Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0009726

Physical Location & Seq

Genomic Coordinates Forward (+)

31609868 .. 31612195

Gene Structure 2328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1237900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGGGGTTTCTTGCACAGTTTTTCTCGCGTTTCTTTTCTCCTCGGAGTAATAACGGTGATCAAAACAAGACCAGATCCAACCGCACAGCACAAAGCCAAAACCGGGCCTTTGCGGAAGACTTCTGCCGTCGCTTTTCACTCAGCGAGATGAGAGCAGCAACACAATGTTTCAGTAACAGCTTACGTATTGCTTCAGATGACTACGGCTCGGTGTACAAGGGTACTATCGGCAGCGACAAAGTGGTTGCAATCAAACGCTTTGTGGGAGATTCAAAAGAGCAGTTCAGGACGGAGGTGCAGCTACTCTGCCAGCTGCGCCACCCAAACATTATCTCTATCATCGGATTCTGCGAAGAAAAAGAAGAGTGCCTCATCGTTTACAACTACATGTCCAATGGTGCCCTCTCTAAGTACCTTGATGATCCCCTCGATAGGGATCCAGTCCTACAGCTGTCGTGGAAGCAAAGGTTGAATATCTGCATCGGGGTGGCGAGTGCATTACAACACCTCCACACCGGGGTTAAGCATTCTATTGTCCATCGATTTGTGAATAGTTCCAATATTCTATTGGATGAACAGTTCGTGCCAAAGCTTTCCGACTTTGGGAGGTGCATGACAGGCCCTCGTACTCTGTCGAATGGATTAATTAGATGGGACTCCGTGATGGTAAATGGTACATACGGTTATATTGCTCCAGAGGCTTTCTATGGTCAACTCACGGAAAAATCTGATGTCTTCTCATTTGGATTGGTGTTATTGGAAGCCTTGTGTGGAAAATCTCTGCCAGTAGATATTTATAATTCACTGAAAACGGGTGAAACTTCTCTTGATATGATTGATCCATTTCTGACGAGACAAATAGCTCCGGACTGTTTGAAGAAATTTGTGGAAATCATCCAGAGATGTGTTCGCCCTAGCGGAGCTGAACGGCACTCAATGGGGGAAGTGGAGGTGGAACTAGAGAGCGCACTGCAGCTGCAGGAAAGTGCAGACGCCGTCTTCGAAGAAGAAACCAGCATGCTGCAGCTGTCTGTCTCACATTTCTTCTCTCTTCGGAAGAAGAAACAAAAAGATTGGGCGTTTCCAGAAGAATTATGCCATGGTTTTACACATGCTGAGATCAGTGCAGCAACTCAATGTTTCAACGAGAGCTTATGTATTGGTATGGGTAGCATTGGCTCAATATACAAAGGGTATATTAAGGTCTATGAGGGTGATGACAGGAAAGACGTCGTTGCAATCAAGGGCATTTCCAGAGTTTCAAAACAGGGAATGCGTGAGCTCAGGGCGGAGGTACAGCTGAGCTACTGTGACAGCTGCACCATCCCAACCTCACCTCTCATCGGATTCTGCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

453

Amino Acids

50.8

Weight (kDa)

6.34

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	63 - 318	4.1e-37	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	67 - 315	6.5e-33	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009726)

