Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0009726

Physical Location & Seq

Genomic Coordinates Forward (+)

31621110 .. 31622267

Gene Structure 1158 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1238200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGATGGGTTTCAGTACTACCGCAGAGTCCGTCTCATGTTTCTTCTTCTCTGCATGGAAGAAACTAGCATCATGGGATAAAAGTAGAAAACGCAGACAAAACCAAGATTGGGCCTTTATGGAGGAATTATGCCGCCGATTTTCGCTAGATGAGATCATAGCAGCCACTGAATGCTTCAACGACAAGTTCCATATTGGTAGCAGTACCATGGGCTCAGTCTATAAAGGGTACATCAACGGCGGGGCAACTGTTGTTGCAGTCAAGCGATTTACAGGCAGCAGACAAGACTTCAGGAATGAGGTGCTGCTGTCCTGCCAGCTGCGCCACCCCAACCTTGTCCCTGTTATTGGATTCTGTGAAGAAAAGGAGGAACTCATCCTTGTCTACGACTACACATCCAAAGGTGCCCTCTCTTCTAAGCTGTTCAAAAGAGCGGATCTTGATCCGCTGCCCTGGAGGCAGAGGCTGAACATATGTATCGGGATAGCACGCGCATTGCATTATCTCCATGCAGGGCTAAAACATGTTATTGTCCACCGCGACGTGAAATGCTCCATCATACTATTGGATGAAAGGTTCGAAGCAAGGGTTTCAAACTTACTAACGTTCAAGATGGGTCCTCCTAGTTTGTCAAATAAATTCATACGAGTGACCTCTGGTAGGATCGTGGGCACTTTCGGGTATATTGATCCCGAGTATATCCATTTGGAACAATTTACAGAAAAATCTGATGTCTACTCGTTTGGAATGGTGCTGCTGGAAGTGTTGACTGCCAAATGGGCAAAAGAGTTTCATACATACACAGGCAGGCCGGACACCTTATGCGATATAATGGACCCTTCTTTGAGGGGTAAAATAGCTCCTGATTGTTTGCAAAAATTTATGGATATCGTTTACAGATGTACAAGTCCTACAGGAGCAGAGCGGCCCTCAGTGGGCGAAGTGCAAGTGGAACTGGAGTGCGCATTGGAGCTGCAAGACAGCGCAGATACCAAGAAGGACGCTTGTGTTGGTCATGCAGGTGACTATAGCTACCAAGGGATGTCAATTTGTGAAATTGAAGATATTTTCTCATTTTTGTTTAGGCAGCCGTCAACTTCGGATGTGTCAACTCTTGATTTGAATAGCATCGATTTTTCTGCTTCTGATGATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

386

Amino Acids

43.53

Weight (kDa)

5.9

Isoelectric Point (pI)

42.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	61 - 314	3.9e-27	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	64 - 318	1.9e-33	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009726)

