G1137400.v1.1 MD01G1137500.v1.1 MD01G1137600.v1.1 MD01G1137700.v1.1 MD04G1133700.v1.1 MD04G1133800.v1.1 MD12G1147700.v1.1
prunus_persica	Prupe.2G238700_v2.0.a1
pyrus_communis	pycom01g15830 pycom01g15860 pycom01g15870 pycom01g15880 pycom04g12170 pycom12g14140
rosa_chinensis	RchiOBHm_Chr1g0368061 RchiOBHm_Chr3g0465661 RchiOBHm_Chr3g0465671 RchiOBHm_Chr3g0465791 RchiOBHm_Chr4g0404141
rosa_laevigata	RLG00000024618 RLG00000024629 RLG00000024630 RLG00000027242
rosa_multiflora	Rmu_sc0000550.1_g000019 Rmu_sc0005103.1_g000004 Rmu_sc0007705.1_g000006 Rmu_sc0007705.1_g000016 Rmu_sc0007705.1_g000021 Rmu_sc0013273.1_g000002
rosa_roxburghii	Rroxscaffold_4G00288890 Rroxscaffold_6G00414940
rosa_rugosa	Rorug01G0338700 Rorug03G0078100 Rorug03G0078200
rosa_samantha	Rh1AG345700 Rh1BG308000 Rh1CG323600 Rh1DG340100 Rh3BG143600 Rh3CG144600 Rh3CG144700 Rh3CG144800 Rh3CG145700 Rh3DG144900 Rh4AG123100 Rh4BG116200
rosa_wichuraiana	Rw1G030770 Rw3G011660 Rw3G011700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	512
Acc36I	ACCTGC	1 cut(s)	550
AccB7I	CCANNNNNTGG	1 cut(s)	493
AccI	GTMKAC	2 cut(s)	219, 843
AccII	CGCG	2 cut(s)	770, 818
AccIII	TCCGGA	1 cut(s)	712
AciI	CCGC	4 cut(s)	357, 469, 792, 796
AcoI	YGGCCR	1 cut(s)	364
AcsI	RAATTY	2 cut(s)	125, 434
AfaI	GTAC	2 cut(s)	694, 742
AfiI	CCNNNNNNNGG	5 cut(s)	108, 324, 493, 728, 819
AgsI	TTSAA	3 cut(s)	32, 78, 376
AluBI	AGCT	7 cut(s)	28, 74, 155, 238, 271, 277, 343
AluI	AGCT	7 cut(s)	28, 74, 155, 238, 271, 277, 343
Alw21I	GWGCWC	3 cut(s)	273, 279, 345
Alw26I	GTCTC	1 cut(s)	175
Ama87I	CYCGRG	4 cut(s)	272, 681, 698, 824
Aor13HI	TCCGGA	1 cut(s)	712
AoxI	GGCC	7 cut(s)	110, 280, 315, 364, 585, 800, 821
ApeKI	GCWGC	2 cut(s)	179, 649
ApoI	RAATTY	2 cut(s)	125, 434
AspLEI	GCGC	3 cut(s)	532, 770, 772
AspS9I	GGNCC	3 cut(s)	281, 801, 822
AsuC2I	CCSGG	2 cut(s)	825, 826
AsuII	TTCGAA	1 cut(s)	416
AvaI	CYCGRG	4 cut(s)	272, 681, 698, 824
BanII	GRGCYC	4 cut(s)	273, 279, 345, 813
Bbv12I	GWGCWC	3 cut(s)	273, 279, 345
BbvI	GCAGC	2 cut(s)	191, 636
BccI	CCATC	3 cut(s)	79, 205, 492
BceAI	ACGGC	1 cut(s)	377
BcnI	CCSGG	2 cut(s)	825, 826
BcoDI	GTCTC	1 cut(s)	175
BfaI	CTAG	2 cut(s)	482, 738
BfuAI	ACCTGC	1 cut(s)	550
