MD05G1037900.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0004806
Physical Location & Seq
Reverse (-)
6020069 .. 6023848
3780 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1037900.v1.1.491

Sequence Viewer

Length: 1947 bp
ATGTGCAGGCTTGTTTTCAGATCCTTACCATGTAAGTCTCTCTCCCAGTATAGAGGTGAATTGGCCATTCTAATCTTCAATCCTTCACAGCTTCCAGATGTGGATCATAGCCATTTTATTAGAGCCATGTCATCGTTGTCTCCGACATCGTCATCAGTTGCAACTCCATCCCATAAGCACATTGCCCAGCTTTTATTAGAGCAAAAATCAGCAGCCCAAGCCCTCGAAACCTTCAAATGGGCCTCCAAACTCCCCAAGTTCACACACTCTCCCTCCACTTACCGAGCTCTCATCCACAAGCTGTGCACCTTCCACCGCTTTGACACCGTTCACCAACTGCTTGATCAAATGCCCACATCAATTGGACAGCCCCCGGATGAAGACATTTTTGTCACCATCATTCGAGGTCTTGGCCGTGCCCACATGGTAAAACAAGTGATCAAAGTGCTTGACTTGGTTTACAAGTATGACCAGAAACCTTCTTTGAAAGTATTCAATACAATACTTGATGTTCTTGTGAAGGAAGATATAGATATAGCCAGGGAGTTTTACAGGAAGAAGATGATGGAAAGTGGCATTGATGGCGATGGTTATACTTTTGGTATCTTGATGAAAGGACTTTGCCTGACGAACCGAATTGGTGATGGTTTTAAGCTTTTGCAAGCAATGAAGACTCGGGGAATCACCCCAAATACTGTGGTATATAACACGTTGCTTCATGCGCTTGGCAAGAACAAGAAAGTTGGTAGAGCGAGAAGCTTGATGAATGAGATGGAAGCACCGAATGACGTGACTTTTAATATTTTGATATCTGGGTATTGTGGAGAAGAGAATTTAGTGCAAGCTCTTGTTCTGCTAGAGAAGTGCTTTGGTTTGGGGTTTGTGCCTGATGTTGTCACTGTAACTAAGGTGTTGGAAATTCTTTGCAACAATGGCCGTGTAATGGAGGCTCTCAAGCTTATAGAGAGAGTGGAGAGCAAGGGAGGACTGGTGGATGTGGTAGCTTATAACACCTTGGTCAAGGGTTTTTGTAGATTAGGGAAAGCGAAACTCAGTCTTCGCATTGTGGAGGAAATGGAGAAAAAGGGATGCCTTCCAAATGTTGATACTTACAATGTCTTGATCTCTTGTTTTTGCGAATCTGGGATGTTGGATATGGCTCTAGATCTGTTTAAGGATATGGAAACAGATGGTATCTACTGGAATTTTGTTACGTACGATACATTAATTAGAGGTTTGTGTTCAGCAGGAAGGACGGAAAAAGGGTTTGAAATTTTGGAACTAATGAATGAGAGAAAACACGGTTCTGGGGGCCAAATCTCTCCTTATAATAGTGTATTATACGGGTTGTATAAGGAAAATCGTTTAGGCGAAGCACTTGAGTTTTTAACCAGTTTGGGGAAATTATTTCCCAGAGCTGTTGATAGAAGCTTGAAAATATTAGGTTTCTGTGAAGAGGGCGCCACATTGAATGCAAAGAAGGTTTATGATCAGATGATTACAGAAAATGGAGTTCCAAGTGCTATAATCTTCGACTGTCTAATCAATAGATTTTGCCAAGAAGGCTCTGTTCGCGAAGCGTTTGACCTAATGAACGAGATGATTGGTCATGGTTACATTCCTCTTGCATCGACATTTAATCCTCTGATCAATGCGTTTTGTGACAAAGGGAAAGTTGGTAGTGCACTGAAACTTGTGGAGGACATGGTTGAGAGAGGTTGCTCACCAGATGGTGGAAGTTATGGTCCGTTGGTAGCTGTTCTTTGCCGGATGGGGGATTTTCAGAAAGCTTTGAGATTGGTTTTGCAGATGGTACAAAGGGGCATCGTTCCAGATTACTTTACATGGAATTCATTGCTTCTTTGTTTAAGTGAAGAGACTGTATGGTTGAAAGGAAGAAGTGTAATCGATGTAAATAGCTTGTTACACCATATTATTGACAATTAA