Species	Orthologous Gene IDs
malus_domestica	MD04G1237900.v1.1 MD04G1238200.v1.1 MD04G1238300.v1.1 MD04G1238400.v1.1 MD12G1256100.v1.1 MD12G1256200.v1.1 MD12G1256400.v1.1 MD12G1256500.v1.1
pyrus_communis	pycom02g03710 pycom04g21120 pycom04g21130 pycom12g23490 pycom12g23510 pycom17g22130
rosa_chinensis	RchiOBHm_Chr0c37g0502971 RchiOBHm_Chr6g0265111 RchiOBHm_Chr6g0265191
rosa_multiflora	Rmu_co8298979.1_g000001 Rmu_ssc0000359.1_g000070
rosa_samantha	Rh6AG136900 Rh6BG133800
rosa_wichuraiana	Rw6G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1010
Acc16I	TGCGCA	1 cut(s)	964
Acc36I	ACCTGC	1 cut(s)	1010
AccB1I	GGYRCC	1 cut(s)	404
AccBSI	CCGCTC	2 cut(s)	434, 925
AccI	GTMKAC	2 cut(s)	384, 735
AccII	CGCG	2 cut(s)	492, 540
AciI	CCGC	7 cut(s)	21, 133, 240, 434, 446, 538, 925
AclI	AACGTT	1 cut(s)	605
AclWI	GGATC	4 cut(s)	437, 444, 671, 683
AcsI	RAATTY	2 cut(s)	638, 878
AcuI	CTGAAG	1 cut(s)	274
AfaI	GTAC	4 cut(s)	16, 205, 230, 904
AfiI	CCNNNNNNNGG	4 cut(s)	109, 347, 660, 935
AflIII	ACRYGT	1 cut(s)	523
AgsI	TTSAA	6 cut(s)	178, 427, 594, 610, 1061, 1123
AjiI	CACGTC	1 cut(s)	544
AjnI	CCWGG	1 cut(s)	452
AloI	GAACNNNNNNTCC	2 cut(s)	560, 592
AluBI	AGCT	5 cut(s)	319, 421, 860, 973, 1032
AluI	AGCT	5 cut(s)	319, 421, 860, 973, 1032
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	4 cut(s)	437, 444, 671, 683
AlwNI	CAGNNNCTG	2 cut(s)	167, 466
Ama87I	CYCGRG	1 cut(s)	692
AoxI	GGCC	3 cut(s)	111, 809, 926
ApeKI	GCWGC	8 cut(s)	161, 276, 304, 319, 448, 754, 973, 1087
ApoI	RAATTY	2 cut(s)	638, 878
AspLEI	GCGC	4 cut(s)	324, 494, 965, 986
AspS9I	GGNCC	4 cut(s)	111, 617, 835, 927
AsuHPI	GGTGA	1 cut(s)	1034
AsuII	TTCGAA	1 cut(s)	579
AvaI	CYCGRG	1 cut(s)	692
AvaII	GGWCC	2 cut(s)	617, 835
BaeGI	GKGCMC	2 cut(s)	409, 674
BaeI	ACNNNNGTAYC	2 cut(s)	460, 493
BanI	GGYRCC	1 cut(s)	404
BanII	GRGCYC	1 cut(s)	215
BbvI	GCAGC	8 cut(s)	173, 288, 291, 306, 435, 741, 960, 1099
BccI	CCATC	3 cut(s)	563, 607, 1145
BceAI	ACGGC	2 cut(s)	253, 1075
BcgI	CGANNNNNNTGC	2 cut(s)	1121, 1155
BciT130I	CCWGG	1 cut(s)	454
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	3 cut(s)	65, 146, 624
BfmI	CTRYAG	2 cut(s)	912, 1027
BfuAI	ACCTGC	1 cut(s)	1010
BglI	GCCNNNNNGGC	2 cut(s)	457, 779
BmcAI	AGTACT	1 cut(s)	16
Bme1390I	CCNGG	1 cut(s)	454
Bme18I	GGWCC	2 cut(s)	617, 835
BmeT110I	CYCGRG	1 cut(s)	692
BmgBI	CACGTC	1 cut(s)	544
BmgT120I	GGNCC	4 cut(s)	111, 617, 835, 927
BmiI	GGNNCC	3 cut(s)	406, 618, 837
BmrFI	CCNGG	1 cut(s)	454
BmsI	GCATC	2 cut(s)	77, 1137
BplI	GAGNNNNNCTC	4 cut(s)	17, 49, 914, 946
BpmI	CTGGAG	2 cut(s)	475, 977
Bpu14I	TTCGAA	1 cut(s)	579
Bsa29I	ATCGAT	1 cut(s)	1131
BsaBI	GATNNNNATC	1 cut(s)	441
BsaJI	CCNNGG	3 cut(s)	207, 452, 1036
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 347, 660, 935
