Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0009726

Physical Location & Seq

Genomic Coordinates Forward (+)

32410076 .. 32411275

Gene Structure 1200 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1256400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGGGCGTACTGCGCAGTCTGTCTCTCGTTTCTTCTCTCTTCGGAAGAAGAAACAAAATGATTGGGCGTTTCCTGAAGAATTATGCCGTCGTTTTACACTTGCTGAGATCAGAGCAGCAACTCAATGTTTCGACCGAACCTTAGTTATTGGTGAGGGTGGCTTTGGCAGAGTATACAAAGGGCGTATTAAGGTCGATGGGGATGAGGACAGGATAGACGTCGTTGCAATCAAGCGCCTTTCCAGAGATTCAGTACAGGGAGTGCCTGCGTTCAGGGCGGAGGTACAGCTACTGTGCCAGCTGCGCCACCCCAACCTCATCTCTCTCGTCGGATTCTGCCAAGAAAATGGAGAGCGTATCATTGTCTACGACTACATGCCCAACGGTACCCTCTCTGATTACCTCCTTGATCCTTCCAATATTAAAAATAAAGATCCTTTTCCCTTGACTTGGAAGCAAAGGCTGAAAATTTGTATTGGGGTAGCGCGTTCAATACACTACCTCCACGCAGGGGTTAAGCATGCTGTCATCCATCGAGCTGTGAAATGCTCCAGCGTTCTATTGGACCAAAACTTGGTGCCCAAGCTTTCTGACTTCGGGTTGTCCAAGATGGGTCCTCCTGTCTTGTCAAATGCATTAATCAAATTAACCTCGCGGATCTTTGGTACAATAGGCTATCTTGCTCCAGAGTATGCAATGTTCGGACAACTTACCGAAAAATCTGATGTCTATTCATTTGGAATGGTGTTACTTGAAGTGTTGTGTGCCAAATCTGTTTCAAGAGAGATATTTGAATGTGTGGAAAGGGGTGAGACTTTCCCTGCTATAATTGATCCTTTTCTGATTGGAAAAGTAGCTCCAGATTGTTTGAGAAAATTTATGATCATCGCCATGAGATGTGGGCGCCCTGCAGGAGCTGAACGGCCCACGATGGGTGAAGTGCAGGTGGAACTTGAGTGCGCACTGGAGTTGCAGGAGAGGGCTGACACCGTCAAGCAGCTCAATGAGTTGAGGACAAGTGCAAGTACTTCTCTTGCTCCTCTTCCTGCCCATGACATGGAGGACTATACCTACCAAAATATATCATTTTCTGAGATCAATGAAATCATCTGTAATAGGTATAGGAATTCGCGAGATTCTTTTAGCACTGATGAGGCAGCTTCTGTTGATGGCATTGCCAGCCTTGATCAAGCATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

400

Amino Acids

44.69

Weight (kDa)

7.49

Isoelectric Point (pI)

40.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	49 - 317	2.3e-42	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	49 - 261	9.1e-34	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009726)

