Rh6AG136900

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0009726
Physical Location & Seq
Forward (+)
20821305 .. 20823514
2210 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG136900.1

Sequence Viewer

Length: 1131 bp
ATGGGGTTTCTTGCTTCTGGGACTGAAGTCTCGCGTTTCTTCTTTCCATGGAAGAAAACAAAACCCAAAAAGCTGCAAAACTGGCCATTCACCGAAGGAAAATGCATTCGATTTTCACTAAATGAGATCAGAACAGCGACCGACGACTTCAAGGAGTATCTCGGCAGCGGCGTCTTCTCCGACGTTTACAAAGGGCATATTATTAACGACGGAACCAGCATGGTTGTTGCAATCAAGCGCCTTATAAAAGATAATCAGATACAGCCAGAGTCTGCGTTCGACACGGAGATACTGTTGTTCTGCCAGTTGAGCCACCCTAACCTCGTTTCATTCATTGGATTTTGCGAAGAAGGAGATGACCGTATGCTAGTTTATGAGTTCCTTGATAATGGTCCCTTGTCTAATCATCTTTTCGGCAAGACCGCCGGAGATCCACTCTCCTGGAAGAAACGCTTGGATATCTGCATTGGGGCTGCGCGTGGTGTACATTACCTCCACACAGGGATGAAGCGTGCCATCATCCACAGAGACCTAAAAAGCTTTAACATTCTATTGGACAAGGACATGGTGCCCAAGCTTTCTGCCTTGGGGCTGGGCAAGTTGGGCGGCACTAATGTGAAAAATAAACTCAACAAAGCTTCATCAAGGAAGGCGGGTACACTAGGATATGCAGATCCGGAGTATCTGGAATCGGGAAACGTTACTCATAAATCTGATGTCTTTGCTTTTGGAGTGGTATTATTTGAAGTCTTGTGTGTTAGAAGTGTAGCAGAGTTTATAGAATGCATGGATGGGCGGACTTTACTCTTTGATATCATTGATCCATACTTGAAGGGCAAAATAGCTCCGGACTGTTTGAGAAAATTTGTGGATATTGCCGAGAGATGTGTGCGTCGAATGGGAGCCCAACGACCAACGATAGGTGAAGTGGAGGTAGAACTTGAGGATGCATTGGAGCTGCAGGAAAAGTCGGATTCCAGCAAAAACTTGGAGACAAGCACTTCTATTTCTCCTGCCCATCAGGACTATACCTACGACGGGATGACATTTCGGACCATCAAGGATATTTTTTTCTGGTTAGAGAAAGGCGCCCTTACAAATTTAATATCTACTAATTCTCACTTAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169
Pfam Domains
Protein Families
Pkinase_Tyr

Protein Analysis

376

Amino Acids

42.28

Weight (kDa)

6.76

Isoelectric Point (pI)

