Rh6BG133800

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0009726
Physical Location & Seq
Forward (+)
20959760 .. 20961606
1847 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG133800.1

Sequence Viewer

Length: 1179 bp
ATGGGGTTTCTTCCTTCTGAGACTCAAGTCTCGCGTTTCTTCTTTCCATGGAAGAAAACAAAACCAAAAAAACTCCAAAACTGGCCATTCACCGAAGGAAAATGCATTCGATTTTCACTAAATGAGATCAGAACAGCGACCAACTACTTCAACTTGCGTCTCGGCAGTGGCGCCTTCTGCGACGTTTACAAAGGGCATATTATTACCAACGGAACCCGCATGGATGTTGTAATCAAGTGCCTTAAAAAAGATAATCAGATACAGCCAGAGTCTGCGTTTGAGACAGAGATATTGTTGTTCTGCCAGTTGCGCCATCCTAACCTAGTTTCATTCATCGGATTTTGCGAAGAAGGAGATGACCGTATGCTAGTTTATGAGTTCCTTGACAATGGTCCCTTGTCTAATCATCTCTTCGGCAAGACTCTCGGAGATCCACTCTCCTGGAAGAAACGGCTGGATATCTGCATCGGGGCTGCGCGTGGTGTACATTACCTCCACACAGGGATTAAGCATGCCATTATCCACAGAGACCTGAAAAGTTTCAACATTCTATTGGACAAAGACTTGGTGCCCAAGCTTTCTGCCTTGGGGCTGTCCAAATTGGGCGGTACTAATGTGAAAAATAAACTCGACAAAGCTCCATCAAGGAAGACGGGTACACTAGGGTATGCAGATCCGGAGTATCTGGAATCGGGAAACGTTACTCAAAAATCTGATGTCTTTGCTTTTGGAGTGGTGTTATTTGAAGTCTTGTGTGTTAGAAGTTCAGCAAAGTTTAAAGAATGCATGGATGGGACTTCACTCTTTGATATCATTGATCCATACTTGAAGGGCAAAATAGCTCCAGACTGTTTGAGAAAATTTGTGGACATTGCCGAGAGATGTGTGCGTCGAACGGGAGCCCAACGACCAACAATGGGTGAAGTGGAGGTAGAACTTGAGGATGCATTGGAGCTGCAGGAAAAGTCGGATTCTAGCAAAAACTTGGAGACAAGCACCTCTATTGCTCCTGCCCATCATAACTATACCTACGACGGGATGACATTTCGGACCATCAAGGATATTTTTTTCTGGTTTGCGGAAGACACTCTTTCAAATAATTTTACCACTTACCTATCTGAAAACAATACTACCGTATTTTCTGACAAGTCCACGATCATTATGAAAAAGAAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169
Pfam Domains
Protein Families
Pkinase_Tyr

Protein Analysis

392

Amino Acids

44.44

Weight (kDa)

8.65

Isoelectric Point (pI)