Bse1I	ACTGG	1 cut(s)	960
Bse3DI	GCAATG	1 cut(s)	494
Bse8I	GATNNNNATC	1 cut(s)	441
BseBI	CCWGG	1 cut(s)	454
BseCI	ATCGAT	1 cut(s)	1131
BseDI	CCNNGG	3 cut(s)	207, 452, 1036
BseGI	GGATG	5 cut(s)	375, 395, 574, 1047, 1108
BseJI	GATNNNNATC	1 cut(s)	441
BseLI	CCNNNNNNNGG	4 cut(s)	109, 347, 660, 935
BseMI	GCAATG	1 cut(s)	494
BseMII	CTCAG	2 cut(s)	228, 945
BseNI	ACTGG	1 cut(s)	960
BseSI	GKGCMC	2 cut(s)	409, 674
BseXI	GCAGC	8 cut(s)	173, 288, 291, 306, 435, 741, 960, 1099
Bsh1236I	CGCG	2 cut(s)	492, 540
BshFI	GGCC	3 cut(s)	113, 811, 928
BshNI	GGYRCC	1 cut(s)	404
BshVI	ATCGAT	1 cut(s)	1131
BsiHKCI	CYCGRG	1 cut(s)	692
BsiSI	CCGG	1 cut(s)	812
BslFI	GGGAC	1 cut(s)	323
BslI	CCNNNNNNNGG	4 cut(s)	109, 347, 660, 935
BsmAI	GTCTC	1 cut(s)	37
BsmBI	CGTCTC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	323
BsmI	GAATGC	1 cut(s)	176
BsnI	GGCC	3 cut(s)	113, 811, 928
BsoBI	CYCGRG	1 cut(s)	692
Bsp119I	TTCGAA	1 cut(s)	579
Bsp1286I	GDGCHC	3 cut(s)	215, 409, 674
Bsp1407I	TGTACA	1 cut(s)	902
Bsp143I	GATC	5 cut(s)	153, 436, 442, 663, 688
Bsp19I	CCATGG	1 cut(s)	207
BspACI	CCGC	7 cut(s)	21, 133, 240, 434, 446, 538, 925
BspANI	GGCC	3 cut(s)	113, 811, 928
BspCNI	CTCAG	2 cut(s)	227, 944
BspDI	ATCGAT	1 cut(s)	1131
BspFNI	CGCG	2 cut(s)	492, 540
BspLI	GGNNCC	3 cut(s)	406, 618, 837
BspMI	ACCTGC	1 cut(s)	1010
BspPI	GGATC	4 cut(s)	437, 444, 671, 683
BspT104I	TTCGAA	1 cut(s)	579
BspT107I	GGYRCC	1 cut(s)	404
BsrBI	CCGCTC	2 cut(s)	434, 925
BsrDI	GCAATG	1 cut(s)	494
BsrGI	TGTACA	1 cut(s)	902
BsrI	ACTGG	1 cut(s)	960
BssECI	CCNNGG	3 cut(s)	207, 452, 1036
BssMI	GATC	5 cut(s)	153, 436, 442, 663, 688
BssT1I	CCWWGG	2 cut(s)	207, 1036
Bst2UI	CCWGG	1 cut(s)	454
Bst4CI	ACNGT	1 cut(s)	250
Bst6I	CTCTTC	1 cut(s)	418
BstAUI	TGTACA	1 cut(s)	902
BstBI	TTCGAA	1 cut(s)	579
BstC8I	GCNNGC	3 cut(s)	317, 490, 809
BstDEI	CTNAG	3 cut(s)	214, 417, 931
BstDSI	CCRYGG	1 cut(s)	207
BstENI	CCTNNNNNAGG	1 cut(s)	658
BstF5I	GGATG	5 cut(s)	375, 395, 574, 1047, 1108
BstFNI	CGCG	2 cut(s)	492, 540
BstHHI	GCGC	4 cut(s)	324, 494, 965, 986
BstKTI	GATC	5 cut(s)	156, 439, 445, 666, 691
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	5 cut(s)	153, 436, 442, 663, 688
BstMWI	GCNNNNNNNGC	3 cut(s)	321, 457, 779
BstNI	CCWGG	1 cut(s)	454
BstNSI	RCATGY	1 cut(s)	527
BstSCI	CCNGG	1 cut(s)	452
BstSFI	CTRYAG	2 cut(s)	912, 1027
BstSLI	GKGCMC	2 cut(s)	409, 674
BstUI	CGCG	2 cut(s)	492, 540
BstV1I	GCAGC	8 cut(s)	173, 288, 291, 306, 435, 741, 960, 1099
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
Bsu15I	ATCGAT	1 cut(s)	1131
BsuRI	GGCC	3 cut(s)	113, 811, 928
BsuTUI	ATCGAT	1 cut(s)	1131
BtgI	CCRYGG	1 cut(s)	207
BtrI	CACGTC	1 cut(s)	544
BtsCI	GGATG	5 cut(s)	375, 395, 574, 1047, 1108
BtsIMutI	CAGTG	2 cut(s)	165, 939
BveI	ACCTGC	1 cut(s)	1010