Protein Analysis

649

Amino Acids

72.45

Weight (kDa)

7.76

Isoelectric Point (pI)

28.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 218 - 274 2e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 226 - 259 2.9e-07 PPR repeat
PPR_2 PF13041 230 - 274 1.2e-12 PPR repeat family
PPR_2 PF13041 261 - 302 7.9e-06 PPR repeat family
PPR_1 PF12854 261 - 288 3e-06 PPR repeat
PPR_long PF17177 318 - 429 2.3e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 322 - 378 9.1e-14 Pentatricopeptide repeat domain
PPR_1 PF12854 328 - 360 6.7e-07 PPR repeat
PPR_2 PF13041 332 - 379 3.8e-16 PPR repeat family
PPR PF01535 334 - 364 3.4e-06 PPR repeat
PPR_1 PF12854 362 - 395 4.3e-11 PPR repeat
PPR_2 PF13041 366 - 414 2.2e-15 PPR repeat family
PPR PF01535 370 - 399 4.2e-09 PPR repeat
PPR_1 PF12854 398 - 429 2.1e-07 PPR repeat
PPR_1 PF12854 505 - 534 1.7e-07 PPR repeat
PPR_1 PF12854 543 - 570 5.5e-07 PPR repeat
PPR_2 PF13041 544 - 590 1.6e-10 PPR repeat family
PPR PF01535 544 - 574 6.6e-06 PPR repeat
PPR_2 PF13041 581 - 623 8.7e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1008, 1329
AasI GACNNNNNNGTC 1 cut(s) 389
AccB1I GGYRCC 1 cut(s) 1460
AccB7I CCANNNNNTGG 1 cut(s) 1733
AccII CGCG 1 cut(s) 1575
AciI CCGC 1 cut(s) 316
AclWI GGATC 2 cut(s) 15, 111
AcoI YGGCCR 3 cut(s) 63, 412, 934
AcsI RAATTY 5 cut(s) 832, 918, 1204, 1272, 1849
AcyI GRCGYC 1 cut(s) 1461
AfaI GTAC 2 cut(s) 1217, 1815
AfiI CCNNNNNNNGG 5 cut(s) 237, 943, 1398, 1733, 1774
AflIII ACRYGT 1 cut(s) 708
AgsI TTSAA 8 cut(s) 79, 235, 487, 496, 1271, 1435, 1471, 1891
AjiI CACGTC 1 cut(s) 790
AjnI CCWGG 1 cut(s) 539
Alw21I GWGCWC 3 cut(s) 289, 308, 1687
Alw26I GTCTC 3 cut(s) 42, 144, 1871
Alw44I GTGCAC 2 cut(s) 304, 1683
AlwI GGATC 2 cut(s) 15, 111
Ama87I CYCGRG 1 cut(s) 675
AoxI GGCC 5 cut(s) 63, 240, 412, 934, 1312
ApaLI GTGCAC 2 cut(s) 304, 1683
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 5 cut(s) 832, 918, 1204, 1272, 1849
AseI ATTAAT 1 cut(s) 1226
Asp700I GAANNNNTTC 1 cut(s) 491