BisI	GCNGC	2 cut(s)	180, 650
BlsI	GCNGC	2 cut(s)	181, 651
Bme1390I	CCNGG	2 cut(s)	825, 826
BmeT110I	CYCGRG	4 cut(s)	272, 681, 698, 824
BmgT120I	GGNCC	3 cut(s)	281, 801, 822
BmiI	GGNNCC	3 cut(s)	382, 467, 711
BmrFI	CCNGG	2 cut(s)	825, 826
BmrI	ACTGGG	2 cut(s)	503, 856
BmuI	ACTGGG	2 cut(s)	503, 856
BoxI	GACNNNNGTC	1 cut(s)	683
BpmI	CTGGAG	2 cut(s)	90, 800
Bpu14I	TTCGAA	1 cut(s)	416
BpuEI	CTTGAG	1 cut(s)	224
BpuMI	CCSGG	2 cut(s)	825, 826
BsaJI	CCNNGG	3 cut(s)	346, 824, 825
BsaWI	WCCGGW	1 cut(s)	712
BsaXI	ACNNNNNCTCC	4 cut(s)	159, 189, 278, 308
Bsc4I	CCNNNNNNNGG	5 cut(s)	108, 324, 493, 728, 819
Bse1I	ACTGG	2 cut(s)	498, 851
Bse3DI	GCAATG	2 cut(s)	183, 598
BseAI	TCCGGA	1 cut(s)	712
BseDI	CCNNGG	3 cut(s)	346, 824, 825
BseGI	GGATG	2 cut(s)	503, 757
BseLI	CCNNNNNNNGG	5 cut(s)	108, 324, 493, 728, 819
BseMI	GCAATG	2 cut(s)	183, 598
BseMII	CTCAG	2 cut(s)	38, 186
BseNI	ACTGG	2 cut(s)	498, 851
BsePI	GCGCGC	1 cut(s)	768
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	2 cut(s)	191, 636
Bsh1236I	CGCG	2 cut(s)	770, 818
BshFI	GGCC	7 cut(s)	112, 282, 317, 366, 587, 802, 823
BsiHKAI	GWGCWC	3 cut(s)	273, 279, 345
BsiHKCI	CYCGRG	4 cut(s)	272, 681, 698, 824
BsiSI	CCGG	2 cut(s)	713, 825
BslFI	GGGAC	1 cut(s)	36
BslI	CCNNNNNNNGG	5 cut(s)	108, 324, 493, 728, 819
BsmAI	GTCTC	1 cut(s)	175
BsmFI	GGGAC	1 cut(s)	36
BsnI	GGCC	7 cut(s)	112, 282, 317, 366, 587, 802, 823
BsoBI	CYCGRG	4 cut(s)	272, 681, 698, 824
Bsp119I	TTCGAA	1 cut(s)	416
Bsp1286I	GDGCHC	4 cut(s)	273, 279, 345, 813
Bsp13I	TCCGGA	1 cut(s)	712
BspACI	CCGC	4 cut(s)	357, 469, 792, 796
BspANI	GGCC	7 cut(s)	112, 282, 317, 366, 587, 802, 823
BspCNI	CTCAG	2 cut(s)	37, 185
BspEI	TCCGGA	1 cut(s)	712
BspFNI	CGCG	2 cut(s)	770, 818
BspLI	GGNNCC	3 cut(s)	382, 467, 711
BspMI	ACCTGC	1 cut(s)	550
BspT104I	TTCGAA	1 cut(s)	416
BsrDI	GCAATG	2 cut(s)	183, 598
BsrI	ACTGG	2 cut(s)	498, 851
BssECI	CCNNGG	3 cut(s)	346, 824, 825
BssHII	GCGCGC	1 cut(s)	768
Bst6I	CTCTTC	1 cut(s)	122
BstAPI	GCANNNNNTGC	1 cut(s)	185
BstBI	TTCGAA	1 cut(s)	416
BstC8I	GCNNGC	5 cut(s)	44, 454, 589, 770, 794
BstDEI	CTNAG	3 cut(s)	24, 172, 428
BstF5I	GGATG	2 cut(s)	503, 757
BstFNI	CGCG	2 cut(s)	770, 818
BstHHI	GCGC	3 cut(s)	532, 770, 772