28.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 53 - 312 7.4e-46 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 53 - 309 1.6e-36 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 170, 568
AccII CGCG 2 cut(s) 34, 478
AccIII TCCGGA 1 cut(s) 676
AciI CCGC 3 cut(s) 217, 606, 1079
AclI AACGTT 1 cut(s) 699
AclWI GGATC 3 cut(s) 425, 668, 812
AcoI YGGCCR 1 cut(s) 83
AcsI RAATTY 1 cut(s) 860
AcyI GRCGYC 1 cut(s) 171
AfaI GTAC 3 cut(s) 486, 610, 658
AfiI CCNNNNNNNGG 2 cut(s) 917, 1035
AgsI TTSAA 5 cut(s) 151, 544, 746, 829, 1095
AjnI CCWGG 1 cut(s) 440
AluBI AGCT 4 cut(s) 577, 638, 842, 955
AluI AGCT 4 cut(s) 577, 638, 842, 955
Alw26I GTCTC 6 cut(s) 14, 34, 164, 275, 522, 983
AlwI GGATC 3 cut(s) 425, 668, 812
AlwNI CAGNNNCTG 1 cut(s) 272
Aor13HI TCCGGA 1 cut(s) 676
AoxI GGCC 1 cut(s) 83
ApeKI GCWGC 2 cut(s) 473, 955
ApoI RAATTY 1 cut(s) 860
Asp700I GAANNNNTTC 1 cut(s) 539
AspLEI GCGC 3 cut(s) 173, 312, 478
AspS9I GGNCC 2 cut(s) 392, 1050
AsuHPI GGTGA 2 cut(s) 82, 932
AvaII GGWCC 2 cut(s) 392, 1050
BaeGI GKGCMC 1 cut(s) 573
BaeI ACNNNNGTAYC 2 cut(s) 600, 633
BalI TGGCCA 1 cut(s) 85
BanI GGYRCC 2 cut(s) 170, 568
BanII GRGCYC 1 cut(s) 904
BbsI GAAGAC 2 cut(s) 656, 1089
BbvI GCAGC 2 cut(s) 460, 942
BccI CCATC 5 cut(s) 321, 649, 785, 1023, 1061
BceAI ACGGC 1 cut(s) 467
BcgI CGANNNNNNTGC 2 cut(s) 406, 440
BciT130I CCWGG 1 cut(s) 442
BcoDI GTCTC 6 cut(s) 14, 34, 164, 275, 522, 983
BfaI CTAG 4 cut(s) 323, 368, 662, 975
BfmI CTRYAG 1 cut(s) 956
BfoI RGCGCY 1 cut(s) 174
BisI GCNGC 2 cut(s) 474, 956
BlsI GCNGC 2 cut(s) 475, 957
Bme1390I CCNGG 1 cut(s) 442
Bme18I GGWCC 2 cut(s) 392, 1050
BmgT120I GGNCC 2 cut(s) 392, 1050
BmiI GGNNCC 5 cut(s) 172, 214, 394, 570, 901
BmrFI CCNGG 1 cut(s) 442
BmsI GCATC 2 cut(s) 474, 934
BoxI GACNNNNGTC 2 cut(s) 26, 390
BpiI GAAGAC 2 cut(s) 656, 1089
BplI GAGNNNNNCTC 2 cut(s) 420, 452
BpmI CTGGAG 1 cut(s) 828
BpuEI CTTGAG 2 cut(s) 9, 959
BsaHI GRCGYC 1 cut(s) 171
BsaI GGTCTC 1 cut(s) 522
BsaJI CCNNGG 2 cut(s) 47, 585
BsaWI WCCGGW 1 cut(s) 676
BsaXI ACNNNNNCTCC 2 cut(s) 477, 507
Bsc4I CCNNNNNNNGG 2 cut(s) 917, 1035
Bse1I ACTGG 2 cut(s) 86, 304
Bse3DI GCAATG 1 cut(s) 870
BseAI TCCGGA 1 cut(s) 676
BseBI CCWGG 1 cut(s) 442
BseDI CCNNGG 2 cut(s) 47, 585
BseGI GGATG 5 cut(s) 229, 313, 796, 949, 1044
BseLI CCNNNNNNNGG 2 cut(s) 917, 1035
BseMI GCAATG 1 cut(s) 870
BseMII CTCAG 1 cut(s) 9
BseNI ACTGG 2 cut(s) 86, 304
BseSI GKGCMC 1 cut(s) 573
BseXI GCAGC 2 cut(s) 460, 942
Bsh1236I CGCG 2 cut(s) 34, 478
BshFI GGCC 1 cut(s) 85
BshNI GGYRCC 2 cut(s) 170, 568
