Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0004806

Physical Location & Seq

Genomic Coordinates Reverse (-)

30167420 .. 30169402

Gene Structure 1983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023929

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGAGTACGCTCCGATCGTCGACGCCATTGATGACGAGCTCGTCGCCTTCGCCGTCGCGGAAGCAGCAAGGATTGCTCTGATGATCAGTCGCCAACGAGCTAGAGCGAGAGAGAGAGAGAGTTTCAGACGACGACTTCGACATCGCCACCATCAGACAAGGAGGGTTGGTTTTGGTGATCGGGTGAGTGAAGGGGGTGGACTAGATTTGATTTTGGACTGCGATGGCTTTGCTTGCATCATTGCTGGGGCATCTTGCGGCTTGGATACACGGATTCTTCCCTGGTTTAGGACAACGGCTGGCTACGAGTGGTCTGGAGATGATATGCAGCAGGTTGTGGTGGCAGCCGATGCACGGGTGGCCAGGCCGGAGGAGGTGTGTGTCACTGGAGGGAATGGCTTCATCGACCATGGTCAGAGTCACCTCCATCTTCCGCAGCGGCTAGATCATCATCCTTGTCATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.29

Weight (kDa)

6.29

Isoelectric Point (pI)

45.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17525
fragaria_vesca	FvH4_7g03710 FvH4_7g03710 FvH4_7g03710
malus_domestica	MD05G1037900.v1.1 MD10G1041700.v1.1
prunus_persica	Prupe.2G066000_v2.0.a1
pyrus_communis	pycom05g02810 pycom10g02880
rosa_chinensis	RchiOBHm_Chr1g0326501 RchiOBHm_Chr1g0326531 RchiOBHm_Chr1g0326571 RchiOBHm_Chr1g0326581
rosa_laevigata	RLG00000005572 RLG00000006170 RLG00000023929 RLG00000030068
rosa_multiflora	Rmu_sc0001355.1_g000018
rosa_roxburghii	Rroxscaffold_2G00146300 Rroxscaffold_4G00323710 Rroxscaffold_4G00327680
rosa_rugosa	Rorug01G0061000
rosa_samantha	Rh1BG062600 Rh1BG062800 Rh1CG075400 Rh1DG082100 Rh1DG082200 Rh1DG082400 Rh7BG001800 Rh7DG001700
rosa_wichuraiana	Rw1G006130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	41
Acc36I	ACCTGC	1 cut(s)	322
AccI	GTMKAC	1 cut(s)	21
AccII	CGCG	1 cut(s)	59
AciI	CCGC	4 cut(s)	59, 258, 434, 439
AcoI	YGGCCR	1 cut(s)	360
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	2 cut(s)	288, 354
AjnI	CCWGG	2 cut(s)	281, 362
AluBI	AGCT	2 cut(s)	40, 101
AluI	AGCT	2 cut(s)	40, 101
Alw21I	GWGCWC	1 cut(s)	42
AoxI	GGCC	2 cut(s)	360, 365
ApeKI	GCWGC	4 cut(s)	65, 328, 344, 436
ArsI	GACNNNNNNTTYG	2 cut(s)	120, 152
Asp700I	GAANNNNTTC	1 cut(s)	398
AsuHPI	GGTGA	3 cut(s)	188, 196, 413
BalI	TGGCCA	1 cut(s)	362
BanII	GRGCYC	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	4 cut(s)	77, 340, 356, 448
BccI	CCATC	3 cut(s)	159, 218, 435
BceAI	ACGGC	2 cut(s)	38, 312
BcgI	CGANNNNNNTGC	2 cut(s)	212, 246
BciT130I	CCWGG	2 cut(s)	283, 364
BciVI	GTATCC	1 cut(s)	259
BclI	TGATCA	1 cut(s)	84
