Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000359.1

Orthogroup ID

OG0009726

Physical Location & Seq

Genomic Coordinates Reverse (-)

364671 .. 365285

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000359.1_g000070.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

atggggtttcttgcttctgggactgaagtctcgcgtttcttctttccatggaagaaaacaaaacccaaaaaactccaaaactggccattcaccgaaggaaaatgcattcgattttcactaaatgagatcagaacagcgaccgacgacttcaaggagtatctcggcagcggcgtcttctccgacgtttacaaagggcatattattaacgacggaaccagcatggttgttgcaatcaagcgccttataaaagataatcagatacagccagagtctgcgttcgacacggagatactgttgttctgccagttgagccaccctaacctcgtttcattcattggattttgcgaagaaggagatgaccgtatgctagtttatgagttccttgataatggtcccttgtctaatcatcttttcggcaagaccgccggagatccactctcctggaagaaacggttggatatctgcattggggctgcgcgtggtgtacattacctccacacagggatgaagcgtgccatcatccacagagacctaaaaagcttcaactatttcctgaatgttgtgttgtgtctgatgaatctccaacaacaacaatatgtgaatgttgttgtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

204

Amino Acids

23.35

Weight (kDa)

8.55

Isoelectric Point (pI)

28.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009726)

Species	Orthologous Gene IDs
malus_domestica	MD04G1237900.v1.1 MD04G1238200.v1.1 MD04G1238300.v1.1 MD04G1238400.v1.1 MD12G1256100.v1.1 MD12G1256200.v1.1 MD12G1256400.v1.1 MD12G1256500.v1.1
pyrus_communis	pycom02g03710 pycom04g21120 pycom04g21130 pycom12g23490 pycom12g23510 pycom17g22130
rosa_chinensis	RchiOBHm_Chr0c37g0502971 RchiOBHm_Chr6g0265111 RchiOBHm_Chr6g0265191
rosa_multiflora	Rmu_co8298979.1_g000001 Rmu_ssc0000359.1_g000070
rosa_samantha	Rh6AG136900 Rh6BG133800
rosa_wichuraiana	Rw6G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	245
AccII	CGCG	2 cut(s)	34, 478
AciI	CCGC	2 cut(s)	168, 423
AclWI	GGATC	1 cut(s)	425
AcoI	YGGCCR	1 cut(s)	83
AcuI	CTGAAG	1 cut(s)	45
AcyI	GRCGYC	1 cut(s)	171
AfaI	GTAC	1 cut(s)	486
AgsI	TTSAA	2 cut(s)	151, 544
AjnI	CCWGG	1 cut(s)	440
AjuI	GAANNNNNNNTTGG	2 cut(s)	437, 469
AluBI	AGCT	1 cut(s)	540
AluI	AGCT	1 cut(s)	540
Alw26I	GTCTC	2 cut(s)	34, 522
AlwI	GGATC	1 cut(s)	425
AlwNI	CAGNNNCTG	1 cut(s)	272
AoxI	GGCC	1 cut(s)	83
ApeKI	GCWGC	2 cut(s)	165, 473
AspLEI	GCGC	2 cut(s)	240, 478
AspS9I	GGNCC	1 cut(s)	392
AsuHPI	GGTGA	1 cut(s)	82
AvaII	GGWCC	1 cut(s)	392
BaeI	ACNNNNGTAYC	2 cut(s)	281, 314
BalI	TGGCCA	1 cut(s)	85
BbsI	GAAGAC	1 cut(s)	166
BbvI	GCAGC	2 cut(s)	177, 460
BccI	CCATC	1 cut(s)	524
BciT130I	CCWGG	1 cut(s)	442
BcoDI	GTCTC	2 cut(s)	34, 522
BfaI	CTAG	1 cut(s)	368
BfoI	RGCGCY	1 cut(s)	241
BisI	GCNGC	3 cut(s)	166, 169, 474
BlsI	GCNGC	3 cut(s)	167, 170, 475
Bme1390I	CCNGG	1 cut(s)	442
Bme18I	GGWCC	1 cut(s)	392
BmgT120I	GGNCC	1 cut(s)	392
BmiI	GGNNCC	2 cut(s)	214, 394
BmrFI	CCNGG	1 cut(s)	442
BoxI	GACNNNNGTC	1 cut(s)	26
BpiI	GAAGAC	1 cut(s)	166
BplI	GAGNNNNNCTC	2 cut(s)	420, 452
BsaHI	GRCGYC	1 cut(s)	171
BsaI	GGTCTC	1 cut(s)	522
BsaJI	CCNNGG	1 cut(s)	47
BsaXI	ACNNNNNCTCC	4 cut(s)	278, 308, 477, 507
Bse1I	ACTGG	2 cut(s)	86, 304
BseBI	CCWGG	1 cut(s)	442
