Rw6G011810

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0009726
Physical Location & Seq
Forward (+)
21003015 .. 21006260
3246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G011810.1

Sequence Viewer

Length: 1158 bp
ATGGGGTTTCTTGCTTCTGGGACTGAAGTCTCGCGTTTCTTCTTTCCATGGAAGAAAACAAAACCCAAAAAACTGCAAAACTGGCCATTCACCGAAGGAAAATGCATTCGATTTTCACTAAATGAGATCAGAACAGCGACCGACGACTTCAAGGAGTATCTCGGCAGCGGCGTCTTCTCCGACGTTTACAAAGGGCATATTATTAACGACGGAACCAGCATGGTTGTTGCAATCAAGCGCCTTATAAAAGATAATCAGATACAGCCAGAGTCTGCGTTCGACACGGAGATACTGTTGTTCTGCCAGTTGAGCCACCCTAACCTCGTTTCATTCATTGGATTTTGCGAAGAAGGAGATGACCGTATGCTAGTTTATGAGTTCCTTGATAATGGTCCCTTGTCTAATCATCTTTTCGGCAAGACCGCCGGAGATCCACTCTCCTGGAAGAAACGCTTGGATATCTGCATTGGGGCTGCGCGTGGTGTACATTACCTCCACACAGGGATGAAGCGTGCCATCATCCACAGAGACCTAAAAAGCTTTAACATTCTATTGGACAAGGACATGGTGCCCAAGCTTTCTGCCTTAGGGCTGGGCAAGTTGGGCGGCACTAATGTGAAAAATAAACTCAACAAAGCTTCATCAAGGAAGGCGGGTACACTAGGATATGCAGATCCGGAGTATCTGGAATCGGGAAACGTTACTCATAAATCTGATGTCTTTGCTTTTGGAGTGGTATTATTTGAAGTCTTGTGTGTTAGAAGTGCAGCAGAGTTTATACAATGCATGGATGGGACTTTACTCTTTGATATCATTGATCCATACTTGAAGGGCAAAATAGCTCCGGACTGTTTGAGAAAATTTGTGGATATTGCCGAGAGATGTGTGCGTCGAACGGGAGCCCAACGACCAACGATAGGTGAAGTGGAGGTAGAACTTGAGGATGCATTGGAGCTGCAGGAAAAGTCGGATTCCAGCAAAAACTTGGAGACAAGCACTTCTATTTCTCCTGCCCATCAGGACTATACCTACGACGGGATGACATTTCGGACCATCAAGGATATTTTTTTCTGGTTAGAGGAAGGCGCCCTTACAAATTTAGTATCTACTAATTCTCACTTAACTGCGCACCTTCCATTACTCACCTATTTTCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169
Pfam Domains
Protein Families
Pkinase_Tyr

Protein Analysis

385

Amino Acids

43.23

Weight (kDa)

6.57

Isoelectric Point (pI)