Species	Orthologous Gene IDs
malus_domestica	MD04G1237900.v1.1 MD04G1238200.v1.1 MD04G1238300.v1.1 MD04G1238400.v1.1 MD12G1256100.v1.1 MD12G1256200.v1.1 MD12G1256400.v1.1 MD12G1256500.v1.1
pyrus_communis	pycom02g03710 pycom04g21120 pycom04g21130 pycom12g23490 pycom12g23510 pycom17g22130
rosa_chinensis	RchiOBHm_Chr0c37g0502971 RchiOBHm_Chr6g0265111 RchiOBHm_Chr6g0265191
rosa_multiflora	Rmu_co8298979.1_g000001 Rmu_ssc0000359.1_g000070
rosa_samantha	Rh6AG136900 Rh6BG133800
rosa_wichuraiana	Rw6G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1198
AarI	CACCTGC	1 cut(s)	934
AatII	GACGTC	1 cut(s)	222
Acc16I	TGCGCA	2 cut(s)	15, 961
Acc36I	ACCTGC	1 cut(s)	934
Acc65I	GGTACC	1 cut(s)	386
AccB1I	GGYRCC	3 cut(s)	386, 577, 903
AccB7I	CCANNNNNTGG	2 cut(s)	574, 1057
AccI	GTMKAC	2 cut(s)	174, 366
AccII	CGCG	3 cut(s)	487, 655, 1132
AciI	CCGC	2 cut(s)	278, 655
AclWI	GGATC	4 cut(s)	404, 428, 665, 827
AcsI	RAATTY	3 cut(s)	468, 875, 1126
AcuI	CTGAAG	1 cut(s)	96
AcyI	GRCGYC	2 cut(s)	219, 904
AfaI	GTAC	6 cut(s)	10, 255, 285, 388, 667, 1027
AfiI	CCNNNNNNNGG	5 cut(s)	450, 511, 574, 932, 1057
AgsI	TTSAA	4 cut(s)	492, 755, 780, 794
AluBI	AGCT	8 cut(s)	289, 301, 539, 586, 857, 917, 1000, 1160
AluI	AGCT	8 cut(s)	289, 301, 539, 586, 857, 917, 1000, 1160
Alw26I	GTCTC	2 cut(s)	28, 806
AlwI	GGATC	4 cut(s)	404, 428, 665, 827
AlwNI	CAGNNNCTG	3 cut(s)	292, 917, 1163
AoxI	GGCC	1 cut(s)	923
ApeKI	GCWGC	4 cut(s)	116, 301, 997, 1157
ApoI	RAATTY	3 cut(s)	468, 875, 1126
AseI	ATTAAT	1 cut(s)	638
Asp718I	GGTACC	1 cut(s)	386
AspLEI	GCGC	6 cut(s)	16, 237, 306, 487, 906, 962
AspS9I	GGNCC	3 cut(s)	565, 614, 924
AsuHPI	GGTGA	3 cut(s)	164, 821, 947
AvaII	GGWCC	2 cut(s)	565, 614
BaeGI	GKGCMC	1 cut(s)	582
BanI	GGYRCC	3 cut(s)	386, 577, 903
BbvI	GCAGC	4 cut(s)	128, 288, 1009, 1169
BccI	CCATC	5 cut(s)	191, 540, 604, 925, 1163
BceAI	ACGGC	2 cut(s)	72, 938
BclI	TGATCA	2 cut(s)	882, 1186
BcoDI	GTCTC	2 cut(s)	28, 806
BfmI	CTRYAG	1 cut(s)	909
BfoI	RGCGCY	2 cut(s)	238, 907
BfuAI	ACCTGC	1 cut(s)	934
BisI	GCNGC	4 cut(s)	117, 302, 998, 1158
BlsI	GCNGC	4 cut(s)	118, 303, 999, 1159
BmcAI	AGTACT	1 cut(s)	1027
Bme18I	GGWCC	2 cut(s)	565, 614
BmgT120I	GGNCC	3 cut(s)	565, 614, 924
BmiI	GGNNCC	4 cut(s)	388, 579, 615, 905
BpmI	CTGGAG	4 cut(s)	535, 669, 843, 986
BpuEI	CTTGAG	1 cut(s)	974
BsaHI	GRCGYC	2 cut(s)	219, 904
BsaXI	ACNNNNNCTCC	2 cut(s)	486, 516
Bsc4I	CCNNNNNNNGG	5 cut(s)	450, 511, 574, 932, 1057
Bse1I	ACTGG	1 cut(s)	969
Bse3DI	GCAATG	2 cut(s)	702, 1173
BseGI	GGATG	2 cut(s)	208, 528
BseLI	CCNNNNNNNGG	5 cut(s)	450, 511, 574, 932, 1057
BseMI	GCAATG	2 cut(s)	702, 1173