Cac8I	GCNNGC	3 cut(s)	317, 490, 809
CaiI	CAGNNNCTG	2 cut(s)	167, 466
CfoI	GCGC	4 cut(s)	324, 494, 965, 986
Cfr13I	GGNCC	4 cut(s)	111, 617, 835, 927
ClaI	ATCGAT	1 cut(s)	1131
CseI	GACGC	1 cut(s)	1010
Csp6I	GTAC	4 cut(s)	15, 204, 229, 903
CviAII	CATG	7 cut(s)	36, 54, 72, 208, 509, 524, 1016
CviQI	GTAC	4 cut(s)	15, 204, 229, 903
DdeI	CTNAG	3 cut(s)	214, 417, 931
DpnI	GATC	5 cut(s)	155, 438, 444, 665, 690
DpnII	GATC	5 cut(s)	153, 436, 442, 663, 688
Eam1104I	CTCTTC	1 cut(s)	418
EarI	CTCTTC	1 cut(s)	418
Eco130I	CCWWGG	2 cut(s)	207, 1036
Eco24I	GRGCYC	1 cut(s)	215
Eco32I	GATATC	1 cut(s)	889
Eco47I	GGWCC	2 cut(s)	617, 835
Eco57I	CTGAAG	1 cut(s)	274
Eco88I	CYCGRG	1 cut(s)	692
EcoNI	CCTNNNNNAGG	1 cut(s)	658
EcoO109I	RGGNCCY	1 cut(s)	617
EcoRII	CCWGG	1 cut(s)	452
EcoRV	GATATC	1 cut(s)	889
EcoT14I	CCWWGG	2 cut(s)	207, 1036
EcoT38I	GRGCYC	1 cut(s)	215
ErhI	CCWWGG	2 cut(s)	207, 1036
Esp3I	CGTCTC	1 cut(s)	37
FaeI	CATG	7 cut(s)	39, 57, 75, 211, 512, 527, 1019
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	7 cut(s)	35, 53, 71, 207, 508, 523, 1015
FauI	CCCGC	1 cut(s)	233
FauNDI	CATATG	1 cut(s)	473
FblI	GTMKAC	2 cut(s)	384, 735
FokI	GGATG	5 cut(s)	362, 382, 581, 1054, 1115
FriOI	GRGCYC	1 cut(s)	215
FspAI	RTGCGCAY	1 cut(s)	964
FspBI	CTAG	3 cut(s)	65, 146, 624
FspI	TGCGCA	1 cut(s)	964
GlaI	GCGC	4 cut(s)	323, 493, 964, 985
GsuI	CTGGAG	2 cut(s)	475, 977
HaeIII	GGCC	3 cut(s)	113, 811, 928
HapII	CCGG	1 cut(s)	812
HgaI	GACGC	1 cut(s)	1010
HhaI	GCGC	4 cut(s)	324, 494, 965, 986
Hin1II	CATG	7 cut(s)	39, 57, 75, 211, 512, 527, 1019
Hin6I	GCGC	4 cut(s)	322, 492, 963, 984
HinP1I	GCGC	4 cut(s)	322, 492, 963, 984
HincII	GTYRAC	3 cut(s)	768, 1095, 1110
HindII	GTYRAC	3 cut(s)	768, 1095, 1110
HinfI	GANTC	2 cut(s)	26, 351
HpaII	CCGG	1 cut(s)	812
HphI	GGTGA	1 cut(s)	1034
Hpy166II	GTNNAC	7 cut(s)	385, 535, 736, 768, 895, 1095, 1110
Hpy188I	TCNGA	3 cut(s)	730, 1102, 1147
Hpy188III	TCNNGA	7 cut(s)	292, 440, 481, 610, 692, 863, 1115
Hpy8I	GTNNAC	7 cut(s)	385, 535, 736, 768, 895, 1095, 1110
Hpy99I	CGWCG	1 cut(s)	545
HpyAV	CCTTC	2 cut(s)	849, 991
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4IV	ACGT	2 cut(s)	543, 605
HpyCH4V	TGCA	8 cut(s)	53, 257, 499, 512, 874, 946, 976, 1019
HpyF10VI	GCNNNNNNNGC	3 cut(s)	321, 457, 779
HpyF3I	CTNAG	3 cut(s)	214, 417, 931
HpySE526I	ACGT	2 cut(s)	543, 605
Hsp92II	CATG	7 cut(s)	39, 57, 75, 211, 512, 527, 1019
HspAI	GCGC	4 cut(s)	322, 492, 963, 984
Kzo9I	GATC	5 cut(s)	153, 436, 442, 663, 688
LmnI	GCTCC	4 cut(s)	557, 865, 917, 970
Lsp1109I	GCAGC	8 cut(s)	173, 288, 291, 306, 435, 741, 960, 1099
LweI	GCATC	2 cut(s)	77, 1137
MaeI	CTAG	3 cut(s)	65, 146, 624
MaeII	ACGT	2 cut(s)	543, 605
MaeIII	GTNAC	2 cut(s)	649, 1022
MalI	GATC	5 cut(s)	155, 438, 444, 665, 690