Species	Orthologous Gene IDs
malus_domestica	MD04G1237900.v1.1 MD04G1238200.v1.1 MD04G1238300.v1.1 MD04G1238400.v1.1 MD12G1256100.v1.1 MD12G1256200.v1.1 MD12G1256400.v1.1 MD12G1256500.v1.1
pyrus_communis	pycom02g03710 pycom04g21120 pycom04g21130 pycom12g23490 pycom12g23510 pycom17g22130
rosa_chinensis	RchiOBHm_Chr0c37g0502971 RchiOBHm_Chr6g0265111 RchiOBHm_Chr6g0265191
rosa_multiflora	Rmu_co8298979.1_g000001 Rmu_ssc0000359.1_g000070
rosa_samantha	Rh6AG136900 Rh6BG133800
rosa_wichuraiana	Rw6G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	798
AatII	GACGTC	1 cut(s)	1233
AccB1I	GGYRCC	1 cut(s)	398
AccII	CGCG	1 cut(s)	28
AccIII	TCCGGA	1 cut(s)	865
AciI	CCGC	4 cut(s)	82, 113, 918, 1289
AclWI	GGATC	5 cut(s)	69, 416, 431, 444, 833
AcsI	RAATTY	1 cut(s)	881
AcuI	CTGAAG	1 cut(s)	177
AcyI	GRCGYC	2 cut(s)	993, 1230
AfaI	GTAC	6 cut(s)	215, 223, 413, 628, 676, 1296
AfiI	CCNNNNNNNGG	6 cut(s)	103, 432, 433, 517, 603, 1343
AflIII	ACRYGT	1 cut(s)	387
AgsI	TTSAA	5 cut(s)	273, 472, 877, 1144, 1263
AloI	GAACNNNNNNTCC	2 cut(s)	563, 595
Alw21I	GWGCWC	1 cut(s)	1284
Alw26I	GTCTC	2 cut(s)	847, 1039
AlwI	GGATC	5 cut(s)	69, 416, 431, 444, 833
Aor13HI	TCCGGA	1 cut(s)	865
AoxI	GGCC	2 cut(s)	105, 619
ApoI	RAATTY	1 cut(s)	881
ArsI	GACNNNNNNTTYG	2 cut(s)	983, 1015
AseI	ATTAAT	1 cut(s)	644
AspLEI	GCGC	2 cut(s)	318, 968
AspS9I	GGNCC	2 cut(s)	105, 620
AsuC2I	CCSGG	2 cut(s)	104, 517
AsuHPI	GGTGA	4 cut(s)	68, 827, 1226, 1326
AsuII	TTCGAA	1 cut(s)	1002
BaeGI	GKGCMC	1 cut(s)	403
BamHI	GGATCC	1 cut(s)	436
BanI	GGYRCC	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	1284
BbsI	GAAGAC	3 cut(s)	123, 727, 991
Bbv12I	GWGCWC	1 cut(s)	1284
BccI	CCATC	4 cut(s)	546, 645, 658, 1331
BceAI	ACGGC	4 cut(s)	111, 220, 944, 980
BclI	TGATCA	1 cut(s)	58
BcnI	CCSGG	2 cut(s)	104, 517
BcoDI	GTCTC	2 cut(s)	847, 1039
BfaI	CTAG	2 cut(s)	915, 959
BfmI	CTRYAG	4 cut(s)	446, 971, 977, 1022
BlpI	GCTNAGC	1 cut(s)	1301
Bme1390I	CCNGG	2 cut(s)	104, 517
BmgT120I	GGNCC	2 cut(s)	105, 620
BmiI	GGNNCC	2 cut(s)	400, 438
BmrFI	CCNGG	2 cut(s)	104, 517
BmsI	GCATC	1 cut(s)	489
BpiI	GAAGAC	3 cut(s)	123, 727, 991