BseMII	CTCAG	2 cut(s)	96, 1083
BseNI	ACTGG	1 cut(s)	969
BseRI	GAGGAG	1 cut(s)	1029
BseSI	GKGCMC	1 cut(s)	582
BseXI	GCAGC	4 cut(s)	128, 288, 1009, 1169
BsgI	GTGCAG	1 cut(s)	962
Bsh1236I	CGCG	3 cut(s)	487, 655, 1132
Bsh1285I	CGRYCG	1 cut(s)	136
BshFI	GGCC	1 cut(s)	925
BshNI	GGYRCC	3 cut(s)	386, 577, 903
BsiEI	CGRYCG	1 cut(s)	136
BslI	CCNNNNNNNGG	5 cut(s)	450, 511, 574, 932, 1057
BsmAI	GTCTC	2 cut(s)	28, 806
BsnI	GGCC	1 cut(s)	925
Bsp1286I	GDGCHC	1 cut(s)	582
Bsp143I	GATC	8 cut(s)	108, 409, 433, 657, 832, 882, 1095, 1186
Bsp68I	TCGCGA	1 cut(s)	1132
BspACI	CCGC	2 cut(s)	278, 655
BspANI	GGCC	1 cut(s)	925
BspCNI	CTCAG	2 cut(s)	97, 1084
BspFNI	CGCG	3 cut(s)	487, 655, 1132
BspLI	GGNNCC	4 cut(s)	388, 579, 615, 905
BspMAI	CTGCAG	1 cut(s)	913
BspMI	ACCTGC	1 cut(s)	934
BspPI	GGATC	4 cut(s)	404, 428, 665, 827
BspT107I	GGYRCC	3 cut(s)	386, 577, 903
BsrDI	GCAATG	2 cut(s)	702, 1173
BsrI	ACTGG	1 cut(s)	969
BssMI	GATC	8 cut(s)	108, 409, 433, 657, 832, 882, 1095, 1186
BssNAI	GTATAC	1 cut(s)	175
BssNI	GRCGYC	2 cut(s)	219, 904
Bst1107I	GTATAC	1 cut(s)	175
Bst4CI	ACNGT	3 cut(s)	294, 386, 991
Bst6I	CTCTTC	2 cut(s)	45, 1047
BstACI	GRCGYC	2 cut(s)	219, 904
BstC8I	GCNNGC	4 cut(s)	267, 299, 522, 1180
BstDEI	CTNAG	3 cut(s)	105, 142, 1092
BstF5I	GGATG	2 cut(s)	208, 528
BstFNI	CGCG	3 cut(s)	487, 655, 1132
BstH2I	RGCGCY	2 cut(s)	238, 907
BstHHI	GCGC	6 cut(s)	16, 237, 306, 487, 906, 962
BstKTI	GATC	8 cut(s)	111, 412, 436, 660, 835, 885, 1098, 1189
BstMAI	GTCTC	2 cut(s)	28, 806
BstMBI	GATC	8 cut(s)	108, 409, 433, 657, 832, 882, 1095, 1186
BstMCI	CGRYCG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 275, 303, 1179
BstNSI	RCATGY	2 cut(s)	379, 524
BstSFI	CTRYAG	1 cut(s)	909
BstSLI	GKGCMC	1 cut(s)	582
BstUI	CGCG	3 cut(s)	487, 655, 1132
BstV1I	GCAGC	4 cut(s)	128, 288, 1009, 1169
BstX2I	RGATCY	2 cut(s)	433, 657
BstXI	CCANNNNNNTGG	1 cut(s)	347
BstYI	RGATCY	2 cut(s)	433, 657
BstZ17I	GTATAC	1 cut(s)	175
BsuRI	GGCC	1 cut(s)	925
BtgZI	GCGATG	1 cut(s)	871
BtsCI	GGATG	2 cut(s)	208, 528
BtsIMutI	CAGTG	2 cut(s)	962, 1146
BtuMI	TCGCGA	1 cut(s)	1132
BveI	ACCTGC	1 cut(s)	934
Cac8I	GCNNGC	4 cut(s)	267, 299, 522, 1180
CaiI	CAGNNNCTG	3 cut(s)	292, 917, 1163
CfoI	GCGC	6 cut(s)	16, 237, 306, 487, 906, 962
Cfr13I	GGNCC	3 cut(s)	565, 614, 924
Csp6I	GTAC	6 cut(s)	9, 254, 284, 387, 666, 1026
CviAII	CATG	5 cut(s)	376, 521, 892, 1052, 1057
CviQI	GTAC	6 cut(s)	9, 254, 284, 387, 666, 1026
DdeI	CTNAG	3 cut(s)	105, 142, 1092
DinI	GGCGCC	1 cut(s)	905
DpnI	GATC	8 cut(s)	110, 411, 435, 659, 834, 884, 1097, 1188
DpnII	GATC	8 cut(s)	108, 409, 433, 657, 832, 882, 1095, 1186
