Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0009726

Physical Location & Seq

Genomic Coordinates Forward (+)

2484284 .. 2486874

Gene Structure 2591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g03710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTGCTTTTGCTCTTGGCAAGTTGCAGGAAGCTTCACATTAAATGTCTCACTTGAACAAAAACACAATTATGTGACGGAGTTTGAAAAACCGAGGCATTCTGCAGATGGTTTTTCGAGGAGTGGAAATGGAGAGCTTAAGAAGGTGATCAGAGACAGCCTTGTGACTCAGAAACTGGTGGAAAATACAGAATCTGTCGAACAGGGTTTTACTTTTGCTCACGAAGATAATGGATTCGTGCTTGGATACTCCCTCCACCAGCTCAAGCCAGAGTTATATACCAAAAATGTTGCGAGTGAAGAAAGTGAGAAGAGAATTATTATGGACGATAAAAGTGGCCGCTTCCCCATTCAAATCAATCTTCTGCTACTAGCATGTCAAGGCAAGTCAAGAATATGCATAACTCTAGACAAGTTGGTGGAGGAAGTTTGTAGCAGAATCGAGAATCTGAGAAATTCAAGTAAACTTGCCGGTGAGAGGCTTCTTGCGGACAGTCTGTATTTGATGTTTGAGAGGGACATAATGTTGAATAAGAAGAGTATCCAAGATAACTCTAATGATCCCAAGAAGAAGAAAATAGACTCTAGGCTTTGTTTTTCCTTGGATGATATACAATGCTTGGGGACTTGGGTATTTATAGCAAACCAAATGAAAGCTACACCACACACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4378 VARLMGL

Protein Analysis

224

Amino Acids

25.42

Weight (kDa)

6.95

Isoelectric Point (pI)

29.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009726)