BpmI	CTGGAG	1 cut(s)	678
Bpu10I	CCTNAGC	1 cut(s)	1283
Bpu1102I	GCTNAGC	1 cut(s)	1301
Bpu14I	TTCGAA	1 cut(s)	1002
BpuMI	CCSGG	2 cut(s)	104, 517
Bsa29I	ATCGAT	1 cut(s)	541
BsaAI	YACGTR	1 cut(s)	185
BsaBI	GATNNNNATC	1 cut(s)	435
BsaHI	GRCGYC	2 cut(s)	993, 1230
BsaJI	CCNNGG	3 cut(s)	41, 516, 1099
BsaWI	WCCGGW	1 cut(s)	865
BsaXI	ACNNNNNCTCC	2 cut(s)	492, 522
Bsc4I	CCNNNNNNNGG	6 cut(s)	103, 432, 433, 517, 603, 1343
Bse1I	ACTGG	2 cut(s)	440, 785
Bse8I	GATNNNNATC	1 cut(s)	435
BseAI	TCCGGA	1 cut(s)	865
BseCI	ATCGAT	1 cut(s)	541
BseDI	CCNNGG	3 cut(s)	41, 516, 1099
BseGI	GGATG	3 cut(s)	577, 894, 1323
BseJI	GATNNNNATC	1 cut(s)	435
BseLI	CCNNNNNNNGG	6 cut(s)	103, 432, 433, 517, 603, 1343
BseMII	CTCAG	4 cut(s)	154, 1107, 1292, 1297
BseNI	ACTGG	2 cut(s)	440, 785
BseRI	GAGGAG	1 cut(s)	30
BseSI	GKGCMC	1 cut(s)	403
BsgI	GTGCAG	4 cut(s)	317, 1008, 1146, 1303
Bsh1236I	CGCG	1 cut(s)	28
BshFI	GGCC	2 cut(s)	107, 621
BshNI	GGYRCC	1 cut(s)	398
BshVI	ATCGAT	1 cut(s)	541
BsiHKAI	GWGCWC	1 cut(s)	1284
BsiSI	CCGG	3 cut(s)	103, 516, 866
BslFI	GGGAC	1 cut(s)	668
BslI	CCNNNNNNNGG	6 cut(s)	103, 432, 433, 517, 603, 1343
BsmAI	GTCTC	2 cut(s)	847, 1039
BsmFI	GGGAC	1 cut(s)	668
BsmI	GAATGC	2 cut(s)	526, 1278
BsnI	GGCC	2 cut(s)	107, 621
Bsp119I	TTCGAA	1 cut(s)	1002
Bsp1286I	GDGCHC	2 cut(s)	403, 1284
Bsp13I	TCCGGA	1 cut(s)	865
Bsp1407I	TGTACA	1 cut(s)	213
Bsp143I	GATC	6 cut(s)	58, 74, 421, 436, 838, 1119
Bsp1720I	GCTNAGC	1 cut(s)	1301
Bsp19I	CCATGG	1 cut(s)	1099
BspACI	CCGC	4 cut(s)	82, 113, 918, 1289
BspANI	GGCC	2 cut(s)	107, 621
BspCNI	CTCAG	4 cut(s)	153, 1108, 1293, 1296
BspDI	ATCGAT	1 cut(s)	541
BspEI	TCCGGA	1 cut(s)	865
BspFNI	CGCG	1 cut(s)	28
BspLI	GGNNCC	2 cut(s)	400, 438
BspMAI	CTGCAG	3 cut(s)	975, 981, 1026
BspPI	GGATC	5 cut(s)	69, 416, 431, 444, 833
BspT104I	TTCGAA	1 cut(s)	1002
BspT107I	GGYRCC	1 cut(s)	398
BsrGI	TGTACA	1 cut(s)	213
BsrI	ACTGG	2 cut(s)	440, 785
BssECI	CCNNGG	3 cut(s)	41, 516, 1099
BssMI	GATC	6 cut(s)	58, 74, 421, 436, 838, 1119
BssNI	GRCGYC	2 cut(s)	993, 1230
BssT1I	CCWWGG	1 cut(s)	1099
Bst4CI	ACNGT	6 cut(s)	18, 56, 579, 683, 872, 1310
Bst6I	CTCTTC	2 cut(s)	357, 1056
