Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0009726

Physical Location & Seq

Genomic Coordinates Forward (+)

24056459 .. 24057450

Gene Structure 992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g23490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTTTCGATGTGTGATGGGGCAGTCTGTCTCGCATTTCTTCTCTCTTCGGAAGAAGAAACAAAAAGATTGGGCGTTTCCAGAAGAACTATGCCGTCGTTTTACGTATGTCGAGATCAGTGCAGCAACTCAATGTTTCGACCAAACCTTATGTATTGGTAGTGGTGGCTTTGGCTCAGTATACAAAGGGCGTATTAAGGTCTATGGGGCTGAGGACAGGAAAGACGTCGTTGCAATCAAGCGCTTTTCCAGAGATTCAAAACAGGGAGTGCGTGAGTTCAGGGCGGAGGTACAGCTACTATGCCAGCTCCGCCATCCCAACCTCATCTCTCTCATCGGATTCTGCCAAGAAAATGGAGAGTGTATCATTGTATACGACTACATGCCCAACGGTTCCCTCTTTGATTACATCTTCGATACTTCCAGTTTTAAACAGAAAGATCCCCATCCCTTGACTTGGAAGCAAAGGCTGAAAATTTGTATTGGGGTGGCGCGTTCAATACACTACCTCCACACAGGGGTTAAGCATGCTGTCATCCATCGAGATGTGAAATGCTCCAACGTTCTATTGGACCAAAACTTGGTGCCCAAGCTTTCTGACTTCGGGTTGTCCAAGATGGGTCCTCCTACTTTGTCAAATGCATTAATCAGATTGAACTCCAATTATGCGGTGTTAGGTACATTCGGAAATCTGATGTCTTCTCATTCGGAGTGGTGTTATTCGAAATATTGTCTGCCAAACATGTTGAATAAGAAGAGTATCCAAGCTAACTCTAATGATCCCAAGAAGAAGAAAATAGACTCTAGGCTTTGTTTTTTCTTGGATGATATACAATGCTTGGGGACTTGGGTATTTATATTAAACCAAATGAAAGCTACACCACACACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

297

Amino Acids

33.86

Weight (kDa)

9.33

Isoelectric Point (pI)

34.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	51 - 206	2.5e-34	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	51 - 208	1.8e-30	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009726)