BstMAI	GTCTC	1 cut(s)	175
BstMWI	GCNNNNNNNGC	4 cut(s)	185, 363, 767, 808
BstPAI	GACNNNNGTC	1 cut(s)	683
BstSCI	CCNGG	2 cut(s)	823, 824
BstUI	CGCG	2 cut(s)	770, 818
BstV1I	GCAGC	2 cut(s)	191, 636
BsuRI	GGCC	7 cut(s)	112, 282, 317, 366, 587, 802, 823
BtsCI	GGATG	2 cut(s)	503, 757
BveI	ACCTGC	1 cut(s)	550
Cac8I	GCNNGC	5 cut(s)	44, 454, 589, 770, 794
CfoI	GCGC	3 cut(s)	532, 770, 772
Cfr13I	GGNCC	3 cut(s)	281, 801, 822
Cfr9I	CCCGGG	1 cut(s)	824
Csp6I	GTAC	2 cut(s)	693, 741
CviAII	CATG	2 cut(s)	264, 653
CviQI	GTAC	2 cut(s)	693, 741
DdeI	CTNAG	3 cut(s)	24, 172, 428
EaeI	YGGCCR	1 cut(s)	364
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
EciI	GGCGGA	2 cut(s)	458, 811
Ecl136II	GAGCTC	3 cut(s)	271, 277, 343
Eco24I	GRGCYC	4 cut(s)	273, 279, 345, 813
Eco53kI	GAGCTC	3 cut(s)	271, 277, 343
Eco88I	CYCGRG	4 cut(s)	272, 681, 698, 824
EcoICRI	GAGCTC	3 cut(s)	271, 277, 343
EcoRI	GAATTC	1 cut(s)	434
EcoT38I	GRGCYC	4 cut(s)	273, 279, 345, 813
FaeI	CATG	2 cut(s)	267, 656
FaqI	GGGAC	1 cut(s)	36
FatI	CATG	2 cut(s)	263, 652
FauI	CCCGC	2 cut(s)	350, 785
FblI	GTMKAC	2 cut(s)	219, 843
Fnu4HI	GCNGC	2 cut(s)	180, 650
FokI	GGATG	2 cut(s)	510, 764
FriOI	GRGCYC	4 cut(s)	273, 279, 345, 813
Fsp4HI	GCNGC	2 cut(s)	180, 650
FspBI	CTAG	2 cut(s)	482, 738
GlaI	GCGC	3 cut(s)	531, 769, 771
GluI	GCNGC	2 cut(s)	180, 650
GsuI	CTGGAG	2 cut(s)	90, 800
HaeIII	GGCC	7 cut(s)	112, 282, 317, 366, 587, 802, 823
HapII	CCGG	2 cut(s)	713, 825
HhaI	GCGC	3 cut(s)	532, 770, 772
Hin1II	CATG	2 cut(s)	267, 656
Hin6I	GCGC	3 cut(s)	530, 768, 770
HinP1I	GCGC	3 cut(s)	530, 768, 770
HinfI	GANTC	5 cut(s)	168, 260, 402, 413, 679
HpaII	CCGG	2 cut(s)	713, 825
Hpy166II	GTNNAC	3 cut(s)	220, 571, 844
Hpy188I	TCNGA	4 cut(s)	159, 167, 332, 751
Hpy188III	TCNNGA	5 cut(s)	78, 232, 241, 406, 713
Hpy8I	GTNNAC	3 cut(s)	220, 571, 844
HpyAV	CCTTC	4 cut(s)	112, 347, 542, 727
HpyCH4V	TGCA	1 cut(s)	652
HpyF10VI	GCNNNNNNNGC	4 cut(s)	185, 363, 767, 808
HpyF3I	CTNAG	3 cut(s)	24, 172, 428
Hsp92II	CATG	2 cut(s)	267, 656
HspAI	GCGC	3 cut(s)	530, 768, 770
Kpn2I	TCCGGA	1 cut(s)	712
LmnI	GCTCC	5 cut(s)	71, 268, 348, 471, 715
Lsp1109I	GCAGC	2 cut(s)	191, 636
MaeI	CTAG	2 cut(s)	482, 738
MboII	GAAGA	1 cut(s)	109