BstACI	GRCGYC	2 cut(s)	993, 1230
BstAUI	TGTACA	1 cut(s)	213
BstBAI	YACGTR	1 cut(s)	185
BstBI	TTCGAA	1 cut(s)	1002
BstC8I	GCNNGC	2 cut(s)	311, 1019
BstDEI	CTNAG	5 cut(s)	140, 408, 1116, 1283, 1301
BstDSI	CCRYGG	1 cut(s)	1099
BstF5I	GGATG	3 cut(s)	577, 894, 1323
BstFNI	CGCG	1 cut(s)	28
BstHHI	GCGC	2 cut(s)	318, 968
BstKTI	GATC	6 cut(s)	61, 77, 424, 439, 841, 1122
BstMAI	GTCTC	2 cut(s)	847, 1039
BstMBI	GATC	6 cut(s)	58, 74, 421, 436, 838, 1119
BstMWI	GCNNNNNNNGC	3 cut(s)	315, 618, 698
BstNSI	RCATGY	3 cut(s)	391, 1021, 1115
BstSCI	CCNGG	2 cut(s)	102, 515
BstSFI	CTRYAG	4 cut(s)	446, 971, 977, 1022
BstSLI	GKGCMC	1 cut(s)	403
BstSNI	TACGTA	1 cut(s)	185
BstUI	CGCG	1 cut(s)	28
BstV2I	GAAGAC	3 cut(s)	123, 727, 991
BstX2I	RGATCY	2 cut(s)	74, 436
BstYI	RGATCY	2 cut(s)	74, 436
Bsu15I	ATCGAT	1 cut(s)	541
BsuRI	GGCC	2 cut(s)	107, 621
BsuTUI	ATCGAT	1 cut(s)	541
BtgI	CCRYGG	1 cut(s)	1099
BtsCI	GGATG	3 cut(s)	577, 894, 1323
BtsI	GCAGTG	1 cut(s)	968
BtsIMutI	CAGTG	3 cut(s)	803, 968, 1129
Cac8I	GCNNGC	2 cut(s)	311, 1019
CfoI	GCGC	2 cut(s)	318, 968
Cfr13I	GGNCC	2 cut(s)	105, 620
ClaI	ATCGAT	1 cut(s)	541
CseI	GACGC	1 cut(s)	1001
Csp6I	GTAC	6 cut(s)	214, 222, 412, 627, 675, 1295
CviAII	CATG	5 cut(s)	388, 613, 1018, 1100, 1112
CviQI	GTAC	6 cut(s)	214, 222, 412, 627, 675, 1295
DdeI	CTNAG	5 cut(s)	140, 408, 1116, 1283, 1301
DpnI	GATC	6 cut(s)	60, 76, 423, 438, 840, 1121
DpnII	GATC	6 cut(s)	58, 74, 421, 436, 838, 1119
Eam1104I	CTCTTC	2 cut(s)	357, 1056
EarI	CTCTTC	2 cut(s)	357, 1056
EciI	GGCGGA	1 cut(s)	1304
Ecl136II	GAGCTC	1 cut(s)	1282
Eco105I	TACGTA	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	1099
Eco24I	GRGCYC	1 cut(s)	1284
Eco53kI	GAGCTC	1 cut(s)	1282
Eco57I	CTGAAG	1 cut(s)	177
EcoICRI	GAGCTC	1 cut(s)	1282
EcoO109I	RGGNCCY	1 cut(s)	620
EcoT14I	CCWWGG	1 cut(s)	1099
EcoT38I	GRGCYC	1 cut(s)	1284
ErhI	CCWWGG	1 cut(s)	1099
FaeI	CATG	5 cut(s)	391, 616, 1021, 1103, 1115
FaqI	GGGAC	1 cut(s)	668
FatI	CATG	5 cut(s)	387, 612, 1017, 1099, 1111
FbaI	TGATCA	1 cut(s)	58
FokI	GGATG	3 cut(s)	584, 881, 1310
FriOI	GRGCYC	1 cut(s)	1284
FspBI	CTAG	2 cut(s)	915, 959
GlaI	GCGC	2 cut(s)	317, 967