Species	Orthologous Gene IDs
malus_domestica	MD04G1237900.v1.1 MD04G1238200.v1.1 MD04G1238300.v1.1 MD04G1238400.v1.1 MD12G1256100.v1.1 MD12G1256200.v1.1 MD12G1256400.v1.1 MD12G1256500.v1.1
pyrus_communis	pycom02g03710 pycom04g21120 pycom04g21130 pycom12g23490 pycom12g23510 pycom17g22130
rosa_chinensis	RchiOBHm_Chr0c37g0502971 RchiOBHm_Chr6g0265111 RchiOBHm_Chr6g0265191
rosa_multiflora	Rmu_co8298979.1_g000001 Rmu_ssc0000359.1_g000070
rosa_samantha	Rh6AG136900 Rh6BG133800
rosa_wichuraiana	Rw6G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	228
AccB1I	GGYRCC	1 cut(s)	583
AccB7I	CCANNNNNTGG	1 cut(s)	580
AccI	GTMKAC	2 cut(s)	180, 372
AccII	CGCG	1 cut(s)	493
AciI	CCGC	3 cut(s)	284, 310, 668
AclI	AACGTT	1 cut(s)	561
AclWI	GGATC	2 cut(s)	434, 773
AcsI	RAATTY	1 cut(s)	474
AcyI	GRCGYC	1 cut(s)	225
AfaI	GTAC	2 cut(s)	291, 679
AfeI	AGCGCT	1 cut(s)	242
AfiI	CCNNNNNNNGG	3 cut(s)	456, 517, 580
AflIII	ACRYGT	1 cut(s)	741
AgsI	TTSAA	4 cut(s)	258, 498, 655, 748
AluBI	AGCT	5 cut(s)	295, 307, 592, 767, 875
AluI	AGCT	5 cut(s)	295, 307, 592, 767, 875
Alw26I	GTCTC	1 cut(s)	34
AlwI	GGATC	2 cut(s)	434, 773
Aor51HI	AGCGCT	1 cut(s)	242
ApeKI	GCWGC	1 cut(s)	122
ApoI	RAATTY	1 cut(s)	474
AseI	ATTAAT	1 cut(s)	644
AspLEI	GCGC	2 cut(s)	243, 493
AspS9I	GGNCC	2 cut(s)	571, 620
AsuII	TTCGAA	1 cut(s)	722
AvaII	GGWCC	2 cut(s)	571, 620
BaeGI	GKGCMC	1 cut(s)	588
BanI	GGYRCC	1 cut(s)	583
BbsI	GAAGAC	1 cut(s)	690
BbvCI	CCTCAGC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	134
BccI	CCATC	5 cut(s)	10, 321, 453, 546, 610
BceAI	ACGGC	1 cut(s)	78
BcgI	CGANNNNNNTGC	2 cut(s)	101, 135
BciVI	GTATCC	1 cut(s)	770
BcoDI	GTCTC	1 cut(s)	34
BfaI	CTAG	1 cut(s)	804
BfoI	RGCGCY	1 cut(s)	244
BfuI	GTATCC	1 cut(s)	770
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
Bme18I	GGWCC	2 cut(s)	571, 620
BmgT120I	GGNCC	2 cut(s)	571, 620
BmiI	GGNNCC	3 cut(s)	394, 585, 621
BpiI	GAAGAC	1 cut(s)	690
Bpu10I	CCTNAGC	1 cut(s)	210
Bpu14I	TTCGAA	1 cut(s)	722
BsaAI	YACGTR	1 cut(s)	105
BsaBI	GATNNNNATC	1 cut(s)	444
BsaHI	GRCGYC	1 cut(s)	225
BsaXI	ACNNNNNCTCC	2 cut(s)	492, 522
Bsc4I	CCNNNNNNNGG	3 cut(s)	456, 517, 580
Bse1I	ACTGG	1 cut(s)	423
Bse8I	GATNNNNATC	1 cut(s)	444
BseGI	GGATG	4 cut(s)	313, 445, 534, 829
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	3 cut(s)	456, 517, 580
BseMII	CTCAG	2 cut(s)	189, 201
BseNI	ACTGG	1 cut(s)	423
BseSI	GKGCMC	1 cut(s)	588
BseXI	GCAGC	1 cut(s)	134
BsgI	GTGCAG	1 cut(s)	141
Bsh1236I	CGCG	1 cut(s)	493
BshNI	GGYRCC	1 cut(s)	583
BslFI	GGGAC	1 cut(s)	856
BslI	CCNNNNNNNGG	3 cut(s)	456, 517, 580
BsmAI	GTCTC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	856
Bsp119I	TTCGAA	1 cut(s)	722
Bsp1286I	GDGCHC	1 cut(s)	588
Bsp143I	GATC	3 cut(s)	114, 439, 778