31.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 50 - 312 6.3e-43 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 51 - 310 6.6e-37 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 245
AccB1I GGYRCC 2 cut(s) 568, 1088
AccII CGCG 2 cut(s) 34, 478
AccIII TCCGGA 2 cut(s) 676, 847
AciI CCGC 5 cut(s) 168, 423, 606, 653, 796
AclI AACGTT 1 cut(s) 699
AclWI GGATC 3 cut(s) 425, 668, 815
AcoI YGGCCR 1 cut(s) 83
AcsI RAATTY 2 cut(s) 863, 1099
AcuI CTGAAG 1 cut(s) 45
AcyI GRCGYC 2 cut(s) 171, 1089
AfaI GTAC 2 cut(s) 486, 658
AfiI CCNNNNNNNGG 2 cut(s) 920, 1038
AgsI TTSAA 3 cut(s) 151, 746, 832
AjnI CCWGG 1 cut(s) 440
AjuI GAANNNNNNNTTGG 2 cut(s) 437, 469
AleI CACNNNNGTG 1 cut(s) 614
AluBI AGCT 6 cut(s) 73, 540, 577, 638, 845, 958
AluI AGCT 6 cut(s) 73, 540, 577, 638, 845, 958
Alw26I GTCTC 3 cut(s) 34, 522, 986
AlwI GGATC 3 cut(s) 425, 668, 815
AlwNI CAGNNNCTG 1 cut(s) 272
Aor13HI TCCGGA 2 cut(s) 676, 847
AoxI GGCC 1 cut(s) 83
ApeKI GCWGC 4 cut(s) 73, 165, 473, 958
ApoI RAATTY 2 cut(s) 863, 1099
AspLEI GCGC 3 cut(s) 240, 478, 1091
AspS9I GGNCC 2 cut(s) 392, 1053
AsuHPI GGTGA 2 cut(s) 82, 935
AvaII GGWCC 2 cut(s) 392, 1053
BaeGI GKGCMC 1 cut(s) 573
BaeI ACNNNNGTAYC 2 cut(s) 281, 314
BalI TGGCCA 1 cut(s) 85
BanI GGYRCC 2 cut(s) 568, 1088
BanII GRGCYC 1 cut(s) 907
BbsI GAAGAC 1 cut(s) 166
BbvI GCAGC 4 cut(s) 60, 177, 460, 945
BccI CCATC 4 cut(s) 524, 785, 1026, 1064
BciT130I CCWGG 1 cut(s) 442
BcoDI GTCTC 3 cut(s) 34, 522, 986
BfaI CTAG 2 cut(s) 368, 662
BfmI CTRYAG 1 cut(s) 959
BfoI RGCGCY 2 cut(s) 241, 1092
BisI GCNGC 6 cut(s) 74, 166, 169, 474, 607, 959
BlsI GCNGC 6 cut(s) 75, 167, 170, 475, 608, 960
Bme1390I CCNGG 1 cut(s) 442
Bme18I GGWCC 2 cut(s) 392, 1053
BmgT120I GGNCC 2 cut(s) 392, 1053
BmiI GGNNCC 5 cut(s) 214, 394, 570, 904, 1090
BmrFI CCNGG 1 cut(s) 442
BmsI GCATC 1 cut(s) 937
BoxI GACNNNNGTC 1 cut(s) 26
BpiI GAAGAC 1 cut(s) 166
BplI GAGNNNNNCTC 2 cut(s) 420, 452
BpuEI CTTGAG 1 cut(s) 962
BsaHI GRCGYC 2 cut(s) 171, 1089
BsaI GGTCTC 1 cut(s) 522
BsaJI CCNNGG 2 cut(s) 47, 585
BsaWI WCCGGW 2 cut(s) 676, 847
BsaXI ACNNNNNCTCC 4 cut(s) 278, 308, 477, 507
Bsc4I CCNNNNNNNGG 2 cut(s) 920, 1038
Bse1I ACTGG 2 cut(s) 86, 304
BseAI TCCGGA 2 cut(s) 676, 847
BseBI CCWGG 1 cut(s) 442
BseDI CCNNGG 2 cut(s) 47, 585
BseGI GGATG 5 cut(s) 510, 519, 796, 952, 1047
BseLI CCNNNNNNNGG 2 cut(s) 920, 1038
BseNI ACTGG 2 cut(s) 86, 304
BseSI GKGCMC 1 cut(s) 573
BseXI GCAGC 4 cut(s) 60, 177, 460, 945
BseYI CCCAGC 1 cut(s) 592
Bsh1236I CGCG 2 cut(s) 34, 478
Bsh1285I CGRYCG 1 cut(s) 141