Species	Orthologous Gene IDs
malus_domestica	MD04G1237900.v1.1 MD04G1238200.v1.1 MD04G1238300.v1.1 MD04G1238400.v1.1 MD12G1256100.v1.1 MD12G1256200.v1.1 MD12G1256400.v1.1 MD12G1256500.v1.1
pyrus_communis	pycom02g03710 pycom04g21120 pycom04g21130 pycom12g23490 pycom12g23510 pycom17g22130
rosa_chinensis	RchiOBHm_Chr0c37g0502971 RchiOBHm_Chr6g0265111 RchiOBHm_Chr6g0265191
rosa_multiflora	Rmu_co8298979.1_g000001 Rmu_ssc0000359.1_g000070
rosa_samantha	Rh6AG136900 Rh6BG133800
rosa_wichuraiana	Rw6G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	340, 488
AclWI	GGATC	1 cut(s)	554
AcoI	YGGCCR	1 cut(s)	337
AcsI	RAATTY	1 cut(s)	454
AfiI	CCNNNNNNNGG	1 cut(s)	477
AflII	CTTAAG	1 cut(s)	137
AgsI	TTSAA	5 cut(s)	56, 86, 353, 459, 529
AluBI	AGCT	4 cut(s)	33, 136, 262, 656
AluI	AGCT	4 cut(s)	33, 136, 262, 656
Alw26I	GTCTC	2 cut(s)	52, 147
AlwI	GGATC	1 cut(s)	554
AlwNI	CAGNNNCTG	2 cut(s)	175, 194
AoxI	GGCC	1 cut(s)	337
ApoI	RAATTY	1 cut(s)	454
AsuHPI	GGTGA	2 cut(s)	157, 485
BccI	CCATC	1 cut(s)	101
BciVI	GTATCC	2 cut(s)	239, 551
BclI	TGATCA	1 cut(s)	147
BcoDI	GTCTC	2 cut(s)	52, 147
BfaI	CTAG	3 cut(s)	371, 407, 585
BfmI	CTRYAG	1 cut(s)	102
BfrI	CTTAAG	1 cut(s)	137
BfuI	GTATCC	2 cut(s)	239, 551
BisI	GCNGC	1 cut(s)	340
BlsI	GCNGC	1 cut(s)	341
BpuEI	CTTGAG	1 cut(s)	248
BsaJI	CCNNGG	2 cut(s)	92, 600
Bsc4I	CCNNNNNNNGG	1 cut(s)	477
Bse118I	RCCGGY	1 cut(s)	470
Bse1I	ACTGG	1 cut(s)	180
BseDI	CCNNGG	2 cut(s)	92, 600
BseGI	GGATG	1 cut(s)	610
BseLI	CCNNNNNNNGG	1 cut(s)	477
BseMII	CTCAG	2 cut(s)	182, 440
BseNI	ACTGG	1 cut(s)	180
BseRI	GAGGAG	1 cut(s)	133
BshFI	GGCC	1 cut(s)	339
BsiSI	CCGG	1 cut(s)	471
BslFI	GGGAC	2 cut(s)	530, 637
BslI	CCNNNNNNNGG	1 cut(s)	477
BsmAI	GTCTC	2 cut(s)	52, 147
BsmFI	GGGAC	2 cut(s)	530, 637
BsmI	GAATGC	1 cut(s)	97
BsnI	GGCC	1 cut(s)	339
Bsp143I	GATC	2 cut(s)	147, 559
BspACI	CCGC	2 cut(s)	340, 488
BspANI	GGCC	1 cut(s)	339
BspCNI	CTCAG	2 cut(s)	181, 441
BspMAI	CTGCAG	1 cut(s)	106
BspPI	GGATC	1 cut(s)	554
BspTI	CTTAAG	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	470
BsrI	ACTGG	1 cut(s)	180
BssAI	RCCGGY	1 cut(s)	470
BssECI	CCNNGG	2 cut(s)	92, 600
BssMI	GATC	2 cut(s)	147, 559
BssT1I	CCWWGG	1 cut(s)	600
Bst4CI	ACNGT	1 cut(s)	494
Bst6I	CTCTTC	2 cut(s)	305, 530
BstAFI	CTTAAG	1 cut(s)	137
BstDEI	CTNAG	2 cut(s)	168, 449
BstF5I	GGATG	1 cut(s)	610
BstKTI	GATC	2 cut(s)	150, 562
BstMAI	GTCTC	2 cut(s)	52, 147
BstMBI	GATC	2 cut(s)	147, 559
BstNSI	RCATGY	1 cut(s)	378
BstSFI	CTRYAG	1 cut(s)	102
BsuI	GTATCC	2 cut(s)	239, 551
BsuRI	GGCC	1 cut(s)	339
BtsCI	GGATG	1 cut(s)	610
CaiI	CAGNNNCTG	2 cut(s)	175, 194
Cfr10I	RCCGGY	1 cut(s)	470
CviAII	CATG	1 cut(s)	375
CviJI	RGCY	9 cut(s)	33, 136, 159, 262, 268, 339, 481, 589, 656
CviKI_1	RGCY	9 cut(s)	33, 136, 159, 262, 268, 339, 481, 589, 656
DdeI	CTNAG	2 cut(s)	168, 449
DpnI	GATC	2 cut(s)	149, 561