29.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 50 - 311 9.2e-44 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 51 - 309 8.6e-37 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 245
Acc16I TGCGCA 1 cut(s) 1128
AccB1I GGYRCC 2 cut(s) 568, 1085
AccII CGCG 2 cut(s) 34, 478
AccIII TCCGGA 2 cut(s) 676, 844
AciI CCGC 4 cut(s) 168, 423, 606, 653
AclI AACGTT 1 cut(s) 699
AclWI GGATC 3 cut(s) 425, 668, 812
AcoI YGGCCR 1 cut(s) 83
AcsI RAATTY 2 cut(s) 860, 1096
AcuI CTGAAG 1 cut(s) 45
AcyI GRCGYC 2 cut(s) 171, 1086
AfaI GTAC 2 cut(s) 486, 658
AfiI CCNNNNNNNGG 2 cut(s) 917, 1035
AgsI TTSAA 3 cut(s) 151, 746, 829
AjnI CCWGG 1 cut(s) 440
AjuI GAANNNNNNNTTGG 2 cut(s) 437, 469
AleI CACNNNNGTG 1 cut(s) 614
AluBI AGCT 5 cut(s) 540, 577, 638, 842, 955
AluI AGCT 5 cut(s) 540, 577, 638, 842, 955
Alw26I GTCTC 3 cut(s) 34, 522, 983
AlwI GGATC 3 cut(s) 425, 668, 812
AlwNI CAGNNNCTG 1 cut(s) 272
Aor13HI TCCGGA 2 cut(s) 676, 844
AoxI GGCC 1 cut(s) 83
ApeKI GCWGC 4 cut(s) 165, 473, 767, 955
ApoI RAATTY 2 cut(s) 860, 1096
AspLEI GCGC 4 cut(s) 240, 478, 1088, 1129
AspS9I GGNCC 2 cut(s) 392, 1050
AsuHPI GGTGA 3 cut(s) 82, 932, 1135
AvaII GGWCC 2 cut(s) 392, 1050
AxyI CCTNAGG 1 cut(s) 586
BaeGI GKGCMC 1 cut(s) 573
BaeI ACNNNNGTAYC 2 cut(s) 281, 314
BalI TGGCCA 1 cut(s) 85
BanI GGYRCC 2 cut(s) 568, 1085
BanII GRGCYC 1 cut(s) 904
BbsI GAAGAC 1 cut(s) 166
BbvI GCAGC 4 cut(s) 177, 460, 779, 942
BccI CCATC 4 cut(s) 524, 785, 1023, 1061
BciT130I CCWGG 1 cut(s) 442
BcoDI GTCTC 3 cut(s) 34, 522, 983
BfaI CTAG 2 cut(s) 368, 662
BfmI CTRYAG 1 cut(s) 956
BfoI RGCGCY 2 cut(s) 241, 1089
BisI GCNGC 6 cut(s) 166, 169, 474, 607, 768, 956
BlsI GCNGC 6 cut(s) 167, 170, 475, 608, 769, 957
Bme1390I CCNGG 1 cut(s) 442
Bme18I GGWCC 2 cut(s) 392, 1050
BmgT120I GGNCC 2 cut(s) 392, 1050
BmiI GGNNCC 5 cut(s) 214, 394, 570, 901, 1087
BmrFI CCNGG 1 cut(s) 442
BmsI GCATC 1 cut(s) 934
BoxI GACNNNNGTC 1 cut(s) 26
BpiI GAAGAC 1 cut(s) 166
BplI GAGNNNNNCTC 2 cut(s) 420, 452
BpuEI CTTGAG 1 cut(s) 959
BsaHI GRCGYC 2 cut(s) 171, 1086
BsaI GGTCTC 1 cut(s) 522
BsaJI CCNNGG 1 cut(s) 47
BsaWI WCCGGW 2 cut(s) 676, 844
BsaXI ACNNNNNCTCC 4 cut(s) 278, 308, 477, 507
Bsc4I CCNNNNNNNGG 2 cut(s) 917, 1035
Bse1I ACTGG 2 cut(s) 86, 304
Bse21I CCTNAGG 1 cut(s) 586
BseAI TCCGGA 2 cut(s) 676, 844
BseBI CCWGG 1 cut(s) 442
BseDI CCNNGG 1 cut(s) 47
BseGI GGATG 5 cut(s) 510, 519, 796, 949, 1044
BseLI CCNNNNNNNGG 2 cut(s) 917, 1035
BseNI ACTGG 2 cut(s) 86, 304
BseSI GKGCMC 1 cut(s) 573
BseXI GCAGC 4 cut(s) 177, 460, 779, 942
BseYI CCCAGC 1 cut(s) 592
BsgI GTGCAG 1 cut(s) 786
Bsh1236I CGCG 2 cut(s) 34, 478
Bsh1285I CGRYCG 1 cut(s) 141