BsiSI CCGG 1 cut(s) 677
BslFI GGGAC 2 cut(s) 378, 808
BslI CCNNNNNNNGG 2 cut(s) 917, 1035
BsmAI GTCTC 6 cut(s) 14, 34, 164, 275, 522, 983
BsmBI CGTCTC 1 cut(s) 164
BsmFI GGGAC 2 cut(s) 378, 808
BsmI GAATGC 2 cut(s) 105, 788
BsnI GGCC 1 cut(s) 85
Bso31I GGTCTC 1 cut(s) 522
Bsp1286I GDGCHC 2 cut(s) 573, 904
Bsp13I TCCGGA 1 cut(s) 676
Bsp1407I TGTACA 1 cut(s) 484
Bsp143I GATC 5 cut(s) 126, 430, 673, 817, 1155
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 3 cut(s) 217, 606, 1079
BspANI GGCC 1 cut(s) 85
BspCNI CTCAG 1 cut(s) 10
BspEI TCCGGA 1 cut(s) 676
BspFNI CGCG 2 cut(s) 34, 478
BspLI GGNNCC 5 cut(s) 172, 214, 394, 570, 901
BspMAI CTGCAG 1 cut(s) 960
BspPI GGATC 3 cut(s) 425, 668, 812
BspT107I GGYRCC 2 cut(s) 170, 568
BspTNI GGTCTC 1 cut(s) 522
BsrDI GCAATG 1 cut(s) 870
BsrGI TGTACA 1 cut(s) 484
BsrI ACTGG 2 cut(s) 86, 304
BssECI CCNNGG 2 cut(s) 47, 585
BssMI GATC 5 cut(s) 126, 430, 673, 817, 1155
BssNI GRCGYC 1 cut(s) 171
BssT1I CCWWGG 2 cut(s) 47, 585
Bst2UI CCWGG 1 cut(s) 442
Bst4CI ACNGT 3 cut(s) 362, 851, 1135
Bst6I CTCTTC 1 cut(s) 416
BstACI GRCGYC 1 cut(s) 171
BstAUI TGTACA 1 cut(s) 484
BstC8I GCNNGC 1 cut(s) 513
BstDEI CTNAG 1 cut(s) 18
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 5 cut(s) 229, 313, 796, 949, 1044
BstFNI CGCG 2 cut(s) 34, 478
BstH2I RGCGCY 1 cut(s) 174
BstHHI GCGC 3 cut(s) 173, 312, 478
BstKTI GATC 5 cut(s) 129, 433, 676, 820, 1158
BstMAI GTCTC 6 cut(s) 14, 34, 164, 275, 522, 983
BstMBI GATC 5 cut(s) 126, 430, 673, 817, 1155
BstMWI GCNNNNNNNGC 2 cut(s) 177, 309
BstNI CCWGG 1 cut(s) 442
BstNSI RCATGY 1 cut(s) 515
BstPAI GACNNNNGTC 2 cut(s) 26, 390
BstSCI CCNGG 1 cut(s) 440
BstSFI CTRYAG 1 cut(s) 956
BstSLI GKGCMC 1 cut(s) 573
BstUI CGCG 2 cut(s) 34, 478
BstV1I GCAGC 2 cut(s) 460, 942
BstV2I GAAGAC 2 cut(s) 656, 1089
BstX2I RGATCY 2 cut(s) 430, 673
BstXI CCANNNNNNTGG 1 cut(s) 441
BstYI RGATCY 2 cut(s) 430, 673
BsuRI GGCC 1 cut(s) 85
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 5 cut(s) 229, 313, 796, 949, 1044
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 172
Cac8I GCNNGC 1 cut(s) 513
CaiI CAGNNNCTG 1 cut(s) 272
CfoI GCGC 3 cut(s) 173, 312, 478
Cfr13I GGNCC 2 cut(s) 392, 1050
CseI GACGC 2 cut(s) 146, 878
Csp6I GTAC 3 cut(s) 485, 609, 657
CviAII CATG 4 cut(s) 48, 220, 512, 787
CviQI GTAC 3 cut(s) 485, 609, 657
DdeI CTNAG 1 cut(s) 18
DinI GGCGCC 1 cut(s) 172
DpnI GATC 5 cut(s) 128, 432, 675, 819, 1157
DpnII GATC 5 cut(s) 126, 430, 673, 817, 1155
DraI TTTAAA 1 cut(s) 778
EaeI YGGCCR 1 cut(s) 83
Eam1104I CTCTTC 1 cut(s) 416
