pycom12g23510

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0009726
Physical Location & Seq
Forward (+)
24064671 .. 24065799
1129 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g23510.2

Sequence Viewer

Length: 1080 bp
ATGCCGTCCTTATACGTTGGCGGCATTGGCTTTGGCCCAGTATACAAAGGGCGTATTAAGGTCGATGGGGATGAGGACAGGAAAGACGTTGCAATCAAGCGCATTTCCAGAGGTTCAGAACAAGGAATGCGTGAGTTCAGGGCGGAGGTACAGCTACTGTGCCAGCTGCGCCACCCCAACCTCATCTCTCTCATCGGATTCTGCCAAGAAAATGGAGAGTGTATGATTGTCTACGACTACATGCCCAACGGTGAACTCTCTGATTACCTCTTTGATCGTTCCAATATTAAAAATAAAGATCCCTTTCCCTTGACTTGGAAGCAAAGGCTGAAAATTTGTATTGGGGTGGCGAGCGTAATACACTACCTCCACGCAGGGGTTAAGCATGCTGTCATCCATCGAGACGTGAAATGCTCCAACGTTCTATTGGACCAAAACTTGGTGCCCAAGCTTTCTGACTTCGGGTTGTCCAAGATGGGTCCTCCTGCCTTATCAAATGCATTAATCAAATTAAACTCGCAGGTGTCTGGTACATTCGGGTATCTTGATCCAAAGTATGCATTGTCCGGGCAACTTACCGAAAAATCTGATGTCTTTTCATTTGGAATGGTGTTATTTGAAGTGTTGTGTGCCAAATCTGGTTCAAGAGAGATACCTGAATGTGTGGAAAGGGGTGAGACTTTCCCTGCTATGATTGATCCATTTCTGGTGGGAAAAGTAGCTCCAGATTGTTTGAGAAAATTTATGAACATCGCCGAGAAATGTGTGCGCCCTACAGGAGCTGAACGGCCCACGATGGGTGAAATGCAGGTGGAACTTGAGGGCGCACTGGAGTTGCAGGAGAGGGCTGACGCCGTCAAGCAGCTCAATGAGTTGGGGACAACTGCAAGCAGTTCTCTTGCTCCTCCTCCTGCCCATGACATGGAGGACTATTCCTACCAAGATATATCATTTTCTGAGATCAACGAAAATTTACCCCATATGTATTTGCGGGAGTGGCCGTGGGATTTATTTACTGATCCGGCATGTTATGCTGATGGTATTGCTAGAGTTGATCCTAACAGGGAAGTAATAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169
Pfam Domains
Protein Families
Pkinase_Tyr

Protein Analysis

360

Amino Acids

40.12

Weight (kDa)

5.32

Isoelectric Point (pI)