BshFI GGCC 1 cut(s) 85
BshNI GGYRCC 2 cut(s) 568, 1088
BsiEI CGRYCG 1 cut(s) 141
BsiSI CCGG 3 cut(s) 426, 677, 848
BslFI GGGAC 2 cut(s) 34, 378
BslI CCNNNNNNNGG 2 cut(s) 920, 1038
BsmAI GTCTC 3 cut(s) 34, 522, 986
BsmFI GGGAC 2 cut(s) 34, 378
BsmI GAATGC 2 cut(s) 105, 788
BsnI GGCC 1 cut(s) 85
Bso31I GGTCTC 1 cut(s) 522
Bsp1286I GDGCHC 2 cut(s) 573, 907
Bsp13I TCCGGA 2 cut(s) 676, 847
Bsp1407I TGTACA 1 cut(s) 484
Bsp143I GATC 4 cut(s) 126, 430, 673, 820
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 5 cut(s) 168, 423, 606, 653, 796
BspANI GGCC 1 cut(s) 85
BspEI TCCGGA 2 cut(s) 676, 847
BspFNI CGCG 2 cut(s) 34, 478
BspLI GGNNCC 5 cut(s) 214, 394, 570, 904, 1090
BspMAI CTGCAG 1 cut(s) 963
BspPI GGATC 3 cut(s) 425, 668, 815
BspT107I GGYRCC 2 cut(s) 568, 1088
BspTNI GGTCTC 1 cut(s) 522
BsrGI TGTACA 1 cut(s) 484
BsrI ACTGG 2 cut(s) 86, 304
BssECI CCNNGG 2 cut(s) 47, 585
BssMI GATC 4 cut(s) 126, 430, 673, 820
BssNI GRCGYC 2 cut(s) 171, 1089
BssT1I CCWWGG 2 cut(s) 47, 585
Bst2UI CCWGG 1 cut(s) 442
Bst4CI ACNGT 3 cut(s) 294, 362, 854
BstACI GRCGYC 2 cut(s) 171, 1089
BstAUI TGTACA 1 cut(s) 484
BstC8I GCNNGC 1 cut(s) 513
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 5 cut(s) 510, 519, 796, 952, 1047
BstFNI CGCG 2 cut(s) 34, 478
BstH2I RGCGCY 2 cut(s) 241, 1092
BstHHI GCGC 3 cut(s) 240, 478, 1091
BstKTI GATC 4 cut(s) 129, 433, 676, 823
BstMAI GTCTC 3 cut(s) 34, 522, 986
BstMBI GATC 4 cut(s) 126, 430, 673, 820
BstMCI CGRYCG 1 cut(s) 141
BstMWI GCNNNNNNNGC 3 cut(s) 82, 309, 603
BstNI CCWGG 1 cut(s) 442
BstPAI GACNNNNGTC 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 440
BstSFI CTRYAG 1 cut(s) 959
BstSLI GKGCMC 1 cut(s) 573
BstUI CGCG 2 cut(s) 34, 478
BstV1I GCAGC 4 cut(s) 60, 177, 460, 945
BstV2I GAAGAC 1 cut(s) 166
BstX2I RGATCY 2 cut(s) 430, 673
BstXI CCANNNNNNTGG 1 cut(s) 441
BstYI RGATCY 2 cut(s) 430, 673
BsuRI GGCC 1 cut(s) 85
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 5 cut(s) 510, 519, 796, 952, 1047
Cac8I GCNNGC 1 cut(s) 513
CaiI CAGNNNCTG 1 cut(s) 272
CfoI GCGC 3 cut(s) 240, 478, 1091
Cfr13I GGNCC 2 cut(s) 392, 1053
CseI GACGC 2 cut(s) 160, 881
Csp6I GTAC 2 cut(s) 485, 657
CviAII CATG 4 cut(s) 48, 220, 565, 787
CviQI GTAC 2 cut(s) 485, 657
DinI GGCGCC 1 cut(s) 1090
DpnI GATC 4 cut(s) 128, 432, 675, 822
DpnII GATC 4 cut(s) 126, 430, 673, 820
EaeI YGGCCR 1 cut(s) 83
EciI GGCGGA 1 cut(s) 811
Eco130I CCWWGG 2 cut(s) 47, 585
Eco24I GRGCYC 1 cut(s) 907
Eco31I GGTCTC 1 cut(s) 522
Eco32I GATATC 2 cut(s) 460, 814
Eco47I GGWCC 2 cut(s) 392, 1053
Eco57I CTGAAG 1 cut(s) 45
