Rmu_co8298979.1_g000001

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8298979.1
OG0009726
Physical Location & Seq
Forward (+)
22 .. 588
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8298979.1_g000001.1.cds

Sequence Viewer

Length: 567 bp
atggtgcccaagctttctgccttggggctgggcaagttgggcggcactaatgtgaaaaataaactcaacaaagcttcatcaaggaaggcgggtacactaggatatgcagatccggagtatctggaatcgggaaacgttactcataaatctgatgtctttgcttttggagtggtattatttgaagtcttgtgtgttagaagtgtagcagagtttatagaatgcatggatgggcggactttactctttgatatcattgatccatacttgaagggcaaaatagctccggactgtttgagaaaatttgtggatattgccgagagatgtgtgcgtcgaatgggagcccaacgaccaacgataggtgaagtggaggtagaacttgaggatgcattggagctgcaggaaaagtcggattccagcaaaaacttggagacaagcacttctatttctcctgcccatcaggactatacctacgacgggatgacatttcggaccatcaaggatatttttttctggttagagaaaggcgcccttacaaatttaatatctactaattctcacttaatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169
Pfam Domains
Protein Families
Pkinase_Tyr

Protein Analysis

188

Amino Acids

20.86

Weight (kDa)

5.68

Isoelectric Point (pI)