MbiI	CCGCTC	2 cut(s)	434, 925
MboI	GATC	5 cut(s)	153, 436, 442, 663, 688
MboII	GAAGA	6 cut(s)	34, 37, 70, 371, 405, 1073
MflI	RGATCY	1 cut(s)	436
MhlI	GDGCHC	3 cut(s)	215, 409, 674
MluCI	AATT	6 cut(s)	125, 638, 713, 878, 1047, 1056
MlyI	GAGTC	1 cut(s)	35
MslI	CAYNNNNRTG	2 cut(s)	647, 1020
MspA1I	CMGCKG	2 cut(s)	319, 448
MspI	CCGG	1 cut(s)	812
MspR9I	CCNGG	1 cut(s)	454
Mva1269I	GAATGC	1 cut(s)	176
MvaI	CCWGG	1 cut(s)	454
MvnI	CGCG	2 cut(s)	492, 540
MwoI	GCNNNNNNNGC	3 cut(s)	321, 457, 779
NcoI	CCATGG	1 cut(s)	207
NdeI	CATATG	1 cut(s)	473
NdeII	GATC	5 cut(s)	153, 436, 442, 663, 688
NlaIII	CATG	7 cut(s)	39, 57, 75, 211, 512, 527, 1019
NlaIV	GGNNCC	3 cut(s)	406, 618, 837
NmuCI	GTSAC	2 cut(s)	649, 1022
NsbI	TGCGCA	1 cut(s)	964
NspI	RCATGY	1 cut(s)	527
NspV	TTCGAA	1 cut(s)	579
PaqCI	CACCTGC	1 cut(s)	1010
PciI	ACATGT	1 cut(s)	523
PctI	GAATGC	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	351
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
PpuMI	RGGWCCY	1 cut(s)	617
PscI	ACATGT	1 cut(s)	523
Psp1406I	AACGTT	1 cut(s)	605
Psp5II	RGGWCCY	1 cut(s)	617
Psp6I	CCWGG	1 cut(s)	452
PspGI	CCWGG	1 cut(s)	452
PspN4I	GGNNCC	3 cut(s)	406, 618, 837
PspPI	GGNCC	4 cut(s)	111, 617, 835, 927
PspPPI	RGGWCCY	1 cut(s)	617
PstNI	CAGNNNCTG	2 cut(s)	167, 466
PsuI	RGATCY	1 cut(s)	436
PvuII	CAGCTG	1 cut(s)	319
RsaI	GTAC	4 cut(s)	16, 205, 230, 904
RsaNI	GTAC	4 cut(s)	15, 204, 229, 903
RseI	CAYNNNNRTG	2 cut(s)	647, 1020
Sau3AI	GATC	5 cut(s)	153, 436, 442, 663, 688
Sau96I	GGNCC	4 cut(s)	111, 617, 835, 927
ScaI	AGTACT	1 cut(s)	16
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	1 cut(s)	454
SduI	GDGCHC	3 cut(s)	215, 409, 674
SfaNI	GCATC	2 cut(s)	77, 1137
SfcI	CTRYAG	2 cut(s)	912, 1027
SfuI	TTCGAA	1 cut(s)	579
SinI	GGWCC	2 cut(s)	617, 835
SmiMI	CAYNNNNRTG	2 cut(s)	647, 1020
Sse9I	AATT	6 cut(s)	125, 638, 713, 878, 1047, 1056
SsiI	CCGC	7 cut(s)	21, 133, 240, 434, 446, 538, 925
SspMI	CTAG	3 cut(s)	65, 146, 624
StyD4I	CCNGG	1 cut(s)	452
StyI	CCWWGG	2 cut(s)	207, 1036
TaaI	ACNGT	1 cut(s)	250
TaiI	ACGT	2 cut(s)	546, 608
TaqI	TCGA	2 cut(s)	579, 1131
TasI	AATT	6 cut(s)	125, 638, 713, 878, 1047, 1056
TatI	WGTACW	2 cut(s)	14, 902
TauI	GCSGC	2 cut(s)	135, 928
TfiI	GAWTC	1 cut(s)	351
TscAI	CASTG	2 cut(s)	172, 939
TseFI	GTSAC	2 cut(s)	649, 1022
TseI	GCWGC	8 cut(s)	161, 276, 304, 319, 448, 754, 973, 1087
Tsp45I	GTSAC	2 cut(s)	649, 1022
TspDTI	ATGAA	3 cut(s)	585, 631, 782
TspGWI	ACGGA	1 cut(s)	19
TspRI	CASTG	2 cut(s)	172, 939
VpaK11BI	GGWCC	2 cut(s)	617, 835
XagI	CCTNNNNNAGG	1 cut(s)	658
XapI	RAATTY	2 cut(s)	638, 878
XceI	RCATGY	1 cut(s)	527
XcmI	CCANNNNNNNNNTGG	1 cut(s)	562
XmiI	GTMKAC	2 cut(s)	384, 735
XspI	CTAG	3 cut(s)	65, 146, 624
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.