EarI CTCTTC 1 cut(s) 416
Eco130I CCWWGG 2 cut(s) 47, 585
Eco24I GRGCYC 1 cut(s) 904
Eco31I GGTCTC 1 cut(s) 522
Eco32I GATATC 2 cut(s) 460, 811
Eco47I GGWCC 2 cut(s) 392, 1050
EcoRII CCWGG 1 cut(s) 440
EcoRV GATATC 2 cut(s) 460, 811
EcoT14I CCWWGG 2 cut(s) 47, 585
EcoT22I ATGCAT 3 cut(s) 107, 788, 949
EcoT38I GRGCYC 1 cut(s) 904
EgeI GGCGCC 1 cut(s) 172
EheI GGCGCC 1 cut(s) 172
ErhI CCWWGG 2 cut(s) 47, 585
Esp3I CGTCTC 1 cut(s) 164
FaeI CATG 4 cut(s) 51, 223, 515, 790
FalI AAGNNNNNCTT 2 cut(s) 1074, 1106
FaqI GGGAC 2 cut(s) 378, 808
FatI CATG 4 cut(s) 47, 219, 511, 786
FauI CCCGC 1 cut(s) 224
Fnu4HI GCNGC 2 cut(s) 474, 956
FokI GGATG 5 cut(s) 236, 300, 803, 956, 1051
FriOI GRGCYC 1 cut(s) 904
Fsp4HI GCNGC 2 cut(s) 474, 956
FspBI CTAG 4 cut(s) 323, 368, 662, 975
GlaI GCGC 3 cut(s) 172, 311, 477
GluI GCNGC 2 cut(s) 474, 956
GsuI CTGGAG 1 cut(s) 828
HaeII RGCGCY 1 cut(s) 174
HaeIII GGCC 1 cut(s) 85
HapII CCGG 1 cut(s) 677
HgaI GACGC 2 cut(s) 146, 878
HhaI GCGC 3 cut(s) 173, 312, 478
Hin1I GRCGYC 1 cut(s) 171
Hin1II CATG 4 cut(s) 51, 223, 515, 790
Hin6I GCGC 3 cut(s) 171, 310, 476
HinP1I GCGC 3 cut(s) 171, 310, 476
HindIII AAGCTT 1 cut(s) 575
HinfI GANTC 5 cut(s) 22, 269, 421, 689, 971
HpaII CCGG 1 cut(s) 677
HphI GGTGA 2 cut(s) 82, 932
Hpy166II GTNNAC 5 cut(s) 187, 485, 659, 868, 1152
Hpy188III TCNNGA 4 cut(s) 677, 686, 693, 845
Hpy8I GTNNAC 5 cut(s) 187, 485, 659, 868, 1152
Hpy99I CGWCG 3 cut(s) 185, 894, 1037
HpyAV CCTTC 5 cut(s) 24, 89, 184, 344, 823
HpyCH4III ACNGT 3 cut(s) 362, 851, 1135
HpyCH4IV ACGT 2 cut(s) 183, 699
HpyCH4V TGCA 6 cut(s) 105, 465, 671, 786, 947, 958
HpyF10VI GCNNNNNNNGC 2 cut(s) 177, 309
HpyF3I CTNAG 1 cut(s) 18
HpySE526I ACGT 2 cut(s) 183, 699
Hsp92I GRCGYC 1 cut(s) 171
Hsp92II CATG 4 cut(s) 51, 223, 515, 790
HspAI GCGC 3 cut(s) 171, 310, 476
KasI GGCGCC 1 cut(s) 170
Kpn2I TCCGGA 1 cut(s) 676
Kzo9I GATC 5 cut(s) 126, 430, 673, 817, 1155
LmnI GCTCC 5 cut(s) 643, 847, 899, 952, 1012
Lsp1109I GCAGC 2 cut(s) 460, 942
LweI GCATC 2 cut(s) 474, 934
MaeI CTAG 4 cut(s) 323, 368, 662, 975
MaeII ACGT 2 cut(s) 183, 699
MaeIII GTNAC 1 cut(s) 700
MalI GATC 5 cut(s) 128, 432, 675, 819, 1157
MboI GATC 5 cut(s) 126, 430, 673, 817, 1155
MboII GAAGA 7 cut(s) 31, 64, 359, 403, 457, 661, 1094
MflI RGATCY 2 cut(s) 430, 673
MhlI GDGCHC 2 cut(s) 573, 904
MlsI TGGCCA 1 cut(s) 85
MluCI AATT 3 cut(s) 599, 860, 1099
MluNI TGGCCA 1 cut(s) 85
Mly113I GGCGCC 1 cut(s) 171
MlyI GAGTC 3 cut(s) 16, 278, 415
MmeI TCCRAC 1 cut(s) 948
MnlI CCTC 4 cut(s) 503, 922, 934, 1009