Eam1104I	CTCTTC	2 cut(s)	45, 1047
EarI	CTCTTC	2 cut(s)	45, 1047
EciI	GGCGGA	1 cut(s)	293
Eco47I	GGWCC	2 cut(s)	565, 614
Eco57I	CTGAAG	1 cut(s)	96
EcoO109I	RGGNCCY	1 cut(s)	614
EcoRI	GAATTC	1 cut(s)	1126
EcoT22I	ATGCAT	1 cut(s)	637
EgeI	GGCGCC	1 cut(s)	905
EheI	GGCGCC	1 cut(s)	905
FaeI	CATG	5 cut(s)	379, 524, 895, 1055, 1060
FatI	CATG	5 cut(s)	375, 520, 891, 1051, 1056
FbaI	TGATCA	2 cut(s)	882, 1186
FblI	GTMKAC	2 cut(s)	174, 366
Fnu4HI	GCNGC	4 cut(s)	117, 302, 998, 1158
FokI	GGATG	2 cut(s)	215, 515
Fsp4HI	GCNGC	4 cut(s)	117, 302, 998, 1158
FspAI	RTGCGCAY	1 cut(s)	961
FspI	TGCGCA	2 cut(s)	15, 961
GlaI	GCGC	6 cut(s)	15, 236, 305, 486, 905, 961
GluI	GCNGC	4 cut(s)	117, 302, 998, 1158
GsuI	CTGGAG	4 cut(s)	535, 669, 843, 986
HaeII	RGCGCY	2 cut(s)	238, 907
HaeIII	GGCC	1 cut(s)	925
HhaI	GCGC	6 cut(s)	16, 237, 306, 487, 906, 962
Hin1I	GRCGYC	2 cut(s)	219, 904
Hin1II	CATG	5 cut(s)	379, 524, 895, 1055, 1060
Hin6I	GCGC	6 cut(s)	14, 235, 304, 485, 904, 960
HinP1I	GCGC	6 cut(s)	14, 235, 304, 485, 904, 960
HindIII	AAGCTT	1 cut(s)	584
HinfI	GANTC	3 cut(s)	248, 333, 1136
HphI	GGTGA	3 cut(s)	164, 821, 947
Hpy166II	GTNNAC	2 cut(s)	175, 367
Hpy188I	TCNGA	9 cut(s)	45, 113, 332, 397, 592, 704, 724, 843, 1093
Hpy188III	TCNNGA	6 cut(s)	74, 243, 686, 780, 860, 1131
Hpy8I	GTNNAC	2 cut(s)	175, 367
Hpy99I	CGWCG	3 cut(s)	93, 224, 332
HpyAV	CCTTC	1 cut(s)	423
HpyCH4III	ACNGT	3 cut(s)	294, 386, 991
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	7 cut(s)	227, 635, 695, 911, 943, 973, 1022
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 275, 303, 1179
HpyF3I	CTNAG	3 cut(s)	105, 142, 1092
HpySE526I	ACGT	1 cut(s)	219
Hsp92I	GRCGYC	2 cut(s)	219, 904
Hsp92II	CATG	5 cut(s)	379, 524, 895, 1055, 1060
HspAI	GCGC	6 cut(s)	14, 235, 304, 485, 904, 960
KasI	GGCGCC	1 cut(s)	903
KpnI	GGTACC	1 cut(s)	390
Ksp22I	TGATCA	2 cut(s)	882, 1186
Kzo9I	GATC	8 cut(s)	108, 409, 433, 657, 832, 882, 1095, 1186
LmnI	GCTCC	5 cut(s)	554, 688, 862, 914, 1042
Lsp1109I	GCAGC	4 cut(s)	128, 288, 1009, 1169
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	1 cut(s)	747
MalI	GATC	8 cut(s)	110, 411, 435, 659, 834, 884, 1097, 1188
MboI	GATC	8 cut(s)	108, 409, 433, 657, 832, 882, 1095, 1186
MboII	GAAGA	6 cut(s)	25, 32, 58, 61, 89, 1034
MflI	RGATCY	2 cut(s)	433, 657
MhlI	GDGCHC	1 cut(s)	582
MluCI	AATT	6 cut(s)	80, 468, 644, 828, 875, 1126
Mly113I	GGCGCC	1 cut(s)	904
MmeI	TCCRAC	1 cut(s)	310
Mph1103I	ATGCAT	1 cut(s)	637
MseI	TTAA	5 cut(s)	189, 423, 516, 638, 647
MslI	CAYNNNNRTG	1 cut(s)	890
MspA1I	CMGCKG	1 cut(s)	301
MvnI	CGCG	3 cut(s)	487, 655, 1132
MwoI	GCNNNNNNNGC	4 cut(s)	13, 275, 303, 1179