GsuI	CTGGAG	1 cut(s)	678
HaeIII	GGCC	2 cut(s)	107, 621
HapII	CCGG	3 cut(s)	103, 516, 866
HgaI	GACGC	1 cut(s)	1001
HhaI	GCGC	2 cut(s)	318, 968
Hin1I	GRCGYC	2 cut(s)	993, 1230
Hin1II	CATG	5 cut(s)	391, 616, 1021, 1103, 1115
Hin6I	GCGC	2 cut(s)	316, 966
HinP1I	GCGC	2 cut(s)	316, 966
HincII	GTYRAC	1 cut(s)	713
HindII	GTYRAC	1 cut(s)	713
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	4 cut(s)	269, 345, 656, 1347
HpaII	CCGG	3 cut(s)	103, 516, 866
HphI	GGTGA	4 cut(s)	68, 827, 1226, 1326
Hpy166II	GTNNAC	3 cut(s)	214, 379, 713
Hpy188I	TCNGA	8 cut(s)	45, 196, 344, 598, 730, 849, 1056, 1346
Hpy188III	TCNNGA	7 cut(s)	286, 695, 827, 866, 898, 1085, 1254
Hpy8I	GTNNAC	3 cut(s)	214, 379, 713
Hpy99I	CGWCG	2 cut(s)	132, 1235
HpyCH4III	ACNGT	6 cut(s)	18, 56, 579, 683, 872, 1310
HpyCH4IV	ACGT	2 cut(s)	184, 1230
HpyF10VI	GCNNNNNNNGC	3 cut(s)	315, 618, 698
HpyF3I	CTNAG	5 cut(s)	140, 408, 1116, 1283, 1301
HpySE526I	ACGT	2 cut(s)	184, 1230
Hsp92I	GRCGYC	2 cut(s)	993, 1230
Hsp92II	CATG	5 cut(s)	391, 616, 1021, 1103, 1115
HspAI	GCGC	2 cut(s)	316, 966
Kpn2I	TCCGGA	1 cut(s)	865
Ksp22I	TGATCA	1 cut(s)	58
Kzo9I	GATC	6 cut(s)	58, 74, 421, 436, 838, 1119
LmnI	GCTCC	3 cut(s)	697, 868, 920
LweI	GCATC	1 cut(s)	489
MaeI	CTAG	2 cut(s)	915, 959
MaeII	ACGT	2 cut(s)	184, 1230
MaeIII	GTNAC	2 cut(s)	173, 1310
MalI	GATC	6 cut(s)	60, 76, 423, 438, 840, 1121
MboI	GATC	6 cut(s)	58, 74, 421, 436, 838, 1119
MflI	RGATCY	2 cut(s)	74, 436
MhlI	GDGCHC	2 cut(s)	403, 1284
MluCI	AATT	4 cut(s)	645, 799, 881, 1091
MlyI	GAGTC	1 cut(s)	650
MmeI	TCCRAC	2 cut(s)	102, 621
MroI	TCCGGA	1 cut(s)	865
MseI	TTAA	3 cut(s)	522, 644, 1200
MslI	CAYNNNNRTG	1 cut(s)	485
MspA1I	CMGCKG	6 cut(s)	313, 451, 976, 1027, 1300, 1317
MspI	CCGG	3 cut(s)	103, 516, 866
MspR9I	CCNGG	2 cut(s)	104, 517
Mva1269I	GAATGC	2 cut(s)	526, 1278
MvnI	CGCG	1 cut(s)	28
MwoI	GCNNNNNNNGC	3 cut(s)	315, 618, 698
NciI	CCSGG	2 cut(s)	104, 517
NcoI	CCATGG	1 cut(s)	1099
NdeII	GATC	6 cut(s)	58, 74, 421, 436, 838, 1119
NlaIII	CATG	5 cut(s)	391, 616, 1021, 1103, 1115
NlaIV	GGNNCC	2 cut(s)	400, 438
NmuCI	GTSAC	1 cut(s)	1310
NspI	RCATGY	3 cut(s)	391, 1021, 1115
