Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001385

Physical Location & Seq

Genomic Coordinates Forward (+)

12103523 .. 12104263

Gene Structure 741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG145700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGCCCTGTATGCTGAGCCTCAACACAGCTTCCAATACGAAAGCTTCCGTATGAGTTTATGTATGTTGGGTTCTCAGCTTCAACAGGTCTGCTTGCTATGTCCCACTACATTCTTGGCTGGAGCTTCAAGATTGATGGACAGCCCCAACCCCTTCATCTGGCCTCTCTTCCTAAAATTCCAAAACCCAAAAAAAAATCACACAGCTCTGAAAATCGGAGTCTCAGTCGCAGCCATTGCTCTCACTCCATCTGTAATCTCCTTATCCGTCTACTTATTCATCAAGAAGCTCAAGAACACCGAGCCAATGGAGTCATGGGAGCTCGAGCTCGGCCCACACAGATACTCCTACCAAGAACTGAAAAAGGCCACAAAAGGGTTCAGAGGAAAAGAGCTCCTCGGCGAAGGCGGGTTCGGCCAAGTATTCAAAGGAACCCAAGTAGCCGTCAAGCGAATCTCGAACGATTCGAAACAGGGTCTAAGGGAATTCGTGGAGGAAATCGCAAGCATAGGTAGGCTCCGCCATAGAAATCTAGTCCAATTACTGGGATGGTGTCGCCGACGAGGCGACCTAATGCTTTTCTATGATTACATGGAAAATGGAAGCTTGGATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

205

Amino Acids

23.3

Weight (kDa)

9.39

Isoelectric Point (pI)