AspLEI GCGC 2 cut(s) 724, 1463
AspS9I GGNCC 3 cut(s) 240, 1312, 1745
AsuC2I CCSGG 1 cut(s) 374
AsuHPI GGTGA 6 cut(s) 68, 323, 385, 653, 676, 1716
AvaI CYCGRG 1 cut(s) 675
AvaII GGWCC 1 cut(s) 1745
BaeGI GKGCMC 3 cut(s) 308, 421, 1687
BalI TGGCCA 1 cut(s) 65
BanI GGYRCC 1 cut(s) 1460
BanII GRGCYC 1 cut(s) 289
BbsI GAAGAC 3 cut(s) 387, 677, 1049
Bbv12I GWGCWC 3 cut(s) 289, 308, 1687
BbvI GCAGC 1 cut(s) 224
BceAI ACGGC 2 cut(s) 399, 921
BciT130I CCWGG 1 cut(s) 541
BclI TGATCA 4 cut(s) 343, 438, 1489, 1647
BcnI CCSGG 1 cut(s) 374
BcoDI GTCTC 3 cut(s) 42, 144, 1871
BfaI CTAG 2 cut(s) 857, 1163
BfoI RGCGCY 1 cut(s) 1464
BglI GCCNNNNNGGC 1 cut(s) 1563
BglII AGATCT 1 cut(s) 1165
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
Bme1390I CCNGG 2 cut(s) 374, 541
Bme18I GGWCC 1 cut(s) 1745
BmeT110I CYCGRG 1 cut(s) 675
BmgBI CACGTC 1 cut(s) 790
BmgT120I GGNCC 3 cut(s) 240, 1312, 1745
BmiI GGNNCC 2 cut(s) 1313, 1462
BmrFI CCNGG 2 cut(s) 374, 541
BmrI ACTGGG 1 cut(s) 40
BmsI GCATC 3 cut(s) 1079, 1637, 1833
BmuI ACTGGG 1 cut(s) 40
BpiI GAAGAC 3 cut(s) 387, 677, 1049
BpuEI CTTGAG 2 cut(s) 938, 1400
BpuMI CCSGG 1 cut(s) 374
Bsa29I ATCGAT 1 cut(s) 1908
BsaAI YACGTR 1 cut(s) 1215
BsaBI GATNNNNATC 1 cut(s) 102
BsaHI GRCGYC 1 cut(s) 1461
BsaJI CCNNGG 3 cut(s) 372, 540, 1014
BsaXI ACNNNNNCTCC 6 cut(s) 253, 257, 283, 287, 975, 1005
Bsc4I CCNNNNNNNGG 5 cut(s) 237, 943, 1398, 1733, 1774
Bse1I ACTGG 4 cut(s) 46, 993, 1205, 1392
Bse3DI GCAATG 3 cut(s) 180, 672, 1853
Bse8I GATNNNNATC 1 cut(s) 102
BseBI CCWGG 1 cut(s) 541
BseCI ATCGAT 1 cut(s) 1908
BseDI CCNNGG 3 cut(s) 372, 540, 1014
BseGI GGATG 7 cut(s) 167, 291, 382, 1000, 1094, 1152, 1776
BseJI GATNNNNATC 1 cut(s) 102
BseLI CCNNNNNNNGG 5 cut(s) 237, 943, 1398, 1733, 1774
BseMI GCAATG 3 cut(s) 180, 672, 1853
BseMII CTCAG 1 cut(s) 1066
BseNI ACTGG 4 cut(s) 46, 993, 1205, 1392
BseSI GKGCMC 3 cut(s) 308, 421, 1687
BseXI GCAGC 1 cut(s) 224
BseYI CCCAGC 1 cut(s) 186
BsgI GTGCAG 1 cut(s) 25
Bsh1236I CGCG 1 cut(s) 1575
BshFI GGCC 5 cut(s) 65, 242, 414, 936, 1314
BshNI GGYRCC 1 cut(s) 1460
BshVI ATCGAT 1 cut(s) 1908