MhlI	GDGCHC	4 cut(s)	273, 279, 345, 813
MluCI	AATT	3 cut(s)	125, 434, 488
MlyI	GAGTC	3 cut(s)	177, 269, 673
MnlI	CCTC	9 cut(s)	123, 326, 356, 436, 615, 639, 775, 792, 813
MroI	TCCGGA	1 cut(s)	712
MslI	CAYNNNNRTG	1 cut(s)	576
MspI	CCGG	2 cut(s)	713, 825
MspR9I	CCNGG	2 cut(s)	825, 826
MvnI	CGCG	2 cut(s)	770, 818
MwoI	GCNNNNNNNGC	4 cut(s)	185, 363, 767, 808
NciI	CCSGG	2 cut(s)	825, 826
NlaIII	CATG	2 cut(s)	267, 656
NlaIV	GGNNCC	3 cut(s)	382, 467, 711
NmeAIII	GCCGAG	3 cut(s)	258, 327, 747
NspV	TTCGAA	1 cut(s)	416
PaeR7I	CTCGAG	1 cut(s)	272
PauI	GCGCGC	1 cut(s)	768
PcsI	WCGNNNNNNNCGW	1 cut(s)	413
PfeI	GAWTC	2 cut(s)	402, 413
PflMI	CCANNNNNTGG	1 cut(s)	493
PkrI	GCNGC	2 cut(s)	181, 651
PleI	GAGTC	3 cut(s)	176, 268, 673
PpsI	GAGTC	3 cut(s)	176, 268, 673
PshAI	GACNNNNGTC	1 cut(s)	683
PsiI	TTATAA	1 cut(s)	512
Psp124BI	GAGCTC	3 cut(s)	273, 279, 345
PspN4I	GGNNCC	3 cut(s)	382, 467, 711
PspPI	GGNCC	3 cut(s)	281, 801, 822
PspXI	VCTCGAGB	1 cut(s)	272
PsrI	GAACNNNNNNTAC	1 cut(s)	36
PteI	GCGCGC	1 cut(s)	768
RsaI	GTAC	2 cut(s)	694, 742
RsaNI	GTAC	2 cut(s)	693, 741
RseI	CAYNNNNRTG	1 cut(s)	576
SacI	GAGCTC	3 cut(s)	273, 279, 345
SatI	GCNGC	2 cut(s)	180, 650
Sau96I	GGNCC	3 cut(s)	281, 801, 822
SchI	GAGTC	3 cut(s)	177, 269, 673
ScrFI	CCNGG	2 cut(s)	825, 826
SduI	GDGCHC	4 cut(s)	273, 279, 345, 813
Sfr274I	CTCGAG	1 cut(s)	272
SfuI	TTCGAA	1 cut(s)	416
SlaI	CTCGAG	1 cut(s)	272
SmaI	CCCGGG	1 cut(s)	826
SmiMI	CAYNNNNRTG	1 cut(s)	576
SmlI	CTYRAG	2 cut(s)	239, 272
SmoI	CTYRAG	2 cut(s)	239, 272
Sse9I	AATT	3 cut(s)	125, 434, 488
SsiI	CCGC	4 cut(s)	357, 469, 792, 796
SspMI	CTAG	2 cut(s)	482, 738
SstI	GAGCTC	3 cut(s)	273, 279, 345
StyD4I	CCNGG	2 cut(s)	823, 824
TaqI	TCGA	5 cut(s)	273, 407, 416, 665, 671
TasI	AATT	3 cut(s)	125, 434, 488
TfiI	GAWTC	2 cut(s)	402, 413
TseI	GCWGC	2 cut(s)	179, 649
TspDTI	ATGAA	5 cut(s)	94, 217, 524, 629, 669
TspGWI	ACGGA	1 cut(s)	205
TspMI	CCCGGG	1 cut(s)	824
Van91I	CCANNNNNTGG	1 cut(s)	493
XapI	RAATTY	2 cut(s)	125, 434
XcmI	CCANNNNNNNNNTGG	2 cut(s)	61, 261
XhoI	CTCGAG	1 cut(s)	272
XmaI	CCCGGG	1 cut(s)	824
XmiI	GTMKAC	2 cut(s)	219, 843
XspI	CTAG	2 cut(s)	482, 738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.