35.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 524
AccIII TCCGGA 2 cut(s) 112, 283
AciI CCGC 3 cut(s) 42, 89, 232
AclI AACGTT 1 cut(s) 135
AclWI GGATC 2 cut(s) 104, 251
AcsI RAATTY 2 cut(s) 299, 535
AcyI GRCGYC 1 cut(s) 525
AfaI GTAC 1 cut(s) 94
AfiI CCNNNNNNNGG 2 cut(s) 356, 474
AgsI TTSAA 2 cut(s) 182, 268
AleI CACNNNNGTG 1 cut(s) 50
AluBI AGCT 4 cut(s) 13, 74, 281, 394
AluI AGCT 4 cut(s) 13, 74, 281, 394
Alw26I GTCTC 1 cut(s) 422
AlwI GGATC 2 cut(s) 104, 251
Aor13HI TCCGGA 2 cut(s) 112, 283
ApeKI GCWGC 1 cut(s) 394
ApoI RAATTY 2 cut(s) 299, 535
AspLEI GCGC 1 cut(s) 527
AspS9I GGNCC 1 cut(s) 489
AsuHPI GGTGA 1 cut(s) 371
AvaII GGWCC 1 cut(s) 489
BaeGI GKGCMC 1 cut(s) 9
BanI GGYRCC 2 cut(s) 4, 524
BanII GRGCYC 1 cut(s) 343
BbvI GCAGC 1 cut(s) 381
BccI CCATC 3 cut(s) 221, 462, 500
BcoDI GTCTC 1 cut(s) 422
BfaI CTAG 1 cut(s) 98
BfmI CTRYAG 1 cut(s) 395
BfoI RGCGCY 1 cut(s) 528
BisI GCNGC 2 cut(s) 43, 395
BlsI GCNGC 2 cut(s) 44, 396
Bme18I GGWCC 1 cut(s) 489
BmgT120I GGNCC 1 cut(s) 489
BmiI GGNNCC 3 cut(s) 6, 340, 526
BmsI GCATC 1 cut(s) 373
BpuEI CTTGAG 1 cut(s) 398
BsaHI GRCGYC 1 cut(s) 525
BsaJI CCNNGG 1 cut(s) 21
BsaWI WCCGGW 2 cut(s) 112, 283
Bsc4I CCNNNNNNNGG 2 cut(s) 356, 474
BseAI TCCGGA 2 cut(s) 112, 283
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 3 cut(s) 232, 388, 483
BseLI CCNNNNNNNGG 2 cut(s) 356, 474
BseSI GKGCMC 1 cut(s) 9
BseXI GCAGC 1 cut(s) 381
BseYI CCCAGC 1 cut(s) 28
BshNI GGYRCC 2 cut(s) 4, 524
BsiSI CCGG 2 cut(s) 113, 284
BslI CCNNNNNNNGG 2 cut(s) 356, 474
BsmAI GTCTC 1 cut(s) 422
BsmI GAATGC 1 cut(s) 224
Bsp1286I GDGCHC 2 cut(s) 9, 343
Bsp13I TCCGGA 2 cut(s) 112, 283
Bsp143I GATC 2 cut(s) 109, 256
BspACI CCGC 3 cut(s) 42, 89, 232
BspEI TCCGGA 2 cut(s) 112, 283
BspLI GGNNCC 3 cut(s) 6, 340, 526
BspMAI CTGCAG 1 cut(s) 399
BspPI GGATC 2 cut(s) 104, 251
BspT107I GGYRCC 2 cut(s) 4, 524
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 2 cut(s) 109, 256
BssNI GRCGYC 1 cut(s) 525
BssT1I CCWWGG 1 cut(s) 21
Bst4CI ACNGT 1 cut(s) 290
BstACI GRCGYC 1 cut(s) 525
BstF5I GGATG 3 cut(s) 232, 388, 483
BstH2I RGCGCY 1 cut(s) 528
BstHHI GCGC 1 cut(s) 527
BstKTI GATC 2 cut(s) 112, 259
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 2 cut(s) 109, 256
BstMWI GCNNNNNNNGC 1 cut(s) 39
BstSFI CTRYAG 1 cut(s) 395
BstSLI GKGCMC 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 381
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
BtsCI GGATG 3 cut(s) 232, 388, 483
CfoI GCGC 1 cut(s) 527
Cfr13I GGNCC 1 cut(s) 489
CseI GACGC 1 cut(s) 317
Csp6I GTAC 1 cut(s) 93
CviAII CATG 1 cut(s) 223
CviJI RGCY 6 cut(s) 13, 28, 74, 281, 341, 394
CviKI_1 RGCY 6 cut(s) 13, 28, 74, 281, 341, 394
CviQI GTAC 1 cut(s) 93
DinI GGCGCC 1 cut(s) 526
DpnI GATC 2 cut(s) 111, 258
DpnII GATC 2 cut(s) 109, 256
EciI GGCGGA 1 cut(s) 247
Eco130I CCWWGG 1 cut(s) 21
Eco24I GRGCYC 1 cut(s) 343
Eco32I GATATC 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 489
EcoRV GATATC 1 cut(s) 250
EcoT14I CCWWGG 1 cut(s) 21
EcoT22I ATGCAT 2 cut(s) 224, 388
EcoT38I GRGCYC 1 cut(s) 343
EgeI GGCGCC 1 cut(s) 526
EheI GGCGCC 1 cut(s) 526
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 1 cut(s) 226
FaiI YATR 6 cut(s) 105, 144, 215, 224, 262, 465
FalI AAGNNNNNCTT 2 cut(s) 513, 545
FatI CATG 1 cut(s) 222
FauI CCCGC 1 cut(s) 82