DpnII	GATC	2 cut(s)	147, 559
EaeI	YGGCCR	1 cut(s)	337
Eam1104I	CTCTTC	2 cut(s)	305, 530
EarI	CTCTTC	2 cut(s)	305, 530
Eco130I	CCWWGG	1 cut(s)	600
EcoT14I	CCWWGG	1 cut(s)	600
EcoT22I	ATGCAT	1 cut(s)	401
ErhI	CCWWGG	1 cut(s)	600
FaeI	CATG	1 cut(s)	378
FaqI	GGGAC	2 cut(s)	530, 637
FatI	CATG	1 cut(s)	374
FbaI	TGATCA	1 cut(s)	147
Fnu4HI	GCNGC	1 cut(s)	340
FokI	GGATG	1 cut(s)	617
Fsp4HI	GCNGC	1 cut(s)	340
FspBI	CTAG	3 cut(s)	371, 407, 585
GluI	GCNGC	1 cut(s)	340
HaeIII	GGCC	1 cut(s)	339
HapII	CCGG	1 cut(s)	471
Hin1II	CATG	1 cut(s)	378
HindIII	AAGCTT	1 cut(s)	31
HinfI	GANTC	6 cut(s)	166, 191, 234, 438, 445, 581
HpaII	CCGG	1 cut(s)	471
HphI	GGTGA	2 cut(s)	157, 485
Hpy166II	GTNNAC	1 cut(s)	464
Hpy188I	TCNGA	3 cut(s)	152, 171, 450
Hpy188III	TCNNGA	4 cut(s)	221, 390, 407, 442
Hpy8I	GTNNAC	1 cut(s)	464
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	1 cut(s)	494
HpyCH4V	TGCA	3 cut(s)	26, 104, 399
HpyF3I	CTNAG	2 cut(s)	168, 449
Hsp92II	CATG	1 cut(s)	378
Ksp22I	TGATCA	1 cut(s)	147
Kzo9I	GATC	2 cut(s)	147, 559
LpnPI	CCDG	6 cut(s)	12, 161, 188, 272, 282, 484
MaeI	CTAG	3 cut(s)	371, 407, 585
MaeIII	GTNAC	2 cut(s)	73, 163
MalI	GATC	2 cut(s)	149, 561
MboI	GATC	2 cut(s)	147, 559
MboII	GAAGA	7 cut(s)	236, 311, 322, 353, 547, 580, 583
MluCI	AATT	3 cut(s)	67, 315, 454
MlyI	GAGTC	2 cut(s)	160, 575
MnlI	CCTC	6 cut(s)	87, 111, 263, 415, 471, 507
Mph1103I	ATGCAT	1 cut(s)	401
MseI	TTAA	3 cut(s)	41, 138, 670
MslI	CAYNNNNRTG	1 cut(s)	69
MspCI	CTTAAG	1 cut(s)	137
MspI	CCGG	1 cut(s)	471
Mva1269I	GAATGC	1 cut(s)	97
NdeII	GATC	2 cut(s)	147, 559
NlaIII	CATG	1 cut(s)	378
NmuCI	GTSAC	2 cut(s)	73, 163
NsiI	ATGCAT	1 cut(s)	401
NspI	RCATGY	1 cut(s)	378
PctI	GAATGC	1 cut(s)	97
PfeI	GAWTC	4 cut(s)	191, 234, 438, 445
PkrI	GCNGC	1 cut(s)	341
PleI	GAGTC	2 cut(s)	160, 575
PpsI	GAGTC	2 cut(s)	160, 575
PstI	CTGCAG	1 cut(s)	106
PstNI	CAGNNNCTG	2 cut(s)	175, 194
RseI	CAYNNNNRTG	1 cut(s)	69
SaqAI	TTAA	3 cut(s)	41, 138, 670
SatI	GCNGC	1 cut(s)	340
Sau3AI	GATC	2 cut(s)	147, 559
SchI	GAGTC	2 cut(s)	160, 575
SetI	ASST	5 cut(s)	35, 138, 147, 264, 658
SfcI	CTRYAG	1 cut(s)	102
SmiMI	CAYNNNNRTG	1 cut(s)	69
SmlI	CTYRAG	2 cut(s)	137, 263
SmoI	CTYRAG	2 cut(s)	137, 263
Sse9I	AATT	3 cut(s)	67, 315, 454
SsiI	CCGC	2 cut(s)	340, 488
SspMI	CTAG	3 cut(s)	371, 407, 585
StyI	CCWWGG	1 cut(s)	600
TaaI	ACNGT	1 cut(s)	494
TaqI	TCGA	3 cut(s)	116, 198, 441
TasI	AATT	3 cut(s)	67, 315, 454
TauI	GCSGC	1 cut(s)	342
TfiI	GAWTC	4 cut(s)	191, 234, 438, 445
Tru1I	TTAA	3 cut(s)	41, 138, 670
Tru9I	TTAA	3 cut(s)	41, 138, 670
TseFI	GTSAC	2 cut(s)	73, 163
Tsp45I	GTSAC	2 cut(s)	73, 163
TspDTI	ATGAA	1 cut(s)	665
TspGWI	ACGGA	1 cut(s)	92
Vha464I	CTTAAG	1 cut(s)	137
XapI	RAATTY	1 cut(s)	454
XbaI	TCTAGA	1 cut(s)	406
XceI	RCATGY	1 cut(s)	378
XspI	CTAG	3 cut(s)	371, 407, 585
Zsp2I	ATGCAT	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.