BsiHKAI GWGCWC 3 cut(s) 289, 308, 1687
BsiHKCI CYCGRG 1 cut(s) 675
BsiSI CCGG 2 cut(s) 374, 1768
BsiWI CGTACG 1 cut(s) 1215
BslI CCNNNNNNNGG 5 cut(s) 237, 943, 1398, 1733, 1774
BsmAI GTCTC 3 cut(s) 42, 144, 1871
BsmI GAATGC 1 cut(s) 1477
BsnI GGCC 5 cut(s) 65, 242, 414, 936, 1314
BsoBI CYCGRG 1 cut(s) 675
Bsp1286I GDGCHC 4 cut(s) 289, 308, 421, 1687
Bsp143I GATC 8 cut(s) 20, 103, 343, 438, 1122, 1165, 1489, 1647
Bsp68I TCGCGA 1 cut(s) 1575
BspACI CCGC 1 cut(s) 316
BspANI GGCC 5 cut(s) 65, 242, 414, 936, 1314
BspCNI CTCAG 1 cut(s) 1065
BspDI ATCGAT 1 cut(s) 1908
BspFNI CGCG 1 cut(s) 1575
BspLI GGNNCC 2 cut(s) 1313, 1462
BspPI GGATC 2 cut(s) 15, 111
BspT107I GGYRCC 1 cut(s) 1460
BsrDI GCAATG 3 cut(s) 180, 672, 1853
BsrI ACTGG 4 cut(s) 46, 993, 1205, 1392
BssECI CCNNGG 3 cut(s) 372, 540, 1014
BssMI GATC 8 cut(s) 20, 103, 343, 438, 1122, 1165, 1489, 1647
BssNI GRCGYC 1 cut(s) 1461
BssT1I CCWWGG 1 cut(s) 1014
Bst2UI CCWGG 1 cut(s) 541
Bst4CI ACNGT 6 cut(s) 328, 697, 901, 1304, 1538, 1882
Bst6I CTCTTC 3 cut(s) 822, 1449, 1869
BstACI GRCGYC 1 cut(s) 1461
BstBAI YACGTR 1 cut(s) 1215
BstC8I GCNNGC 3 cut(s) 8, 663, 843
BstDEI CTNAG 2 cut(s) 906, 1052
BstF5I GGATG 7 cut(s) 167, 291, 382, 1000, 1094, 1152, 1776
BstFNI CGCG 1 cut(s) 1575
BstH2I RGCGCY 1 cut(s) 1464
BstHHI GCGC 2 cut(s) 724, 1463
BstKTI GATC 8 cut(s) 23, 106, 346, 441, 1125, 1168, 1492, 1650
BstMAI GTCTC 3 cut(s) 42, 144, 1871
BstMBI GATC 8 cut(s) 20, 103, 343, 438, 1122, 1165, 1489, 1647
BstMWI GCNNNNNNNGC 6 cut(s) 218, 582, 721, 933, 1563, 1572
BstNI CCWGG 1 cut(s) 541
BstSCI CCNGG 2 cut(s) 372, 539
BstSLI GKGCMC 3 cut(s) 308, 421, 1687
BstSNI TACGTA 1 cut(s) 1215
BstUI CGCG 1 cut(s) 1575
BstV1I GCAGC 1 cut(s) 224
BstV2I GAAGAC 3 cut(s) 387, 677, 1049
BstX2I RGATCY 2 cut(s) 20, 1165
BstYI RGATCY 2 cut(s) 20, 1165
Bsu15I ATCGAT 1 cut(s) 1908
BsuRI GGCC 5 cut(s) 65, 242, 414, 936, 1314
BsuTUI ATCGAT 1 cut(s) 1908
BtgZI GCGATG 1 cut(s) 600
BtrI CACGTC 1 cut(s) 790
BtsCI GGATG 7 cut(s) 167, 291, 382, 1000, 1094, 1152, 1776
BtsIMutI CAGTG 2 cut(s) 897, 1685
BtuMI TCGCGA 1 cut(s) 1575