BshFI GGCC 1 cut(s) 85
BshNI GGYRCC 2 cut(s) 568, 1085
BsiEI CGRYCG 1 cut(s) 141
BsiSI CCGG 3 cut(s) 426, 677, 845
BslFI GGGAC 3 cut(s) 34, 378, 808
BslI CCNNNNNNNGG 2 cut(s) 917, 1035
BsmAI GTCTC 3 cut(s) 34, 522, 983
BsmFI GGGAC 3 cut(s) 34, 378, 808
BsmI GAATGC 1 cut(s) 105
BsnI GGCC 1 cut(s) 85
Bso31I GGTCTC 1 cut(s) 522
Bsp1286I GDGCHC 2 cut(s) 573, 904
Bsp13I TCCGGA 2 cut(s) 676, 844
Bsp1407I TGTACA 1 cut(s) 484
Bsp143I GATC 4 cut(s) 126, 430, 673, 817
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 4 cut(s) 168, 423, 606, 653
BspANI GGCC 1 cut(s) 85
BspEI TCCGGA 2 cut(s) 676, 844
BspFNI CGCG 2 cut(s) 34, 478
BspLI GGNNCC 5 cut(s) 214, 394, 570, 901, 1087
BspMAI CTGCAG 1 cut(s) 960
BspPI GGATC 3 cut(s) 425, 668, 812
BspT107I GGYRCC 2 cut(s) 568, 1085
BspTNI GGTCTC 1 cut(s) 522
BsrGI TGTACA 1 cut(s) 484
BsrI ACTGG 2 cut(s) 86, 304
BssECI CCNNGG 1 cut(s) 47
BssMI GATC 4 cut(s) 126, 430, 673, 817
BssNI GRCGYC 2 cut(s) 171, 1086
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 442
Bst4CI ACNGT 3 cut(s) 294, 362, 851
BstACI GRCGYC 2 cut(s) 171, 1086
BstAUI TGTACA 1 cut(s) 484
BstC8I GCNNGC 1 cut(s) 513
BstDEI CTNAG 1 cut(s) 586
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 5 cut(s) 510, 519, 796, 949, 1044
BstFNI CGCG 2 cut(s) 34, 478
BstH2I RGCGCY 2 cut(s) 241, 1089
BstHHI GCGC 4 cut(s) 240, 478, 1088, 1129
BstKTI GATC 4 cut(s) 129, 433, 676, 820
BstMAI GTCTC 3 cut(s) 34, 522, 983
BstMBI GATC 4 cut(s) 126, 430, 673, 817
BstMCI CGRYCG 1 cut(s) 141
BstMWI GCNNNNNNNGC 3 cut(s) 82, 309, 603
BstNI CCWGG 1 cut(s) 442
BstPAI GACNNNNGTC 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 440
BstSFI CTRYAG 1 cut(s) 956
BstSLI GKGCMC 1 cut(s) 573
BstUI CGCG 2 cut(s) 34, 478
BstV1I GCAGC 4 cut(s) 177, 460, 779, 942
BstV2I GAAGAC 1 cut(s) 166
BstX2I RGATCY 2 cut(s) 430, 673
BstXI CCANNNNNNTGG 1 cut(s) 441
BstYI RGATCY 2 cut(s) 430, 673
Bsu36I CCTNAGG 1 cut(s) 586
BsuRI GGCC 1 cut(s) 85
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 5 cut(s) 510, 519, 796, 949, 1044
Cac8I GCNNGC 1 cut(s) 513
CaiI CAGNNNCTG 1 cut(s) 272
CfoI GCGC 4 cut(s) 240, 478, 1088, 1129
Cfr13I GGNCC 2 cut(s) 392, 1050
CseI GACGC 2 cut(s) 160, 878
Csp6I GTAC 2 cut(s) 485, 657
CviAII CATG 4 cut(s) 48, 220, 565, 787
CviQI GTAC 2 cut(s) 485, 657
DdeI CTNAG 1 cut(s) 586
DinI GGCGCC 1 cut(s) 1087
DpnI GATC 4 cut(s) 128, 432, 675, 819
DpnII GATC 4 cut(s) 126, 430, 673, 817
EaeI YGGCCR 1 cut(s) 83
Eco130I CCWWGG 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 904
Eco31I GGTCTC 1 cut(s) 522
Eco32I GATATC 2 cut(s) 460, 811
Eco47I GGWCC 2 cut(s) 392, 1050