BspACI	CCGC	3 cut(s)	284, 310, 668
BspCNI	CTCAG	2 cut(s)	188, 202
BspFNI	CGCG	1 cut(s)	493
BspLI	GGNNCC	3 cut(s)	394, 585, 621
BspPI	GGATC	2 cut(s)	434, 773
BspT104I	TTCGAA	1 cut(s)	722
BspT107I	GGYRCC	1 cut(s)	583
BsrI	ACTGG	1 cut(s)	423
BssMI	GATC	3 cut(s)	114, 439, 778
BssNAI	GTATAC	2 cut(s)	181, 373
BssNI	GRCGYC	1 cut(s)	225
Bst1107I	GTATAC	2 cut(s)	181, 373
Bst4CI	ACNGT	1 cut(s)	392
Bst6I	CTCTTC	2 cut(s)	51, 749
BstACI	GRCGYC	1 cut(s)	225
BstBAI	YACGTR	1 cut(s)	105
BstBI	TTCGAA	1 cut(s)	722
BstC8I	GCNNGC	2 cut(s)	305, 528
BstDEI	CTNAG	2 cut(s)	175, 210
BstF5I	GGATG	4 cut(s)	313, 445, 534, 829
BstFNI	CGCG	1 cut(s)	493
BstH2I	RGCGCY	1 cut(s)	244
BstHHI	GCGC	2 cut(s)	243, 493
BstKTI	GATC	3 cut(s)	117, 442, 781
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	3 cut(s)	114, 439, 778
BstMWI	GCNNNNNNNGC	1 cut(s)	309
BstNSI	RCATGY	3 cut(s)	385, 530, 745
BstSLI	GKGCMC	1 cut(s)	588
BstSNI	TACGTA	1 cut(s)	105
BstUI	CGCG	1 cut(s)	493
BstV1I	GCAGC	1 cut(s)	134
BstV2I	GAAGAC	1 cut(s)	690
BstX2I	RGATCY	1 cut(s)	439
BstXI	CCANNNNNNTGG	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	439
BstZ17I	GTATAC	2 cut(s)	181, 373
BsuI	GTATCC	1 cut(s)	770
BtsCI	GGATG	4 cut(s)	313, 445, 534, 829
BtsIMutI	CAGTG	1 cut(s)	124
Cac8I	GCNNGC	2 cut(s)	305, 528
CfoI	GCGC	2 cut(s)	243, 493
Cfr13I	GGNCC	2 cut(s)	571, 620
Csp6I	GTAC	2 cut(s)	290, 678
CviAII	CATG	3 cut(s)	382, 527, 742
CviQI	GTAC	2 cut(s)	290, 678
DdeI	CTNAG	2 cut(s)	175, 210
DpnI	GATC	3 cut(s)	116, 441, 780
DpnII	GATC	3 cut(s)	114, 439, 778
DraI	TTTAAA	1 cut(s)	430
Eam1104I	CTCTTC	2 cut(s)	51, 749
EarI	CTCTTC	2 cut(s)	51, 749
EciI	GGCGGA	2 cut(s)	299, 299
Eco105I	TACGTA	1 cut(s)	105
Eco47I	GGWCC	2 cut(s)	571, 620
Eco47III	AGCGCT	1 cut(s)	242
EcoO109I	RGGNCCY	1 cut(s)	620
EcoT22I	ATGCAT	1 cut(s)	643
FaeI	CATG	3 cut(s)	385, 530, 745
FaqI	GGGAC	1 cut(s)	856
FatI	CATG	3 cut(s)	381, 526, 741
FblI	GTMKAC	2 cut(s)	180, 372
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	4 cut(s)	300, 432, 521, 836
Fsp4HI	GCNGC	1 cut(s)	123
FspBI	CTAG	1 cut(s)	804
GlaI	GCGC	2 cut(s)	242, 492
GluI	GCNGC	1 cut(s)	123
HaeII	RGCGCY	1 cut(s)	244
HhaI	GCGC	2 cut(s)	243, 493
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	3 cut(s)	385, 530, 745
Hin6I	GCGC	2 cut(s)	241, 491
HinP1I	GCGC	2 cut(s)	241, 491
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	3 cut(s)	254, 339, 800
Hpy166II	GTNNAC	2 cut(s)	181, 373
Hpy188I	TCNGA	7 cut(s)	51, 338, 598, 650, 686, 693, 709
Hpy188III	TCNNGA	4 cut(s)	80, 112, 249, 542
Hpy8I	GTNNAC	2 cut(s)	181, 373
Hpy99I	CGWCG	2 cut(s)	99, 230
HpyCH4III	ACNGT	1 cut(s)	392
HpyCH4IV	ACGT	3 cut(s)	104, 225, 561
HpyCH4V	TGCA	3 cut(s)	122, 233, 641
HpyF10VI	GCNNNNNNNGC	1 cut(s)	309