Cac8I GCNNGC 3 cut(s) 8, 663, 843
CfoI GCGC 2 cut(s) 724, 1463
Cfr13I GGNCC 3 cut(s) 240, 1312, 1745
ClaI ATCGAT 1 cut(s) 1908
Csp6I GTAC 2 cut(s) 1216, 1814
CspCI CAANNNNNGTGG 4 cut(s) 343, 378, 678, 713
CviAII CATG 7 cut(s) 30, 127, 424, 719, 1610, 1705, 1845
CviQI GTAC 2 cut(s) 1216, 1814
DdeI CTNAG 2 cut(s) 906, 1052
DinI GGCGCC 1 cut(s) 1462
DpnI GATC 8 cut(s) 22, 105, 345, 440, 1124, 1167, 1491, 1649
DpnII GATC 8 cut(s) 20, 103, 343, 438, 1122, 1165, 1489, 1647
DrdI GACNNNNNNGTC 1 cut(s) 389
DseDI GACNNNNNNGTC 1 cut(s) 389
EaeI YGGCCR 3 cut(s) 63, 412, 934
Eam1104I CTCTTC 3 cut(s) 822, 1449, 1869
EarI CTCTTC 3 cut(s) 822, 1449, 1869
Ecl136II GAGCTC 1 cut(s) 287
Eco105I TACGTA 1 cut(s) 1215
Eco130I CCWWGG 1 cut(s) 1014
Eco24I GRGCYC 1 cut(s) 289
Eco32I GATATC 1 cut(s) 810
Eco47I GGWCC 1 cut(s) 1745
Eco53kI GAGCTC 1 cut(s) 287
Eco88I CYCGRG 1 cut(s) 675
EcoICRI GAGCTC 1 cut(s) 287
EcoRI GAATTC 1 cut(s) 1849
EcoRII CCWGG 1 cut(s) 539
EcoRV GATATC 1 cut(s) 810
EcoT14I CCWWGG 1 cut(s) 1014
EcoT38I GRGCYC 1 cut(s) 289
EgeI GGCGCC 1 cut(s) 1462
EheI GGCGCC 1 cut(s) 1462
ErhI CCWWGG 1 cut(s) 1014
FaeI CATG 7 cut(s) 33, 130, 427, 722, 1613, 1708, 1848
FatI CATG 7 cut(s) 29, 126, 423, 718, 1609, 1704, 1844
FbaI TGATCA 4 cut(s) 343, 438, 1489, 1647
Fnu4HI GCNGC 1 cut(s) 213
FokI GGATG 7 cut(s) 154, 278, 389, 1007, 1101, 1159, 1783
FriOI GRGCYC 1 cut(s) 289
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 2 cut(s) 857, 1163
GlaI GCGC 2 cut(s) 723, 1462
GluI GCNGC 1 cut(s) 213
GsaI CCCAGC 1 cut(s) 190
HaeII RGCGCY 1 cut(s) 1464
HaeIII GGCC 5 cut(s) 65, 242, 414, 936, 1314
HapII CCGG 2 cut(s) 374, 1768
HhaI GCGC 2 cut(s) 724, 1463
Hin1I GRCGYC 1 cut(s) 1461
Hin1II CATG 7 cut(s) 33, 130, 427, 722, 1613, 1708, 1848
Hin6I GCGC 2 cut(s) 722, 1461
HinP1I GCGC 2 cut(s) 722, 1461
HindIII AAGCTT 5 cut(s) 653, 757, 956, 1429, 1788
HinfI GANTC 3 cut(s) 673, 681, 1139
HpaII CCGG 2 cut(s) 374, 1768
HphI GGTGA 6 cut(s) 68, 323, 385, 653, 676, 1716
Hpy166II GTNNAC 5 cut(s) 261, 306, 331, 460, 1685
Hpy188I TCNGA 5 cut(s) 20, 144, 1494, 1647, 1785
Hpy188III TCNNGA 6 cut(s) 95, 607, 1120, 1163, 1574, 1832