Eco57I CTGAAG 1 cut(s) 45
Eco81I CCTNAGG 1 cut(s) 586
EcoRII CCWGG 1 cut(s) 440
EcoRV GATATC 2 cut(s) 460, 811
EcoT14I CCWWGG 1 cut(s) 47
EcoT22I ATGCAT 3 cut(s) 107, 788, 949
EcoT38I GRGCYC 1 cut(s) 904
EgeI GGCGCC 1 cut(s) 1087
EheI GGCGCC 1 cut(s) 1087
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 4 cut(s) 51, 223, 568, 790
FalI AAGNNNNNCTT 4 cut(s) 437, 469, 1074, 1106
FaqI GGGAC 3 cut(s) 34, 378, 808
FatI CATG 4 cut(s) 47, 219, 564, 786
FauI CCCGC 1 cut(s) 646
Fnu4HI GCNGC 6 cut(s) 166, 169, 474, 607, 768, 956
FokI GGATG 5 cut(s) 506, 517, 803, 956, 1051
FriOI GRGCYC 1 cut(s) 904
Fsp4HI GCNGC 6 cut(s) 166, 169, 474, 607, 768, 956
FspBI CTAG 2 cut(s) 368, 662
FspI TGCGCA 1 cut(s) 1128
GlaI GCGC 4 cut(s) 239, 477, 1087, 1128
GluI GCNGC 6 cut(s) 166, 169, 474, 607, 768, 956
GsaI CCCAGC 1 cut(s) 596
HaeII RGCGCY 2 cut(s) 241, 1089
HaeIII GGCC 1 cut(s) 85
HapII CCGG 3 cut(s) 426, 677, 845
HgaI GACGC 2 cut(s) 160, 878
HhaI GCGC 4 cut(s) 240, 478, 1088, 1129
Hin1I GRCGYC 2 cut(s) 171, 1086
Hin1II CATG 4 cut(s) 51, 223, 568, 790
Hin6I GCGC 4 cut(s) 238, 476, 1086, 1127
HinP1I GCGC 4 cut(s) 238, 476, 1086, 1127
HindIII AAGCTT 3 cut(s) 538, 575, 636
HinfI GANTC 3 cut(s) 269, 689, 971
HpaII CCGG 3 cut(s) 426, 677, 845
HphI GGTGA 3 cut(s) 82, 932, 1135
Hpy166II GTNNAC 3 cut(s) 187, 485, 659
Hpy188I TCNGA 6 cut(s) 131, 181, 258, 715, 970, 1050
Hpy188III TCNNGA 5 cut(s) 677, 686, 693, 845, 1019
Hpy8I GTNNAC 3 cut(s) 187, 485, 659
Hpy99I CGWCG 5 cut(s) 146, 185, 212, 894, 1037
HpyAV CCTTC 6 cut(s) 89, 344, 643, 823, 1076, 1142
HpyCH4III ACNGT 3 cut(s) 294, 362, 851
HpyCH4IV ACGT 2 cut(s) 183, 699
HpyCH4V TGCA 9 cut(s) 76, 105, 230, 465, 671, 767, 786, 947, 958
HpyF10VI GCNNNNNNNGC 3 cut(s) 82, 309, 603
HpyF3I CTNAG 1 cut(s) 586
HpySE526I ACGT 2 cut(s) 183, 699
Hsp92I GRCGYC 2 cut(s) 171, 1086
Hsp92II CATG 4 cut(s) 51, 223, 568, 790
HspAI GCGC 4 cut(s) 238, 476, 1086, 1127
KasI GGCGCC 1 cut(s) 1085
Kpn2I TCCGGA 2 cut(s) 676, 844
Kzo9I GATC 4 cut(s) 126, 430, 673, 817
LmnI GCTCC 3 cut(s) 847, 899, 952
Lsp1109I GCAGC 4 cut(s) 177, 460, 779, 942
LweI GCATC 1 cut(s) 934
MaeI CTAG 2 cut(s) 368, 662
MaeII ACGT 2 cut(s) 183, 699
MaeIII GTNAC 1 cut(s) 700
MalI GATC 4 cut(s) 128, 432, 675, 819
MboI GATC 4 cut(s) 126, 430, 673, 817
MboII GAAGA 5 cut(s) 31, 64, 166, 359, 457
MflI RGATCY 2 cut(s) 430, 673
MhlI GDGCHC 2 cut(s) 573, 904
MlsI TGGCCA 1 cut(s) 85
MluCI AATT 3 cut(s) 860, 1096, 1111
MluNI TGGCCA 1 cut(s) 85
Mly113I GGCGCC 1 cut(s) 1086
MlyI GAGTC 1 cut(s) 278
MmeI TCCRAC 2 cut(s) 204, 948
MnlI CCTC 5 cut(s) 332, 503, 922, 934, 1072
Mox20I TGGCCA 1 cut(s) 85