EcoRII CCWGG 1 cut(s) 440
EcoRV GATATC 2 cut(s) 460, 814
EcoT14I CCWWGG 2 cut(s) 47, 585
EcoT22I ATGCAT 3 cut(s) 107, 788, 952
EcoT38I GRGCYC 1 cut(s) 907
EgeI GGCGCC 1 cut(s) 1090
EheI GGCGCC 1 cut(s) 1090
ErhI CCWWGG 2 cut(s) 47, 585
FaeI CATG 4 cut(s) 51, 223, 568, 790
FalI AAGNNNNNCTT 4 cut(s) 437, 469, 1077, 1109
FaqI GGGAC 2 cut(s) 34, 378
FatI CATG 4 cut(s) 47, 219, 564, 786
FauI CCCGC 1 cut(s) 646
Fnu4HI GCNGC 6 cut(s) 74, 166, 169, 474, 607, 959
FokI GGATG 5 cut(s) 506, 517, 803, 959, 1054
FriOI GRGCYC 1 cut(s) 907
Fsp4HI GCNGC 6 cut(s) 74, 166, 169, 474, 607, 959
FspBI CTAG 2 cut(s) 368, 662
GlaI GCGC 3 cut(s) 239, 477, 1090
GluI GCNGC 6 cut(s) 74, 166, 169, 474, 607, 959
GsaI CCCAGC 1 cut(s) 596
HaeII RGCGCY 2 cut(s) 241, 1092
HaeIII GGCC 1 cut(s) 85
HapII CCGG 3 cut(s) 426, 677, 848
HgaI GACGC 2 cut(s) 160, 881
HhaI GCGC 3 cut(s) 240, 478, 1091
Hin1I GRCGYC 2 cut(s) 171, 1089
Hin1II CATG 4 cut(s) 51, 223, 568, 790
Hin6I GCGC 3 cut(s) 238, 476, 1089
HinP1I GCGC 3 cut(s) 238, 476, 1089
HindIII AAGCTT 3 cut(s) 538, 575, 636
HinfI GANTC 3 cut(s) 269, 689, 974
HpaII CCGG 3 cut(s) 426, 677, 848
HphI GGTGA 2 cut(s) 82, 935
Hpy166II GTNNAC 3 cut(s) 187, 485, 659
Hpy188I TCNGA 6 cut(s) 131, 181, 258, 715, 973, 1053
Hpy188III TCNNGA 5 cut(s) 677, 686, 693, 848, 1022
Hpy8I GTNNAC 3 cut(s) 187, 485, 659
Hpy99I CGWCG 5 cut(s) 146, 185, 212, 897, 1040
HpyAV CCTTC 4 cut(s) 89, 344, 643, 826
HpyCH4III ACNGT 3 cut(s) 294, 362, 854
HpyCH4IV ACGT 2 cut(s) 183, 699
HpyCH4V TGCA 8 cut(s) 76, 105, 230, 465, 671, 786, 950, 961
HpyF10VI GCNNNNNNNGC 3 cut(s) 82, 309, 603
HpySE526I ACGT 2 cut(s) 183, 699
Hsp92I GRCGYC 2 cut(s) 171, 1089
Hsp92II CATG 4 cut(s) 51, 223, 568, 790
HspAI GCGC 3 cut(s) 238, 476, 1089
KasI GGCGCC 1 cut(s) 1088
Kpn2I TCCGGA 2 cut(s) 676, 847
Kzo9I GATC 4 cut(s) 126, 430, 673, 820
LmnI GCTCC 3 cut(s) 850, 902, 955
Lsp1109I GCAGC 4 cut(s) 60, 177, 460, 945
LweI GCATC 1 cut(s) 937
MaeI CTAG 2 cut(s) 368, 662
MaeII ACGT 2 cut(s) 183, 699
MaeIII GTNAC 1 cut(s) 700
MalI GATC 4 cut(s) 128, 432, 675, 822
MboI GATC 4 cut(s) 126, 430, 673, 820
MboII GAAGA 5 cut(s) 31, 64, 166, 359, 457
MflI RGATCY 2 cut(s) 430, 673
MhlI GDGCHC 2 cut(s) 573, 907
MlsI TGGCCA 1 cut(s) 85
MluCI AATT 3 cut(s) 863, 1099, 1114
MluNI TGGCCA 1 cut(s) 85
Mly113I GGCGCC 1 cut(s) 1089
MlyI GAGTC 1 cut(s) 278
MmeI TCCRAC 2 cut(s) 204, 951
MnlI CCTC 4 cut(s) 332, 503, 925, 937
Mox20I TGGCCA 1 cut(s) 85
Mph1103I ATGCAT 3 cut(s) 107, 788, 952
MroI TCCGGA 2 cut(s) 676, 847
MscI TGGCCA 1 cut(s) 85