Hpy8I GTNNAC 5 cut(s) 261, 306, 331, 460, 1685
HpyAV CCTTC 9 cut(s) 93, 241, 319, 489, 514, 1103, 1245, 1474, 1556
HpyCH4III ACNGT 6 cut(s) 328, 697, 901, 1304, 1538, 1882
HpyCH4IV ACGT 3 cut(s) 710, 789, 1214
HpyF10VI GCNNNNNNNGC 6 cut(s) 218, 582, 721, 933, 1563, 1572
HpyF3I CTNAG 2 cut(s) 906, 1052
HpySE526I ACGT 3 cut(s) 710, 789, 1214
Hsp92I GRCGYC 1 cut(s) 1461
Hsp92II CATG 7 cut(s) 33, 130, 427, 722, 1613, 1708, 1848
HspAI GCGC 2 cut(s) 722, 1461
KasI GGCGCC 1 cut(s) 1460
Ksp22I TGATCA 4 cut(s) 343, 438, 1489, 1647
Kzo9I GATC 8 cut(s) 20, 103, 343, 438, 1122, 1165, 1489, 1647
Lsp1109I GCAGC 1 cut(s) 224
LweI GCATC 3 cut(s) 1079, 1637, 1833
MaeI CTAG 2 cut(s) 857, 1163
MaeII ACGT 3 cut(s) 710, 789, 1214
MaeIII GTNAC 8 cut(s) 391, 790, 895, 901, 1210, 1613, 1661, 1923
MalI GATC 8 cut(s) 22, 105, 345, 440, 1124, 1167, 1491, 1649
MboI GATC 8 cut(s) 20, 103, 343, 438, 1122, 1165, 1489, 1647
MfeI CAATTG 1 cut(s) 360
MflI RGATCY 2 cut(s) 20, 1165
MhlI GDGCHC 4 cut(s) 289, 308, 421, 1687
MlsI TGGCCA 1 cut(s) 65
MluNI TGGCCA 1 cut(s) 65
Mly113I GGCGCC 1 cut(s) 1461
MlyI GAGTC 1 cut(s) 667
MmeI TCCRAC 3 cut(s) 167, 894, 1131
Mox20I TGGCCA 1 cut(s) 65
MroXI GAANNNNTTC 1 cut(s) 491
MscI TGGCCA 1 cut(s) 65
MseI TTAA 8 cut(s) 651, 798, 1173, 1226, 1388, 1638, 1868, 1945
Msp20I TGGCCA 1 cut(s) 65
MspI CCGG 2 cut(s) 374, 1768
MspR9I CCNGG 2 cut(s) 374, 541
MunI CAATTG 1 cut(s) 360
Mva1269I GAATGC 1 cut(s) 1477
MvaI CCWGG 1 cut(s) 541
MvnI CGCG 1 cut(s) 1575
MwoI GCNNNNNNNGC 6 cut(s) 218, 582, 721, 933, 1563, 1572
NarI GGCGCC 1 cut(s) 1461
NciI CCSGG 1 cut(s) 374
NdeII GATC 8 cut(s) 20, 103, 343, 438, 1122, 1165, 1489, 1647
NlaIII CATG 7 cut(s) 33, 130, 427, 722, 1613, 1708, 1848
NlaIV GGNNCC 2 cut(s) 1313, 1462
NmuCI GTSAC 4 cut(s) 391, 790, 895, 1661
NruI TCGCGA 1 cut(s) 1575
PcsI WCGNNNNNNNCGW 1 cut(s) 140
PctI GAATGC 1 cut(s) 1477
PdmI GAANNNNTTC 1 cut(s) 491
PfeI GAWTC 2 cut(s) 681, 1139
Pfl23II CGTACG 1 cut(s) 1215
PflFI GACNNNGTC 1 cut(s) 148
PflMI CCANNNNNTGG 1 cut(s) 1733
PkrI GCNGC 1 cut(s) 214
PleI GAGTC 1 cut(s) 667