Mph1103I ATGCAT 3 cut(s) 107, 788, 949
MroI TCCGGA 2 cut(s) 676, 844
MscI TGGCCA 1 cut(s) 85
MseI TTAA 3 cut(s) 204, 543, 1121
MslI CAYNNNNRTG 2 cut(s) 503, 614
Msp20I TGGCCA 1 cut(s) 85
MspA1I CMGCKG 1 cut(s) 168
MspI CCGG 3 cut(s) 426, 677, 845
MspR9I CCNGG 1 cut(s) 442
Mva1269I GAATGC 1 cut(s) 105
MvaI CCWGG 1 cut(s) 442
MvnI CGCG 2 cut(s) 34, 478
MwoI GCNNNNNNNGC 3 cut(s) 82, 309, 603
NarI GGCGCC 1 cut(s) 1086
NcoI CCATGG 1 cut(s) 47
NdeII GATC 4 cut(s) 126, 430, 673, 817
NlaIII CATG 4 cut(s) 51, 223, 568, 790
NlaIV GGNNCC 5 cut(s) 214, 394, 570, 901, 1087
NmeAIII GCCGAG 2 cut(s) 141, 901
NsbI TGCGCA 1 cut(s) 1128
NsiI ATGCAT 3 cut(s) 107, 788, 949
OliI CACNNNNGTG 1 cut(s) 614
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PctI GAATGC 1 cut(s) 105
PfeI GAWTC 2 cut(s) 689, 971
PfoI TCCNGGA 1 cut(s) 440
PkrI GCNGC 6 cut(s) 167, 170, 475, 608, 769, 957
PleI GAGTC 1 cut(s) 277
PluTI GGCGCC 1 cut(s) 1089
PpsI GAGTC 1 cut(s) 277
PshAI GACNNNNGTC 1 cut(s) 26
PsiI TTATAA 1 cut(s) 245
Psp1406I AACGTT 1 cut(s) 699
Psp6I CCWGG 1 cut(s) 440
PspFI CCCAGC 1 cut(s) 592
PspGI CCWGG 1 cut(s) 440
PspN4I GGNNCC 5 cut(s) 214, 394, 570, 901, 1087
PspPI GGNCC 2 cut(s) 392, 1050
PstI CTGCAG 1 cut(s) 960
PstNI CAGNNNCTG 1 cut(s) 272
PsuI RGATCY 2 cut(s) 430, 673
RsaI GTAC 2 cut(s) 486, 658
RsaNI GTAC 2 cut(s) 485, 657
RseI CAYNNNNRTG 2 cut(s) 503, 614
SaqAI TTAA 3 cut(s) 204, 543, 1121
SatI GCNGC 6 cut(s) 166, 169, 474, 607, 768, 956
Sau3AI GATC 4 cut(s) 126, 430, 673, 817
Sau96I GGNCC 2 cut(s) 392, 1050
SchI GAGTC 1 cut(s) 278
ScrFI CCNGG 1 cut(s) 442
SduI GDGCHC 2 cut(s) 573, 904
SfaNI GCATC 1 cut(s) 934
SfcI CTRYAG 1 cut(s) 956
SfoI GGCGCC 1 cut(s) 1087
SinI GGWCC 2 cut(s) 392, 1050
SmiMI CAYNNNNRTG 2 cut(s) 503, 614
SmlI CTYRAG 1 cut(s) 938
SmoI CTYRAG 1 cut(s) 938
Sse9I AATT 3 cut(s) 860, 1096, 1111
SsiI CCGC 4 cut(s) 168, 423, 606, 653
SspDI GGCGCC 1 cut(s) 1085
SspMI CTAG 2 cut(s) 368, 662
StyD4I CCNGG 1 cut(s) 440
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 3 cut(s) 294, 362, 851
TaiI ACGT 2 cut(s) 186, 702
TaqI TCGA 3 cut(s) 109, 279, 892
TaqII GACCGA 1 cut(s) 155
TasI AATT 3 cut(s) 860, 1096, 1111
TatI WGTACW 1 cut(s) 484
TauI GCSGC 2 cut(s) 171, 609
TfiI GAWTC 2 cut(s) 689, 971
Tru1I TTAA 3 cut(s) 204, 543, 1121
Tru9I TTAA 3 cut(s) 204, 543, 1121
TseI GCWGC 4 cut(s) 165, 473, 767, 955
TspDTI ATGAA 4 cut(s) 318, 322, 521, 630
TspGWI ACGGA 2 cut(s) 225, 299
VpaK11BI GGWCC 2 cut(s) 392, 1050
XapI RAATTY 2 cut(s) 860, 1096
XcmI CCANNNNNNNNNTGG 1 cut(s) 982
XspI CTAG 2 cut(s) 368, 662
Zsp2I ATGCAT 3 cut(s) 107, 788, 949
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.