41.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 511, 799
Acc36I ACCTGC 2 cut(s) 511, 799
AccB1I GGYRCC 1 cut(s) 442
AccB7I CCANNNNNTGG 2 cut(s) 439, 922
AccI GTMKAC 2 cut(s) 42, 231
AciI CCGC 3 cut(s) 21, 143, 991
AclI AACGTT 1 cut(s) 420
AclWI GGATC 5 cut(s) 293, 542, 692, 1013, 1049
AcoI YGGCCR 1 cut(s) 998
AcsI RAATTY 3 cut(s) 333, 740, 970
AcyI GRCGYC 1 cut(s) 852
AfaI GTAC 2 cut(s) 150, 532
AfiI CCNNNNNNNGG 5 cut(s) 315, 376, 439, 797, 922
AgsI TTSAA 2 cut(s) 620, 645
AjiI CACGTC 1 cut(s) 406
AluBI AGCT 6 cut(s) 154, 166, 451, 722, 782, 865
AluI AGCT 6 cut(s) 154, 166, 451, 722, 782, 865
Alw26I GTCTC 2 cut(s) 396, 671
AlwI GGATC 5 cut(s) 293, 542, 692, 1013, 1049
AlwNI CAGNNNCTG 2 cut(s) 157, 782
AoxI GGCC 3 cut(s) 34, 788, 998
ApeKI GCWGC 2 cut(s) 166, 862
ApoI RAATTY 3 cut(s) 333, 740, 970
AseI ATTAAT 1 cut(s) 503
AspLEI GCGC 4 cut(s) 102, 171, 771, 827
AspS9I GGNCC 4 cut(s) 35, 430, 479, 789
AsuC2I CCSGG 1 cut(s) 568
AsuHPI GGTGA 3 cut(s) 263, 686, 812
AvaII GGWCC 2 cut(s) 430, 479
BaeGI GKGCMC 1 cut(s) 447
BanI GGYRCC 1 cut(s) 442
BbvI GCAGC 2 cut(s) 153, 874
BccI CCATC 5 cut(s) 59, 405, 469, 790, 1031
BceAI ACGGC 3 cut(s) 803, 839, 985
BcnI CCSGG 1 cut(s) 568
BcoDI GTCTC 2 cut(s) 396, 671
BfaI CTAG 1 cut(s) 1047
BfmI CTRYAG 1 cut(s) 774
BfuAI ACCTGC 2 cut(s) 511, 799
BisI GCNGC 3 cut(s) 22, 167, 863
BlsI GCNGC 3 cut(s) 23, 168, 864
Bme1390I CCNGG 1 cut(s) 568
Bme18I GGWCC 2 cut(s) 430, 479
BmgBI CACGTC 1 cut(s) 406
BmgT120I GGNCC 4 cut(s) 35, 430, 479, 789
BmiI GGNNCC 2 cut(s) 444, 480
BmrFI CCNGG 1 cut(s) 568
BmrI ACTGGG 1 cut(s) 32
BmuI ACTGGG 1 cut(s) 32
BpmI CTGGAG 2 cut(s) 708, 851
BpuEI CTTGAG 1 cut(s) 839
BpuMI CCSGG 1 cut(s) 568
BsaHI GRCGYC 1 cut(s) 852
BsaJI CCNNGG 1 cut(s) 1001
BsaXI ACNNNNNCTCC 4 cut(s) 351, 381, 986, 1016
Bsc4I CCNNNNNNNGG 5 cut(s) 315, 376, 439, 797, 922
Bse1I ACTGG 2 cut(s) 38, 834
BseDI CCNNGG 1 cut(s) 1001
BseGI GGATG 2 cut(s) 76, 393
BseLI CCNNNNNNNGG 5 cut(s) 315, 376, 439, 797, 922
BseMII CTCAG 1 cut(s) 948
BseNI ACTGG 2 cut(s) 38, 834
BseRI GAGGAG 2 cut(s) 894, 897
BseSI GKGCMC 1 cut(s) 447
BseXI GCAGC 2 cut(s) 153, 874
BshFI GGCC 3 cut(s) 36, 790, 1000
BshNI GGYRCC 1 cut(s) 442
BsiSI CCGG 2 cut(s) 567, 1022
BslFI GGGAC 1 cut(s) 892
BslI CCNNNNNNNGG 5 cut(s) 315, 376, 439, 797, 922
BsmAI GTCTC 2 cut(s) 396, 671
BsmBI CGTCTC 1 cut(s) 396
BsmFI GGGAC 1 cut(s) 892
BsmI GAATGC 1 cut(s) 132
BsnI GGCC 3 cut(s) 36, 790, 1000
Bsp1286I GDGCHC 1 cut(s) 447
Bsp143I GATC 7 cut(s) 274, 298, 547, 697, 960, 1018, 1054
BspACI CCGC 3 cut(s) 21, 143, 991
BspANI GGCC 3 cut(s) 36, 790, 1000
BspCNI CTCAG 1 cut(s) 949
BspLI GGNNCC 2 cut(s) 444, 480
BspMI ACCTGC 2 cut(s) 511, 799
BspPI GGATC 5 cut(s) 293, 542, 692, 1013, 1049
BspT107I GGYRCC 1 cut(s) 442
BsrI ACTGG 2 cut(s) 38, 834
BssECI CCNNGG 1 cut(s) 1001
BssMI GATC 7 cut(s) 274, 298, 547, 697, 960, 1018, 1054