HpyF3I	CTNAG	2 cut(s)	175, 210
HpySE526I	ACGT	3 cut(s)	104, 225, 561
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	3 cut(s)	385, 530, 745
HspAI	GCGC	2 cut(s)	241, 491
Kzo9I	GATC	3 cut(s)	114, 439, 778
LmnI	GCTCC	2 cut(s)	312, 560
LpnPI	CCDG	8 cut(s)	93, 202, 248, 262, 265, 317, 436, 501
Lsp1109I	GCAGC	1 cut(s)	134
MaeI	CTAG	1 cut(s)	804
MaeII	ACGT	3 cut(s)	104, 225, 561
MalI	GATC	3 cut(s)	116, 441, 780
MboI	GATC	3 cut(s)	114, 439, 778
MflI	RGATCY	1 cut(s)	439
MhlI	GDGCHC	1 cut(s)	588
MluCI	AATT	2 cut(s)	474, 661
MlyI	GAGTC	1 cut(s)	794
MmeI	TCCRAC	1 cut(s)	582
MnlI	CCTC	6 cut(s)	205, 280, 332, 407, 518, 633
Mph1103I	ATGCAT	1 cut(s)	643
MseI	TTAA	6 cut(s)	195, 429, 522, 644, 860, 889
MslI	CAYNNNNRTG	1 cut(s)	543
MvnI	CGCG	1 cut(s)	493
MwoI	GCNNNNNNNGC	1 cut(s)	309
NdeII	GATC	3 cut(s)	114, 439, 778
NlaIII	CATG	3 cut(s)	385, 530, 745
NlaIV	GGNNCC	3 cut(s)	394, 585, 621
NsiI	ATGCAT	1 cut(s)	643
NspI	RCATGY	3 cut(s)	385, 530, 745
NspV	TTCGAA	1 cut(s)	722
PaeI	GCATGC	1 cut(s)	530
PciI	ACATGT	1 cut(s)	741
PfeI	GAWTC	2 cut(s)	254, 339
PflMI	CCANNNNNTGG	1 cut(s)	580
PkrI	GCNGC	1 cut(s)	124
PleI	GAGTC	1 cut(s)	794
PpsI	GAGTC	1 cut(s)	794
Ppu21I	YACGTR	1 cut(s)	105
PpuMI	RGGWCCY	1 cut(s)	620
PscI	ACATGT	1 cut(s)	741
PshBI	ATTAAT	1 cut(s)	644
Psp1406I	AACGTT	1 cut(s)	561
Psp5II	RGGWCCY	1 cut(s)	620
PspN4I	GGNNCC	3 cut(s)	394, 585, 621
PspPI	GGNCC	2 cut(s)	571, 620
PspPPI	RGGWCCY	1 cut(s)	620
PsuI	RGATCY	1 cut(s)	439
RsaI	GTAC	2 cut(s)	291, 679
RsaNI	GTAC	2 cut(s)	290, 678
RseI	CAYNNNNRTG	1 cut(s)	543
SaqAI	TTAA	6 cut(s)	195, 429, 522, 644, 860, 889
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	3 cut(s)	114, 439, 778
Sau96I	GGNCC	2 cut(s)	571, 620
SchI	GAGTC	1 cut(s)	794
SduI	GDGCHC	1 cut(s)	588
SfuI	TTCGAA	1 cut(s)	722
SinI	GGWCC	2 cut(s)	571, 620
SmiMI	CAYNNNNRTG	1 cut(s)	543
SnaBI	TACGTA	1 cut(s)	105
SphI	GCATGC	1 cut(s)	530
Sse9I	AATT	2 cut(s)	474, 661
SsiI	CCGC	3 cut(s)	284, 310, 668
SspI	AATATT	1 cut(s)	728
SspMI	CTAG	1 cut(s)	804
TaaI	ACNGT	1 cut(s)	392
TaiI	ACGT	3 cut(s)	107, 228, 564
TaqI	TCGA	6 cut(s)	7, 111, 138, 414, 541, 722
TasI	AATT	2 cut(s)	474, 661
TfiI	GAWTC	2 cut(s)	254, 339
Tru1I	TTAA	6 cut(s)	195, 429, 522, 644, 860, 889
Tru9I	TTAA	6 cut(s)	195, 429, 522, 644, 860, 889
TscAI	CASTG	1 cut(s)	124
TseI	GCWGC	1 cut(s)	122
TspDTI	ATGAA	1 cut(s)	884
TspRI	CASTG	1 cut(s)	124
Van91I	CCANNNNNTGG	1 cut(s)	580
VpaK11BI	GGWCC	2 cut(s)	571, 620
VspI	ATTAAT	1 cut(s)	644
XapI	RAATTY	1 cut(s)	474
XceI	RCATGY	3 cut(s)	385, 530, 745
XcmI	CCANNNNNNNNNTGG	1 cut(s)	565
XmiI	GTMKAC	2 cut(s)	180, 372
XspI	CTAG	1 cut(s)	804
ZraI	GACGTC	1 cut(s)	226
Zsp2I	ATGCAT	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.