NarI	GGCGCC	1 cut(s)	904
NdeII	GATC	8 cut(s)	108, 409, 433, 657, 832, 882, 1095, 1186
NlaIII	CATG	5 cut(s)	379, 524, 895, 1055, 1060
NlaIV	GGNNCC	4 cut(s)	388, 579, 615, 905
NruI	TCGCGA	1 cut(s)	1132
NsbI	TGCGCA	2 cut(s)	15, 961
NsiI	ATGCAT	1 cut(s)	637
NspI	RCATGY	2 cut(s)	379, 524
PaeI	GCATGC	1 cut(s)	524
PaqCI	CACCTGC	1 cut(s)	934
PfeI	GAWTC	3 cut(s)	248, 333, 1136
PflFI	GACNNNGTC	1 cut(s)	989
PflMI	CCANNNNNTGG	2 cut(s)	574, 1057
PkrI	GCNGC	4 cut(s)	118, 303, 999, 1159
PluTI	GGCGCC	1 cut(s)	907
PpuMI	RGGWCCY	1 cut(s)	614
PshBI	ATTAAT	1 cut(s)	638
PsiI	TTATAA	1 cut(s)	1198
Psp5II	RGGWCCY	1 cut(s)	614
PspN4I	GGNNCC	4 cut(s)	388, 579, 615, 905
PspPI	GGNCC	3 cut(s)	565, 614, 924
PspPPI	RGGWCCY	1 cut(s)	614
PsrI	GAACNNNNNNTAC	2 cut(s)	683, 715
PstI	CTGCAG	1 cut(s)	913
PstNI	CAGNNNCTG	3 cut(s)	292, 917, 1163
PsuI	RGATCY	2 cut(s)	433, 657
PsyI	GACNNNGTC	1 cut(s)	989
PvuII	CAGCTG	1 cut(s)	301
RruI	TCGCGA	1 cut(s)	1132
RsaI	GTAC	6 cut(s)	10, 255, 285, 388, 667, 1027
RsaNI	GTAC	6 cut(s)	9, 254, 284, 387, 666, 1026
RseI	CAYNNNNRTG	1 cut(s)	890
SaqAI	TTAA	5 cut(s)	189, 423, 516, 638, 647
SatI	GCNGC	4 cut(s)	117, 302, 998, 1158
Sau3AI	GATC	8 cut(s)	108, 409, 433, 657, 832, 882, 1095, 1186
Sau96I	GGNCC	3 cut(s)	565, 614, 924
SbfI	CCTGCAGG	1 cut(s)	913
ScaI	AGTACT	1 cut(s)	1027
SdaI	CCTGCAGG	1 cut(s)	913
SduI	GDGCHC	1 cut(s)	582
SfcI	CTRYAG	1 cut(s)	909
SfoI	GGCGCC	1 cut(s)	905
SinI	GGWCC	2 cut(s)	565, 614
SmiMI	CAYNNNNRTG	1 cut(s)	890
SmlI	CTYRAG	1 cut(s)	953
SmoI	CTYRAG	1 cut(s)	953
SphI	GCATGC	1 cut(s)	524
Sse8387I	CCTGCAGG	1 cut(s)	913
Sse9I	AATT	6 cut(s)	80, 468, 644, 828, 875, 1126
SsiI	CCGC	2 cut(s)	278, 655
SspDI	GGCGCC	1 cut(s)	903
SspI	AATATT	1 cut(s)	421
TaaI	ACNGT	3 cut(s)	294, 386, 991
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	3 cut(s)	132, 195, 535
TaqII	GACCGA	1 cut(s)	150
TasI	AATT	6 cut(s)	80, 468, 644, 828, 875, 1126
TatI	WGTACW	2 cut(s)	253, 1025
TfiI	GAWTC	3 cut(s)	248, 333, 1136
Tru1I	TTAA	5 cut(s)	189, 423, 516, 638, 647
Tru9I	TTAA	5 cut(s)	189, 423, 516, 638, 647
TscAI	CASTG	2 cut(s)	969, 1153
TseI	GCWGC	4 cut(s)	116, 301, 997, 1157
TspDTI	ATGAA	2 cut(s)	723, 1116
TspRI	CASTG	2 cut(s)	969, 1153
Tth111I	GACNNNGTC	1 cut(s)	989
Van91I	CCANNNNNTGG	2 cut(s)	574, 1057
VpaK11BI	GGWCC	2 cut(s)	565, 614
VspI	ATTAAT	1 cut(s)	638
XapI	RAATTY	3 cut(s)	468, 875, 1126
XceI	RCATGY	2 cut(s)	379, 524
XcmI	CCANNNNNNNNNTGG	1 cut(s)	559
XmiI	GTMKAC	2 cut(s)	174, 366
ZraI	GACGTC	1 cut(s)	220
ZrmI	AGTACT	1 cut(s)	1027
Zsp2I	ATGCAT	1 cut(s)	637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.