PluTI GGCGCC 1 cut(s) 1464
PpsI GAGTC 1 cut(s) 667
Ppu21I YACGTR 1 cut(s) 1215
PshBI ATTAAT 1 cut(s) 1226
PsiI TTATAA 2 cut(s) 1008, 1329
Psp124BI GAGCTC 1 cut(s) 289
Psp6I CCWGG 1 cut(s) 539
PspFI CCCAGC 1 cut(s) 186
PspGI CCWGG 1 cut(s) 539
PspLI CGTACG 1 cut(s) 1215
PspN4I GGNNCC 2 cut(s) 1313, 1462
PspPI GGNCC 3 cut(s) 240, 1312, 1745
PsuI RGATCY 2 cut(s) 20, 1165
PsyI GACNNNGTC 1 cut(s) 148
RruI TCGCGA 1 cut(s) 1575
RsaI GTAC 2 cut(s) 1217, 1815
RsaNI GTAC 2 cut(s) 1216, 1814
SacI GAGCTC 1 cut(s) 289
SaqAI TTAA 8 cut(s) 651, 798, 1173, 1226, 1388, 1638, 1868, 1945
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 8 cut(s) 20, 103, 343, 438, 1122, 1165, 1489, 1647
Sau96I GGNCC 3 cut(s) 240, 1312, 1745
SchI GAGTC 1 cut(s) 667
ScrFI CCNGG 2 cut(s) 374, 541
SduI GDGCHC 4 cut(s) 289, 308, 421, 1687
SfaNI GCATC 3 cut(s) 1079, 1637, 1833
SfoI GGCGCC 1 cut(s) 1462
SinI GGWCC 1 cut(s) 1745
SmlI CTYRAG 2 cut(s) 953, 1379
SmoI CTYRAG 2 cut(s) 953, 1379
SnaBI TACGTA 1 cut(s) 1215
SsiI CCGC 1 cut(s) 316
SspDI GGCGCC 1 cut(s) 1460
SspI AATATT 2 cut(s) 802, 1440
SspMI CTAG 2 cut(s) 857, 1163
SstI GAGCTC 1 cut(s) 289
StyD4I CCNGG 2 cut(s) 372, 539
StyI CCWWGG 1 cut(s) 1014
TaaI ACNGT 6 cut(s) 328, 697, 901, 1304, 1538, 1882
TaiI ACGT 3 cut(s) 713, 792, 1217
TaqI TCGA 5 cut(s) 225, 403, 1533, 1631, 1908
TfiI GAWTC 2 cut(s) 681, 1139
Tru1I TTAA 8 cut(s) 651, 798, 1173, 1226, 1388, 1638, 1868, 1945
Tru9I TTAA 8 cut(s) 651, 798, 1173, 1226, 1388, 1638, 1868, 1945
TscAI CASTG 2 cut(s) 904, 1692
TseFI GTSAC 4 cut(s) 391, 790, 895, 1661
TseI GCWGC 1 cut(s) 212
Tsp45I GTSAC 4 cut(s) 391, 790, 895, 1661
TspDTI ATGAA 8 cut(s) 393, 626, 683, 707, 779, 1301, 1607, 1842
TspGWI ACGGA 2 cut(s) 1271, 1737
TspRI CASTG 2 cut(s) 904, 1692
Tth111I GACNNNGTC 1 cut(s) 148
Van91I CCANNNNNTGG 1 cut(s) 1733
VneI GTGCAC 2 cut(s) 304, 1683
VpaK11BI GGWCC 1 cut(s) 1745
VspI ATTAAT 1 cut(s) 1226
XapI RAATTY 5 cut(s) 832, 918, 1204, 1272, 1849
XbaI TCTAGA 1 cut(s) 1162
XmnI GAANNNNTTC 1 cut(s) 491
XspI CTAG 2 cut(s) 857, 1163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.