Fnu4HI GCNGC 2 cut(s) 43, 395
FokI GGATG 3 cut(s) 239, 395, 490
FriOI GRGCYC 1 cut(s) 343
Fsp4HI GCNGC 2 cut(s) 43, 395
FspBI CTAG 1 cut(s) 98
GlaI GCGC 1 cut(s) 526
GluI GCNGC 2 cut(s) 43, 395
GsaI CCCAGC 1 cut(s) 32
HaeII RGCGCY 1 cut(s) 528
HapII CCGG 2 cut(s) 113, 284
HgaI GACGC 1 cut(s) 317
HhaI GCGC 1 cut(s) 527
Hin1I GRCGYC 1 cut(s) 525
Hin1II CATG 1 cut(s) 226
Hin6I GCGC 1 cut(s) 525
HinP1I GCGC 1 cut(s) 525
HindIII AAGCTT 2 cut(s) 11, 72
HinfI GANTC 2 cut(s) 125, 410
HpaII CCGG 2 cut(s) 113, 284
HphI GGTGA 1 cut(s) 371
Hpy166II GTNNAC 1 cut(s) 95
Hpy188I TCNGA 3 cut(s) 151, 409, 489
Hpy188III TCNNGA 5 cut(s) 113, 122, 129, 284, 458
Hpy8I GTNNAC 1 cut(s) 95
Hpy99I CGWCG 2 cut(s) 333, 476
HpyAV CCTTC 2 cut(s) 79, 262
HpyCH4III ACNGT 1 cut(s) 290
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 4 cut(s) 107, 222, 386, 397
HpyF10VI GCNNNNNNNGC 1 cut(s) 39
HpySE526I ACGT 1 cut(s) 135
Hsp92I GRCGYC 1 cut(s) 525
Hsp92II CATG 1 cut(s) 226
HspAI GCGC 1 cut(s) 525
KasI GGCGCC 1 cut(s) 524
Kpn2I TCCGGA 2 cut(s) 112, 283
Kzo9I GATC 2 cut(s) 109, 256
LmnI GCTCC 3 cut(s) 286, 338, 391
LpnPI CCDG 9 cut(s) 14, 107, 126, 297, 383, 427, 443, 462, 496
Lsp1109I GCAGC 1 cut(s) 381
LweI GCATC 1 cut(s) 373
MaeI CTAG 1 cut(s) 98
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 136
MalI GATC 2 cut(s) 111, 258
MboI GATC 2 cut(s) 109, 256
MflI RGATCY 1 cut(s) 109
MhlI GDGCHC 2 cut(s) 9, 343
MluCI AATT 3 cut(s) 299, 535, 550
Mly113I GGCGCC 1 cut(s) 525
MmeI TCCRAC 1 cut(s) 387
MnlI CCTC 2 cut(s) 361, 373
Mph1103I ATGCAT 2 cut(s) 224, 388
MroI TCCGGA 2 cut(s) 112, 283
MseI TTAA 2 cut(s) 539, 560
MslI CAYNNNNRTG 1 cut(s) 50
MspI CCGG 2 cut(s) 113, 284
Mva1269I GAATGC 1 cut(s) 224
MwoI GCNNNNNNNGC 1 cut(s) 39
NarI GGCGCC 1 cut(s) 525
NdeII GATC 2 cut(s) 109, 256
NlaIII CATG 1 cut(s) 226
NlaIV GGNNCC 3 cut(s) 6, 340, 526
NmeAIII GCCGAG 1 cut(s) 340
NsiI ATGCAT 2 cut(s) 224, 388
OliI CACNNNNGTG 1 cut(s) 50
PctI GAATGC 1 cut(s) 224
PfeI GAWTC 2 cut(s) 125, 410
PkrI GCNGC 2 cut(s) 44, 396
PluTI GGCGCC 1 cut(s) 528
Psp1406I AACGTT 1 cut(s) 135
PspFI CCCAGC 1 cut(s) 28
PspN4I GGNNCC 3 cut(s) 6, 340, 526
PspPI GGNCC 1 cut(s) 489
PstI CTGCAG 1 cut(s) 399
PsuI RGATCY 1 cut(s) 109
RsaI GTAC 1 cut(s) 94
RsaNI GTAC 1 cut(s) 93
RseI CAYNNNNRTG 1 cut(s) 50
SaqAI TTAA 2 cut(s) 539, 560
SatI GCNGC 2 cut(s) 43, 395
Sau3AI GATC 2 cut(s) 109, 256
Sau96I GGNCC 1 cut(s) 489
SduI GDGCHC 2 cut(s) 9, 343
SetI ASST 8 cut(s) 15, 76, 138, 283, 361, 372, 396, 470
SfaNI GCATC 1 cut(s) 373
SfcI CTRYAG 1 cut(s) 395
SfoI GGCGCC 1 cut(s) 526
SinI GGWCC 1 cut(s) 489
SmiMI CAYNNNNRTG 1 cut(s) 50
SmlI CTYRAG 1 cut(s) 377
SmoI CTYRAG 1 cut(s) 377
Sse9I AATT 3 cut(s) 299, 535, 550
SsiI CCGC 3 cut(s) 42, 89, 232
SspDI GGCGCC 1 cut(s) 524
SspMI CTAG 1 cut(s) 98
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 1 cut(s) 290
TaiI ACGT 1 cut(s) 138
TaqI TCGA 1 cut(s) 331
TasI AATT 3 cut(s) 299, 535, 550
TauI GCSGC 1 cut(s) 45
TfiI GAWTC 2 cut(s) 125, 410
Tru1I TTAA 2 cut(s) 539, 560
Tru9I TTAA 2 cut(s) 539, 560
TseI GCWGC 1 cut(s) 394
TspDTI ATGAA 1 cut(s) 66
VpaK11BI GGWCC 1 cut(s) 489
XapI RAATTY 2 cut(s) 299, 535
XcmI CCANNNNNNNNNTGG 1 cut(s) 421
XspI CTAG 1 cut(s) 98
Zsp2I ATGCAT 2 cut(s) 224, 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.