43.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	130 - 204	2.3e-12	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	130 - 204	4.6e-11	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55550
fragaria_vesca	FvH4_6g13180 FvH4_7g22900
malus_domestica	MD01G1137300.v1.1 MD01G1137400.v1.1 MD01G1137500.v1.1 MD01G1137600.v1.1 MD01G1137700.v1.1 MD04G1133700.v1.1 MD04G1133800.v1.1 MD12G1147700.v1.1
prunus_persica	Prupe.2G238700_v2.0.a1
pyrus_communis	pycom01g15830 pycom01g15860 pycom01g15870 pycom01g15880 pycom04g12170 pycom12g14140
rosa_chinensis	RchiOBHm_Chr1g0368061 RchiOBHm_Chr3g0465661 RchiOBHm_Chr3g0465671 RchiOBHm_Chr3g0465791 RchiOBHm_Chr4g0404141
rosa_laevigata	RLG00000024618 RLG00000024629 RLG00000024630 RLG00000027242
rosa_multiflora	Rmu_sc0000550.1_g000019 Rmu_sc0005103.1_g000004 Rmu_sc0007705.1_g000006 Rmu_sc0007705.1_g000016 Rmu_sc0007705.1_g000021 Rmu_sc0013273.1_g000002
rosa_roxburghii	Rroxscaffold_4G00288890 Rroxscaffold_6G00414940
rosa_rugosa	Rorug01G0338700 Rorug03G0078100 Rorug03G0078200
rosa_samantha	Rh1AG345700 Rh1BG308000 Rh1CG323600 Rh1DG340100 Rh3BG143600 Rh3CG144600 Rh3CG144700 Rh3CG144800 Rh3CG145700 Rh3DG144900 Rh4AG123100 Rh4BG116200
rosa_wichuraiana	Rw1G030770 Rw3G011660 Rw3G011700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	544
AccI	GTMKAC	1 cut(s)	270
AciI	CCGC	2 cut(s)	408, 520
AcoI	YGGCCR	1 cut(s)	415
AcsI	RAATTY	2 cut(s)	176, 485
AfiI	CCNNNNNNNGG	3 cut(s)	159, 375, 544
AgsI	TTSAA	3 cut(s)	83, 129, 427
Alw21I	GWGCWC	3 cut(s)	324, 330, 396
Alw26I	GTCTC	1 cut(s)	226
Ama87I	CYCGRG	1 cut(s)	323
AoxI	GGCC	5 cut(s)	3, 161, 331, 366, 415
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	2 cut(s)	176, 485
AspS9I	GGNCC	2 cut(s)	4, 332
AsuII	TTCGAA	1 cut(s)	467
AvaI	CYCGRG	1 cut(s)	323
BanII	GRGCYC	3 cut(s)	324, 330, 396
Bbv12I	GWGCWC	3 cut(s)	324, 330, 396
BbvI	GCAGC	1 cut(s)	242
BccI	CCATC	3 cut(s)	130, 256, 543
BceAI	ACGGC	1 cut(s)	428
BcoDI	GTCTC	1 cut(s)	226
BfaI	CTAG	1 cut(s)	533
BglI	GCCNNNNNGGC	1 cut(s)	564
BisI	GCNGC	1 cut(s)	231
BlpI	GCTNAGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	232
BmeT110I	CYCGRG	1 cut(s)	323
BmgT120I	GGNCC	2 cut(s)	4, 332
BmiI	GGNNCC	2 cut(s)	433, 518
BmrI	ACTGGG	1 cut(s)	554
BmsI	GCATC	1 cut(s)	601
BmuI	ACTGGG	1 cut(s)	554
BpmI	CTGGAG	1 cut(s)	141
Bpu1102I	GCTNAGC	1 cut(s)	15
Bpu14I	TTCGAA	1 cut(s)	467
BpuEI	CTTGAG	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	397
BsaXI	ACNNNNNCTCC	4 cut(s)	210, 240, 329, 359
Bsc4I	CCNNNNNNNGG	3 cut(s)	159, 375, 544
Bse1I	ACTGG	1 cut(s)	549
Bse3DI	GCAATG	1 cut(s)	234
BseDI	CCNNGG	1 cut(s)	397
BseGI	GGATG	2 cut(s)	554, 616
BseLI	CCNNNNNNNGG	3 cut(s)	159, 375, 544
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	3 cut(s)	6, 89, 237
BseNI	ACTGG	1 cut(s)	549
BseRI	GAGGAG	1 cut(s)	386
BseXI	GCAGC	1 cut(s)	242
BshFI	GGCC	5 cut(s)	5, 163, 333, 368, 417
BsiHKAI	GWGCWC	3 cut(s)	324, 330, 396
BsiHKCI	CYCGRG	1 cut(s)	323
BslFI	GGGAC	1 cut(s)	87
BslI	CCNNNNNNNGG	3 cut(s)	159, 375, 544
BsmAI	GTCTC	1 cut(s)	226
BsmFI	GGGAC	1 cut(s)	87
BsnI	GGCC	5 cut(s)	5, 163, 333, 368, 417
BsoBI	CYCGRG	1 cut(s)	323
Bsp119I	TTCGAA	1 cut(s)	467
Bsp1286I	GDGCHC	3 cut(s)	324, 330, 396
Bsp1720I	GCTNAGC	1 cut(s)	15
BspACI	CCGC	2 cut(s)	408, 520
BspANI	GGCC	5 cut(s)	5, 163, 333, 368, 417
BspCNI	CTCAG	3 cut(s)	7, 88, 236
BspLI	GGNNCC	2 cut(s)	433, 518
BspT104I	TTCGAA	1 cut(s)	467
BsrDI	GCAATG	1 cut(s)	234
BsrI	ACTGG	1 cut(s)	549