NspV	TTCGAA	1 cut(s)	1002
PaeI	GCATGC	1 cut(s)	1021
PciI	ACATGT	1 cut(s)	387
PcsI	WCGNNNNNNNCGW	2 cut(s)	348, 999
PctI	GAATGC	2 cut(s)	526, 1278
PfeI	GAWTC	3 cut(s)	269, 345, 1347
PflFI	GACNNNGTC	1 cut(s)	995
PleI	GAGTC	1 cut(s)	650
PpsI	GAGTC	1 cut(s)	650
Ppu21I	YACGTR	1 cut(s)	185
PscI	ACATGT	1 cut(s)	387
PshBI	ATTAAT	1 cut(s)	644
PsiI	TTATAA	1 cut(s)	798
Psp124BI	GAGCTC	1 cut(s)	1284
PspN4I	GGNNCC	2 cut(s)	400, 438
PspPI	GGNCC	2 cut(s)	105, 620
PstI	CTGCAG	3 cut(s)	975, 981, 1026
PsuI	RGATCY	2 cut(s)	74, 436
PsyI	GACNNNGTC	1 cut(s)	995
PvuII	CAGCTG	6 cut(s)	313, 451, 976, 1027, 1300, 1317
RsaI	GTAC	6 cut(s)	215, 223, 413, 628, 676, 1296
RsaNI	GTAC	6 cut(s)	214, 222, 412, 627, 675, 1295
RseI	CAYNNNNRTG	1 cut(s)	485
SacI	GAGCTC	1 cut(s)	1284
SaqAI	TTAA	3 cut(s)	522, 644, 1200
Sau3AI	GATC	6 cut(s)	58, 74, 421, 436, 838, 1119
Sau96I	GGNCC	2 cut(s)	105, 620
SchI	GAGTC	1 cut(s)	650
ScrFI	CCNGG	2 cut(s)	104, 517
SduI	GDGCHC	2 cut(s)	403, 1284
SfaNI	GCATC	1 cut(s)	489
SfcI	CTRYAG	4 cut(s)	446, 971, 977, 1022
SfuI	TTCGAA	1 cut(s)	1002
SmiMI	CAYNNNNRTG	1 cut(s)	485
SnaBI	TACGTA	1 cut(s)	185
SphI	GCATGC	1 cut(s)	1021
Sse9I	AATT	4 cut(s)	645, 799, 881, 1091
SsiI	CCGC	4 cut(s)	82, 113, 918, 1289
SspI	AATATT	1 cut(s)	562
SspMI	CTAG	2 cut(s)	915, 959
SstI	GAGCTC	1 cut(s)	1284
StyD4I	CCNGG	2 cut(s)	102, 515
StyI	CCWWGG	1 cut(s)	1099
TaaI	ACNGT	6 cut(s)	18, 56, 579, 683, 872, 1310
TaiI	ACGT	2 cut(s)	187, 1233
TaqI	TCGA	4 cut(s)	429, 541, 635, 1002
TasI	AATT	4 cut(s)	645, 799, 881, 1091
TatI	WGTACW	1 cut(s)	213
TfiI	GAWTC	3 cut(s)	269, 345, 1347
Tru1I	TTAA	3 cut(s)	522, 644, 1200
Tru9I	TTAA	3 cut(s)	522, 644, 1200
TscAI	CASTG	3 cut(s)	810, 975, 1129
TseFI	GTSAC	1 cut(s)	1310
Tsp45I	GTSAC	1 cut(s)	1310
TspDTI	ATGAA	1 cut(s)	588
TspGWI	ACGGA	3 cut(s)	305, 649, 734
TspRI	CASTG	3 cut(s)	810, 975, 1129
Tth111I	GACNNNGTC	1 cut(s)	995
VspI	ATTAAT	1 cut(s)	644
XapI	RAATTY	1 cut(s)	881
XceI	RCATGY	3 cut(s)	391, 1021, 1115
XcmI	CCANNNNNNNNNTGG	1 cut(s)	565
XspI	CTAG	2 cut(s)	915, 959
ZraI	GACGTC	1 cut(s)	1231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.