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	2 cut(s)	510, 519
BseNI	ACTGG	2 cut(s)	86, 304
BseXI	GCAGC	2 cut(s)	177, 460
Bsh1236I	CGCG	2 cut(s)	34, 478
Bsh1285I	CGRYCG	1 cut(s)	141
BshFI	GGCC	1 cut(s)	85
BsiEI	CGRYCG	1 cut(s)	141
BsiSI	CCGG	1 cut(s)	426
BslFI	GGGAC	2 cut(s)	34, 378
BsmAI	GTCTC	2 cut(s)	34, 522
BsmFI	GGGAC	2 cut(s)	34, 378
BsmI	GAATGC	1 cut(s)	105
BsnI	GGCC	1 cut(s)	85
Bso31I	GGTCTC	1 cut(s)	522
Bsp1407I	TGTACA	1 cut(s)	484
Bsp143I	GATC	2 cut(s)	126, 430
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	2 cut(s)	168, 423
BspANI	GGCC	1 cut(s)	85
BspFNI	CGCG	2 cut(s)	34, 478
BspLI	GGNNCC	2 cut(s)	214, 394
BspPI	GGATC	1 cut(s)	425
BspTNI	GGTCTC	1 cut(s)	522
BsrGI	TGTACA	1 cut(s)	484
BsrI	ACTGG	2 cut(s)	86, 304
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	2 cut(s)	126, 430
BssNI	GRCGYC	1 cut(s)	171
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	442
Bst4CI	ACNGT	3 cut(s)	294, 362, 453
BstACI	GRCGYC	1 cut(s)	171
BstAUI	TGTACA	1 cut(s)	484
BstC8I	GCNNGC	1 cut(s)	513
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	2 cut(s)	510, 519
BstFNI	CGCG	2 cut(s)	34, 478
BstH2I	RGCGCY	1 cut(s)	241
BstHHI	GCGC	2 cut(s)	240, 478
BstKTI	GATC	2 cut(s)	129, 433
BstMAI	GTCTC	2 cut(s)	34, 522
BstMBI	GATC	2 cut(s)	126, 430
BstMCI	CGRYCG	1 cut(s)	141
BstMWI	GCNNNNNNNGC	1 cut(s)	309
BstNI	CCWGG	1 cut(s)	442
BstPAI	GACNNNNGTC	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	440
BstUI	CGCG	2 cut(s)	34, 478
BstV1I	GCAGC	2 cut(s)	177, 460
BstV2I	GAAGAC	1 cut(s)	166
BstX2I	RGATCY	1 cut(s)	430
BstXI	CCANNNNNNTGG	1 cut(s)	441
BstYI	RGATCY	1 cut(s)	430
BsuRI	GGCC	1 cut(s)	85
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	510, 519
Cac8I	GCNNGC	1 cut(s)	513
CaiI	CAGNNNCTG	1 cut(s)	272
CfoI	GCGC	2 cut(s)	240, 478
Cfr13I	GGNCC	1 cut(s)	392
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	485
CviAII	CATG	2 cut(s)	48, 220
CviJI	RGCY	5 cut(s)	85, 265, 312, 473, 540
CviKI_1	RGCY	5 cut(s)	85, 265, 312, 473, 540
CviQI	GTAC	1 cut(s)	485
DpnI	GATC	2 cut(s)	128, 432
DpnII	GATC	2 cut(s)	126, 430
EaeI	YGGCCR	1 cut(s)	83
Eco130I	CCWWGG	1 cut(s)	47
Eco31I	GGTCTC	1 cut(s)	522
Eco32I	GATATC	1 cut(s)	460
Eco47I	GGWCC	1 cut(s)	392
Eco57I	CTGAAG	1 cut(s)	45
EcoRII	CCWGG	1 cut(s)	440
EcoRV	GATATC	1 cut(s)	460
EcoT14I	CCWWGG	1 cut(s)	47
EcoT22I	ATGCAT	1 cut(s)	107
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	2 cut(s)	51, 223
FaiI	YATR	7 cut(s)	49, 198, 221, 245, 365, 375, 597
FaqI	GGGAC	2 cut(s)	34, 378
FatI	CATG	2 cut(s)	47, 219
Fnu4HI	GCNGC	3 cut(s)	166, 169, 474
FokI	GGATG	2 cut(s)	506, 517
Fsp4HI	GCNGC	3 cut(s)	166, 169, 474
FspBI	CTAG	1 cut(s)	368
GlaI	GCGC	2 cut(s)	239, 477
GluI	GCNGC	3 cut(s)	166, 169, 474
HaeII	RGCGCY	1 cut(s)	241
HaeIII	GGCC	1 cut(s)	85
HapII	CCGG	1 cut(s)	426
HgaI	GACGC	1 cut(s)	160
HhaI	GCGC	2 cut(s)	240, 478
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	2 cut(s)	51, 223
Hin6I	GCGC	2 cut(s)	238, 476
HinP1I	GCGC	2 cut(s)	238, 476