BssNAI GTATAC 1 cut(s) 43
BssNI GRCGYC 1 cut(s) 852
Bst1107I GTATAC 1 cut(s) 43
Bst4CI ACNGT 2 cut(s) 159, 251
BstACI GRCGYC 1 cut(s) 852
BstAPI GCANNNNNTGC 1 cut(s) 1031
BstC8I GCNNGC 4 cut(s) 164, 352, 387, 889
BstDEI CTNAG 2 cut(s) 957, 1077
BstDSI CCRYGG 1 cut(s) 1001
BstF5I GGATG 2 cut(s) 76, 393
BstHHI GCGC 4 cut(s) 102, 171, 771, 827
BstKTI GATC 7 cut(s) 277, 301, 550, 700, 963, 1021, 1057
BstMAI GTCTC 2 cut(s) 396, 671
BstMBI GATC 7 cut(s) 274, 298, 547, 697, 960, 1018, 1054
BstMWI GCNNNNNNNGC 4 cut(s) 27, 168, 997, 1031
BstNSI RCATGY 3 cut(s) 244, 389, 1029
BstSCI CCNGG 1 cut(s) 566
BstSFI CTRYAG 1 cut(s) 774
BstSLI GKGCMC 1 cut(s) 447
BstV1I GCAGC 2 cut(s) 153, 874
BstX2I RGATCY 1 cut(s) 298
BstXI CCANNNNNNTGG 1 cut(s) 212
BstYI RGATCY 1 cut(s) 298
BstZ17I GTATAC 1 cut(s) 43
BsuRI GGCC 3 cut(s) 36, 790, 1000
BtgI CCRYGG 1 cut(s) 1001
BtgZI GCGATG 1 cut(s) 736
BtrI CACGTC 1 cut(s) 406
BtsCI GGATG 2 cut(s) 76, 393
BtsIMutI CAGTG 1 cut(s) 827
BveI ACCTGC 2 cut(s) 511, 799
Cac8I GCNNGC 4 cut(s) 164, 352, 387, 889
CaiI CAGNNNCTG 2 cut(s) 157, 782
CfoI GCGC 4 cut(s) 102, 171, 771, 827
Cfr13I GGNCC 4 cut(s) 35, 430, 479, 789
CseI GACGC 1 cut(s) 860
Csp6I GTAC 2 cut(s) 149, 531
CviAII CATG 5 cut(s) 241, 386, 917, 922, 1026
CviQI GTAC 2 cut(s) 149, 531
DdeI CTNAG 2 cut(s) 957, 1077
DpnI GATC 7 cut(s) 276, 300, 549, 699, 962, 1020, 1056
DpnII GATC 7 cut(s) 274, 298, 547, 697, 960, 1018, 1054
EaeI YGGCCR 1 cut(s) 998
EciI GGCGGA 1 cut(s) 158
Eco47I GGWCC 2 cut(s) 430, 479
EcoO109I RGGNCCY 1 cut(s) 479
EcoT22I ATGCAT 2 cut(s) 502, 562
Esp3I CGTCTC 1 cut(s) 396
FaeI CATG 5 cut(s) 244, 389, 920, 925, 1029
FaqI GGGAC 1 cut(s) 892
FatI CATG 5 cut(s) 240, 385, 916, 921, 1025
FauI CCCGC 1 cut(s) 984
FauNDI CATATG 1 cut(s) 981
FblI GTMKAC 2 cut(s) 42, 231
Fnu4HI GCNGC 3 cut(s) 22, 167, 863
FokI GGATG 2 cut(s) 83, 380
Fsp4HI GCNGC 3 cut(s) 22, 167, 863
FspBI CTAG 1 cut(s) 1047
GlaI GCGC 4 cut(s) 101, 170, 770, 826
GluI GCNGC 3 cut(s) 22, 167, 863
GsuI CTGGAG 2 cut(s) 708, 851
HaeIII GGCC 3 cut(s) 36, 790, 1000
HapII CCGG 2 cut(s) 567, 1022
HgaI GACGC 1 cut(s) 860
HhaI GCGC 4 cut(s) 102, 171, 771, 827
Hin1I GRCGYC 1 cut(s) 852
Hin1II CATG 5 cut(s) 244, 389, 920, 925, 1029
Hin6I GCGC 4 cut(s) 100, 169, 769, 825
HinP1I GCGC 4 cut(s) 100, 169, 769, 825
HindIII AAGCTT 1 cut(s) 449
HinfI GANTC 1 cut(s) 198
HpaII CCGG 2 cut(s) 567, 1022
HphI GGTGA 3 cut(s) 263, 686, 812
Hpy166II GTNNAC 3 cut(s) 43, 232, 254
Hpy188I TCNGA 6 cut(s) 118, 197, 262, 457, 589, 958
Hpy188III TCNNGA 5 cut(s) 108, 401, 545, 645, 725
Hpy8I GTNNAC 3 cut(s) 43, 232, 254
HpyCH4III ACNGT 2 cut(s) 159, 251
HpyCH4IV ACGT 4 cut(s) 15, 87, 405, 420
HpyCH4V TGCA 6 cut(s) 92, 500, 560, 808, 838, 887
HpyF10VI GCNNNNNNNGC 4 cut(s) 27, 168, 997, 1031
HpyF3I CTNAG 2 cut(s) 957, 1077
HpySE526I ACGT 4 cut(s) 15, 87, 405, 420
Hsp92I GRCGYC 1 cut(s) 852