MseI TTAA 4 cut(s) 204, 543, 1103, 1124
MslI CAYNNNNRTG 2 cut(s) 503, 614
Msp20I TGGCCA 1 cut(s) 85
MspA1I CMGCKG 1 cut(s) 168
MspI CCGG 3 cut(s) 426, 677, 848
MspR9I CCNGG 1 cut(s) 442
Mva1269I GAATGC 2 cut(s) 105, 788
MvaI CCWGG 1 cut(s) 442
MvnI CGCG 2 cut(s) 34, 478
MwoI GCNNNNNNNGC 3 cut(s) 82, 309, 603
NarI GGCGCC 1 cut(s) 1089
NcoI CCATGG 1 cut(s) 47
NdeII GATC 4 cut(s) 126, 430, 673, 820
NlaIII CATG 4 cut(s) 51, 223, 568, 790
NlaIV GGNNCC 5 cut(s) 214, 394, 570, 904, 1090
NmeAIII GCCGAG 2 cut(s) 141, 904
NsiI ATGCAT 3 cut(s) 107, 788, 952
OliI CACNNNNGTG 1 cut(s) 614
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PctI GAATGC 2 cut(s) 105, 788
PfeI GAWTC 2 cut(s) 689, 974
PfoI TCCNGGA 1 cut(s) 440
PkrI GCNGC 6 cut(s) 75, 167, 170, 475, 608, 960
PleI GAGTC 1 cut(s) 277
PluTI GGCGCC 1 cut(s) 1092
PpsI GAGTC 1 cut(s) 277
PshAI GACNNNNGTC 1 cut(s) 26
PsiI TTATAA 1 cut(s) 245
Psp1406I AACGTT 1 cut(s) 699
Psp6I CCWGG 1 cut(s) 440
PspFI CCCAGC 1 cut(s) 592
PspGI CCWGG 1 cut(s) 440
PspN4I GGNNCC 5 cut(s) 214, 394, 570, 904, 1090
PspPI GGNCC 2 cut(s) 392, 1053
PstI CTGCAG 1 cut(s) 963
PstNI CAGNNNCTG 1 cut(s) 272
PsuI RGATCY 2 cut(s) 430, 673
RsaI GTAC 2 cut(s) 486, 658
RsaNI GTAC 2 cut(s) 485, 657
RseI CAYNNNNRTG 2 cut(s) 503, 614
SaqAI TTAA 4 cut(s) 204, 543, 1103, 1124
SatI GCNGC 6 cut(s) 74, 166, 169, 474, 607, 959
Sau3AI GATC 4 cut(s) 126, 430, 673, 820
Sau96I GGNCC 2 cut(s) 392, 1053
SchI GAGTC 1 cut(s) 278
ScrFI CCNGG 1 cut(s) 442
SduI GDGCHC 2 cut(s) 573, 907
SfaNI GCATC 1 cut(s) 937
SfcI CTRYAG 1 cut(s) 959
SfoI GGCGCC 1 cut(s) 1090
SinI GGWCC 2 cut(s) 392, 1053
SmiMI CAYNNNNRTG 2 cut(s) 503, 614
SmlI CTYRAG 1 cut(s) 941
SmoI CTYRAG 1 cut(s) 941
Sse9I AATT 3 cut(s) 863, 1099, 1114
SsiI CCGC 5 cut(s) 168, 423, 606, 653, 796
SspDI GGCGCC 1 cut(s) 1088
SspMI CTAG 2 cut(s) 368, 662
StyD4I CCNGG 1 cut(s) 440
StyI CCWWGG 2 cut(s) 47, 585
TaaI ACNGT 3 cut(s) 294, 362, 854
TaiI ACGT 2 cut(s) 186, 702
TaqI TCGA 3 cut(s) 109, 279, 895
TaqII GACCGA 1 cut(s) 155
TasI AATT 3 cut(s) 863, 1099, 1114
TatI WGTACW 1 cut(s) 484
TauI GCSGC 2 cut(s) 171, 609
TfiI GAWTC 2 cut(s) 689, 974
Tru1I TTAA 4 cut(s) 204, 543, 1103, 1124
Tru9I TTAA 4 cut(s) 204, 543, 1103, 1124
TseI GCWGC 4 cut(s) 73, 165, 473, 958
TspDTI ATGAA 4 cut(s) 318, 322, 521, 630
TspGWI ACGGA 2 cut(s) 225, 299
VpaK11BI GGWCC 2 cut(s) 392, 1053
XapI RAATTY 2 cut(s) 863, 1099
XcmI CCANNNNNNNNNTGG 1 cut(s) 985
XspI CTAG 2 cut(s) 368, 662
Zsp2I ATGCAT 3 cut(s) 107, 788, 952
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.