HindIII	AAGCTT	1 cut(s)	538
HinfI	GANTC	2 cut(s)	269, 577
HpaII	CCGG	1 cut(s)	426
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	2 cut(s)	187, 485
Hpy188I	TCNGA	4 cut(s)	131, 181, 258, 573
Hpy188III	TCNNGA	1 cut(s)	553
Hpy8I	GTNNAC	2 cut(s)	187, 485
Hpy99I	CGWCG	3 cut(s)	146, 185, 212
HpyAV	CCTTC	2 cut(s)	89, 344
HpyCH4III	ACNGT	3 cut(s)	294, 362, 453
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	3 cut(s)	105, 230, 465
HpyF10VI	GCNNNNNNNGC	1 cut(s)	309
HpySE526I	ACGT	1 cut(s)	183
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	2 cut(s)	51, 223
HspAI	GCGC	2 cut(s)	238, 476
Kzo9I	GATC	2 cut(s)	126, 430
Lsp1109I	GCAGC	2 cut(s)	177, 460
MaeI	CTAG	1 cut(s)	368
MaeII	ACGT	1 cut(s)	183
MalI	GATC	2 cut(s)	128, 432
MboI	GATC	2 cut(s)	126, 430
MboII	GAAGA	5 cut(s)	31, 64, 166, 359, 457
MflI	RGATCY	1 cut(s)	430
MlsI	TGGCCA	1 cut(s)	85
MluNI	TGGCCA	1 cut(s)	85
MlyI	GAGTC	1 cut(s)	278
MmeI	TCCRAC	3 cut(s)	204, 435, 607
MnlI	CCTC	2 cut(s)	332, 503
Mox20I	TGGCCA	1 cut(s)	85
Mph1103I	ATGCAT	1 cut(s)	107
MscI	TGGCCA	1 cut(s)	85
MseI	TTAA	1 cut(s)	204
MslI	CAYNNNNRTG	1 cut(s)	503
Msp20I	TGGCCA	1 cut(s)	85
MspA1I	CMGCKG	1 cut(s)	168
MspI	CCGG	1 cut(s)	426
MspR9I	CCNGG	1 cut(s)	442
Mva1269I	GAATGC	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	442
MvnI	CGCG	2 cut(s)	34, 478
MwoI	GCNNNNNNNGC	1 cut(s)	309
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	2 cut(s)	126, 430
NlaIII	CATG	2 cut(s)	51, 223
NlaIV	GGNNCC	2 cut(s)	214, 394
NmeAIII	GCCGAG	1 cut(s)	141
NsiI	ATGCAT	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PctI	GAATGC	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	577
PfoI	TCCNGGA	1 cut(s)	440
PkrI	GCNGC	3 cut(s)	167, 170, 475
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
PshAI	GACNNNNGTC	1 cut(s)	26
PsiI	TTATAA	1 cut(s)	245
Psp6I	CCWGG	1 cut(s)	440
PspGI	CCWGG	1 cut(s)	440
PspN4I	GGNNCC	2 cut(s)	214, 394
PspPI	GGNCC	1 cut(s)	392
PstNI	CAGNNNCTG	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	430
RsaI	GTAC	1 cut(s)	486
RsaNI	GTAC	1 cut(s)	485
RseI	CAYNNNNRTG	1 cut(s)	503
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	3 cut(s)	166, 169, 474
Sau3AI	GATC	2 cut(s)	126, 430
Sau96I	GGNCC	1 cut(s)	392
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	442
SetI	ASST	5 cut(s)	186, 324, 495, 534, 542
SinI	GGWCC	1 cut(s)	392
SmiMI	CAYNNNNRTG	1 cut(s)	503
SsiI	CCGC	2 cut(s)	168, 423
SspMI	CTAG	1 cut(s)	368
StyD4I	CCNGG	1 cut(s)	440
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	3 cut(s)	294, 362, 453
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	2 cut(s)	109, 279
TaqII	GACCGA	1 cut(s)	155
TatI	WGTACW	1 cut(s)	484
TauI	GCSGC	1 cut(s)	171
TfiI	GAWTC	1 cut(s)	577
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TseI	GCWGC	2 cut(s)	165, 473
TspDTI	ATGAA	4 cut(s)	318, 322, 521, 590
TspGWI	ACGGA	2 cut(s)	225, 299
VpaK11BI	GGWCC	1 cut(s)	392
XspI	CTAG	1 cut(s)	368
Zsp2I	ATGCAT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.