BssECI	CCNNGG	1 cut(s)	397
Bst6I	CTCTTC	1 cut(s)	173
BstAPI	GCANNNNNTGC	1 cut(s)	236
BstBI	TTCGAA	1 cut(s)	467
BstC8I	GCNNGC	2 cut(s)	95, 505
BstDEI	CTNAG	4 cut(s)	15, 75, 223, 479
BstF5I	GGATG	2 cut(s)	554, 616
BstMAI	GTCTC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 236, 414, 564
BstV1I	GCAGC	1 cut(s)	242
BsuRI	GGCC	5 cut(s)	5, 163, 333, 368, 417
BtsCI	GGATG	2 cut(s)	554, 616
Cac8I	GCNNGC	2 cut(s)	95, 505
Cfr13I	GGNCC	2 cut(s)	4, 332
CviAII	CATG	2 cut(s)	315, 592
DdeI	CTNAG	4 cut(s)	15, 75, 223, 479
EaeI	YGGCCR	1 cut(s)	415
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
EciI	GGCGGA	1 cut(s)	509
Ecl136II	GAGCTC	3 cut(s)	322, 328, 394
Eco24I	GRGCYC	3 cut(s)	324, 330, 396
Eco53kI	GAGCTC	3 cut(s)	322, 328, 394
Eco88I	CYCGRG	1 cut(s)	323
EcoICRI	GAGCTC	3 cut(s)	322, 328, 394
EcoRI	GAATTC	1 cut(s)	485
EcoT38I	GRGCYC	3 cut(s)	324, 330, 396
FaeI	CATG	2 cut(s)	318, 595
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	2 cut(s)	314, 591
FauI	CCCGC	1 cut(s)	401
FblI	GTMKAC	1 cut(s)	270
Fnu4HI	GCNGC	1 cut(s)	231
FokI	GGATG	1 cut(s)	561
FriOI	GRGCYC	3 cut(s)	324, 330, 396
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	1 cut(s)	533
GluI	GCNGC	1 cut(s)	231
GsuI	CTGGAG	1 cut(s)	141
HaeIII	GGCC	5 cut(s)	5, 163, 333, 368, 417
Hin1II	CATG	2 cut(s)	318, 595
HindIII	AAGCTT	2 cut(s)	43, 604
HinfI	GANTC	4 cut(s)	219, 311, 453, 464
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	3 cut(s)	210, 218, 383
Hpy188III	TCNNGA	4 cut(s)	129, 283, 292, 457
Hpy8I	GTNNAC	1 cut(s)	271
Hpy99I	CGWCG	1 cut(s)	564
HpyAV	CCTTC	2 cut(s)	163, 398
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 236, 414, 564
HpyF3I	CTNAG	4 cut(s)	15, 75, 223, 479
Hsp92II	CATG	2 cut(s)	318, 595
LmnI	GCTCC	4 cut(s)	122, 319, 399, 522
LpnPI	CCDG	6 cut(s)	20, 71, 105, 145, 458, 530
Lsp1109I	GCAGC	1 cut(s)	242
LweI	GCATC	1 cut(s)	601
MaeI	CTAG	1 cut(s)	533
MboII	GAAGA	1 cut(s)	160
MhlI	GDGCHC	3 cut(s)	324, 330, 396
MluCI	AATT	3 cut(s)	176, 485, 539
MlyI	GAGTC	2 cut(s)	228, 320
MnlI	CCTC	6 cut(s)	30, 174, 377, 407, 487, 557
MwoI	GCNNNNNNNGC	4 cut(s)	11, 236, 414, 564
NlaIII	CATG	2 cut(s)	318, 595
NlaIV	GGNNCC	2 cut(s)	433, 518
NmeAIII	GCCGAG	2 cut(s)	309, 378
NspV	TTCGAA	1 cut(s)	467
PaeR7I	CTCGAG	1 cut(s)	323
PcsI	WCGNNNNNNNCGW	1 cut(s)	464
PfeI	GAWTC	2 cut(s)	453, 464
PflMI	CCANNNNNTGG	1 cut(s)	544
PkrI	GCNGC	1 cut(s)	232
PleI	GAGTC	2 cut(s)	227, 319
PpsI	GAGTC	2 cut(s)	227, 319
Psp124BI	GAGCTC	3 cut(s)	324, 330, 396
PspN4I	GGNNCC	2 cut(s)	433, 518
PspPI	GGNCC	2 cut(s)	4, 332
PspXI	VCTCGAGB	1 cut(s)	323
PsrI	GAACNNNNNNTAC	2 cut(s)	55, 87
SacI	GAGCTC	3 cut(s)	324, 330, 396
SatI	GCNGC	1 cut(s)	231
Sau96I	GGNCC	2 cut(s)	4, 332
SchI	GAGTC	2 cut(s)	228, 320
SduI	GDGCHC	3 cut(s)	324, 330, 396
SfaNI	GCATC	1 cut(s)	601
Sfr274I	CTCGAG	1 cut(s)	323
SfuI	TTCGAA	1 cut(s)	467
SlaI	CTCGAG	1 cut(s)	323
SmlI	CTYRAG	2 cut(s)	290, 323
SmoI	CTYRAG	2 cut(s)	290, 323
Sse9I	AATT	3 cut(s)	176, 485, 539
SsiI	CCGC	2 cut(s)	408, 520
SspMI	CTAG	1 cut(s)	533
SstI	GAGCTC	3 cut(s)	324, 330, 396
TaqI	TCGA	3 cut(s)	324, 458, 467
TasI	AATT	3 cut(s)	176, 485, 539
TfiI	GAWTC	2 cut(s)	453, 464
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	2 cut(s)	145, 268
TspGWI	ACGGA	2 cut(s)	38, 256
Van91I	CCANNNNNTGG	1 cut(s)	544
XapI	RAATTY	2 cut(s)	176, 485
XcmI	CCANNNNNNNNNTGG	2 cut(s)	112, 312
XhoI	CTCGAG	1 cut(s)	323
XmiI	GTMKAC	1 cut(s)	270
XspI	CTAG	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.