Hsp92II CATG 5 cut(s) 244, 389, 920, 925, 1029
HspAI GCGC 4 cut(s) 100, 169, 769, 825
Kzo9I GATC 7 cut(s) 274, 298, 547, 697, 960, 1018, 1054
LmnI GCTCC 4 cut(s) 419, 727, 779, 907
Lsp1109I GCAGC 2 cut(s) 153, 874
MaeI CTAG 1 cut(s) 1047
MaeII ACGT 4 cut(s) 15, 87, 405, 420
MalI GATC 7 cut(s) 276, 300, 549, 699, 962, 1020, 1056
MboI GATC 7 cut(s) 274, 298, 547, 697, 960, 1018, 1054
MflI RGATCY 1 cut(s) 298
MhlI GDGCHC 1 cut(s) 447
MluCI AATT 4 cut(s) 333, 509, 740, 970
MmeI TCCRAC 1 cut(s) 441
Mph1103I ATGCAT 2 cut(s) 502, 562
MseI TTAA 5 cut(s) 57, 288, 381, 503, 512
MspA1I CMGCKG 1 cut(s) 166
MspI CCGG 2 cut(s) 567, 1022
MspR9I CCNGG 1 cut(s) 568
Mva1269I GAATGC 1 cut(s) 132
MwoI GCNNNNNNNGC 4 cut(s) 27, 168, 997, 1031
NciI CCSGG 1 cut(s) 568
NdeI CATATG 1 cut(s) 981
NdeII GATC 7 cut(s) 274, 298, 547, 697, 960, 1018, 1054
NlaIII CATG 5 cut(s) 244, 389, 920, 925, 1029
NlaIV GGNNCC 2 cut(s) 444, 480
NmeAIII GCCGAG 1 cut(s) 781
NsiI ATGCAT 2 cut(s) 502, 562
NspI RCATGY 3 cut(s) 244, 389, 1029
PaeI GCATGC 1 cut(s) 389
PaqCI CACCTGC 2 cut(s) 511, 799
PctI GAATGC 1 cut(s) 132
PfeI GAWTC 1 cut(s) 198
PflFI GACNNNGTC 1 cut(s) 854
PflMI CCANNNNNTGG 2 cut(s) 439, 922
PkrI GCNGC 3 cut(s) 23, 168, 864
PpuMI RGGWCCY 1 cut(s) 479
PshBI ATTAAT 1 cut(s) 503
Psp1406I AACGTT 1 cut(s) 420
Psp5II RGGWCCY 1 cut(s) 479
PspN4I GGNNCC 2 cut(s) 444, 480
PspPI GGNCC 4 cut(s) 35, 430, 479, 789
PspPPI RGGWCCY 1 cut(s) 479
PstNI CAGNNNCTG 2 cut(s) 157, 782
PsuI RGATCY 1 cut(s) 298
PsyI GACNNNGTC 1 cut(s) 854
PvuII CAGCTG 1 cut(s) 166
RsaI GTAC 2 cut(s) 150, 532
RsaNI GTAC 2 cut(s) 149, 531
SaqAI TTAA 5 cut(s) 57, 288, 381, 503, 512
SatI GCNGC 3 cut(s) 22, 167, 863
Sau3AI GATC 7 cut(s) 274, 298, 547, 697, 960, 1018, 1054
Sau96I GGNCC 4 cut(s) 35, 430, 479, 789
ScrFI CCNGG 1 cut(s) 568
SduI GDGCHC 1 cut(s) 447
SfcI CTRYAG 1 cut(s) 774
SinI GGWCC 2 cut(s) 430, 479
SmlI CTYRAG 1 cut(s) 818
SmoI CTYRAG 1 cut(s) 818
SphI GCATGC 1 cut(s) 389
Sse9I AATT 4 cut(s) 333, 509, 740, 970
SsiI CCGC 3 cut(s) 21, 143, 991
SspI AATATT 1 cut(s) 286
SspMI CTAG 1 cut(s) 1047
StyD4I CCNGG 1 cut(s) 566
TaaI ACNGT 2 cut(s) 159, 251
TaiI ACGT 4 cut(s) 18, 90, 408, 423
TaqI TCGA 2 cut(s) 63, 400
TasI AATT 4 cut(s) 333, 509, 740, 970
TauI GCSGC 1 cut(s) 24
TfiI GAWTC 1 cut(s) 198
Tru1I TTAA 5 cut(s) 57, 288, 381, 503, 512
Tru9I TTAA 5 cut(s) 57, 288, 381, 503, 512
TscAI CASTG 1 cut(s) 834
TseI GCWGC 2 cut(s) 166, 862
TspDTI ATGAA 2 cut(s) 588, 761
TspRI CASTG 1 cut(s) 834
Tth111I GACNNNGTC 1 cut(s) 854
Van91I CCANNNNNTGG 2 cut(s) 439, 922
VpaK11BI GGWCC 2 cut(s) 430, 479
VspI ATTAAT 1 cut(s) 503
XapI RAATTY 3 cut(s) 333, 740, 970
XceI RCATGY 3 cut(s) 244, 389, 1029
XcmI CCANNNNNNNNNTGG 1 cut(s) 424
XmiI GTMKAC 2 cut(s) 42, 231
XspI CTAG 1 cut(s) 1047
Zsp2I ATGCAT 2 cut(s) 502, 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.