Mox20I TGGCCA 1 cut(s) 85
Mph1103I ATGCAT 3 cut(s) 107, 788, 949
MroI TCCGGA 1 cut(s) 676
MroXI GAANNNNTTC 1 cut(s) 539
MscI TGGCCA 1 cut(s) 85
MseI TTAA 3 cut(s) 243, 507, 777
Msp20I TGGCCA 1 cut(s) 85
MspI CCGG 1 cut(s) 677
MspR9I CCNGG 1 cut(s) 442
Mva1269I GAATGC 2 cut(s) 105, 788
MvaI CCWGG 1 cut(s) 442
MvnI CGCG 2 cut(s) 34, 478
MwoI GCNNNNNNNGC 2 cut(s) 177, 309
NarI GGCGCC 1 cut(s) 171
NcoI CCATGG 1 cut(s) 47
NdeII GATC 5 cut(s) 126, 430, 673, 817, 1155
NlaIII CATG 4 cut(s) 51, 223, 515, 790
NlaIV GGNNCC 5 cut(s) 172, 214, 394, 570, 901
NmeAIII GCCGAG 2 cut(s) 141, 901
NsiI ATGCAT 3 cut(s) 107, 788, 949
NspI RCATGY 1 cut(s) 515
PaeI GCATGC 1 cut(s) 515
PcsI WCGNNNNNNNCGW 1 cut(s) 342
PctI GAATGC 2 cut(s) 105, 788
PdmI GAANNNNTTC 1 cut(s) 539
PfeI GAWTC 2 cut(s) 689, 971
PfoI TCCNGGA 1 cut(s) 440
PkrI GCNGC 2 cut(s) 475, 957
PleI GAGTC 3 cut(s) 16, 277, 415
PluTI GGCGCC 1 cut(s) 174
PpsI GAGTC 3 cut(s) 16, 277, 415
PshAI GACNNNNGTC 2 cut(s) 26, 390
Psp1406I AACGTT 1 cut(s) 699
Psp6I CCWGG 1 cut(s) 440
PspGI CCWGG 1 cut(s) 440
PspN4I GGNNCC 5 cut(s) 172, 214, 394, 570, 901
PspPI GGNCC 2 cut(s) 392, 1050
PstI CTGCAG 1 cut(s) 960
PstNI CAGNNNCTG 1 cut(s) 272
PsuI RGATCY 2 cut(s) 430, 673
RsaI GTAC 3 cut(s) 486, 610, 658
RsaNI GTAC 3 cut(s) 485, 609, 657
SaqAI TTAA 3 cut(s) 243, 507, 777
SatI GCNGC 2 cut(s) 474, 956
Sau3AI GATC 5 cut(s) 126, 430, 673, 817, 1155
Sau96I GGNCC 2 cut(s) 392, 1050
SchI GAGTC 3 cut(s) 16, 278, 415
ScrFI CCNGG 1 cut(s) 442
SduI GDGCHC 2 cut(s) 573, 904
SfaNI GCATC 2 cut(s) 474, 934
SfcI CTRYAG 1 cut(s) 956
SfoI GGCGCC 1 cut(s) 172
SinI GGWCC 2 cut(s) 392, 1050
SmlI CTYRAG 2 cut(s) 24, 938
SmoI CTYRAG 2 cut(s) 24, 938
SphI GCATGC 1 cut(s) 515
Sse9I AATT 3 cut(s) 599, 860, 1099
SsiI CCGC 3 cut(s) 217, 606, 1079
SspDI GGCGCC 1 cut(s) 170
SspMI CTAG 4 cut(s) 323, 368, 662, 975
StyD4I CCNGG 1 cut(s) 440
StyI CCWWGG 2 cut(s) 47, 585
TaaI ACNGT 3 cut(s) 362, 851, 1135
TaiI ACGT 2 cut(s) 186, 702
TaqI TCGA 3 cut(s) 109, 630, 892
TasI AATT 3 cut(s) 599, 860, 1099
TatI WGTACW 1 cut(s) 484
TfiI GAWTC 2 cut(s) 689, 971
Tru1I TTAA 3 cut(s) 243, 507, 777
Tru9I TTAA 3 cut(s) 243, 507, 777
TscAI CASTG 1 cut(s) 172
TseI GCWGC 2 cut(s) 473, 955
TspDTI ATGAA 3 cut(s) 318, 322, 1178
TspGWI ACGGA 1 cut(s) 225
TspRI CASTG 1 cut(s) 172
VpaK11BI GGWCC 2 cut(s) 392, 1050
XapI RAATTY 1 cut(s) 860
XceI RCATGY 1 cut(s) 515
XmnI GAANNNNTTC 1 cut(s) 539
XspI CTAG 4 cut(s) 323, 368, 662, 975
Zsp2I ATGCAT 3 cut(s) 107, 788, 949
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.