BfaI	CTAG	3 cut(s)	102, 203, 443
BfuAI	ACCTGC	1 cut(s)	322
BfuI	GTATCC	1 cut(s)	259
BisI	GCNGC	6 cut(s)	66, 259, 329, 345, 437, 440
BlsI	GCNGC	6 cut(s)	67, 260, 330, 346, 438, 441
Bme1390I	CCNGG	2 cut(s)	283, 364
BmrFI	CCNGG	2 cut(s)	283, 364
BmsI	GCATC	3 cut(s)	246, 260, 340
BoxI	GACNNNNGTC	1 cut(s)	411
BpmI	CTGGAG	2 cut(s)	336, 408
BsaBI	GATNNNNATC	1 cut(s)	450
BsaHI	GRCGYC	1 cut(s)	24
BsaJI	CCNNGG	2 cut(s)	281, 409
BsaXI	ACNNNNNCTCC	4 cut(s)	154, 184, 362, 392
Bsc4I	CCNNNNNNNGG	2 cut(s)	288, 354
Bse1I	ACTGG	1 cut(s)	391
Bse3DI	GCAATG	1 cut(s)	240
Bse8I	GATNNNNATC	1 cut(s)	450
BseBI	CCWGG	2 cut(s)	283, 364
BseDI	CCNNGG	2 cut(s)	281, 409
BseGI	GGATG	2 cut(s)	451, 460
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	2 cut(s)	288, 354
BseMI	GCAATG	1 cut(s)	240
BseNI	ACTGG	1 cut(s)	391
BseRI	GAGGAG	1 cut(s)	386
BseXI	GCAGC	4 cut(s)	77, 340, 356, 448
BseYI	CCCAGC	1 cut(s)	245
Bsh1236I	CGCG	1 cut(s)	59
Bsh1285I	CGRYCG	1 cut(s)	18
BshFI	GGCC	2 cut(s)	362, 367
BsiEI	CGRYCG	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	368
BslI	CCNNNNNNNGG	2 cut(s)	288, 354
BsnI	GGCC	2 cut(s)	362, 367
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	4 cut(s)	15, 84, 178, 445
Bsp19I	CCATGG	1 cut(s)	409
BspACI	CCGC	4 cut(s)	59, 258, 434, 439
BspANI	GGCC	2 cut(s)	362, 367
BspFNI	CGCG	1 cut(s)	59
BspMI	ACCTGC	1 cut(s)	322
BsrDI	GCAATG	1 cut(s)	240
BsrI	ACTGG	1 cut(s)	391
BssECI	CCNNGG	2 cut(s)	281, 409
BssMI	GATC	4 cut(s)	15, 84, 178, 445
BssNI	GRCGYC	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	409
Bst2UI	CCWGG	2 cut(s)	283, 364
BstACI	GRCGYC	1 cut(s)	24
BstAPI	GCANNNNNTGC	2 cut(s)	74, 350
BstC8I	GCNNGC	2 cut(s)	235, 301
BstDSI	CCRYGG	1 cut(s)	409
BstENI	CCTNNNNNAGG	1 cut(s)	286
BstF5I	GGATG	2 cut(s)	451, 460
BstFNI	CGCG	1 cut(s)	59
BstKTI	GATC	4 cut(s)	18, 87, 181, 448
BstMBI	GATC	4 cut(s)	15, 84, 178, 445
BstMCI	CGRYCG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 74, 234, 350, 359
BstNI	CCWGG	2 cut(s)	283, 364
BstPAI	GACNNNNGTC	1 cut(s)	411
BstSCI	CCNGG	2 cut(s)	281, 362
BstUI	CGCG	1 cut(s)	59
BstV1I	GCAGC	4 cut(s)	77, 340, 356, 448
BsuI	GTATCC	1 cut(s)	259
BsuRI	GGCC	2 cut(s)	362, 367
BtgI	CCRYGG	1 cut(s)	409
BtgZI	GCGATG	2 cut(s)	128, 237
BtsCI	GGATG	2 cut(s)	451, 460
BtsIMutI	CAGTG	1 cut(s)	384
BveI	ACCTGC	1 cut(s)	322
Cac8I	GCNNGC	2 cut(s)	235, 301
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	1 cut(s)	410
CviQI	GTAC	1 cut(s)	7
DpnI	GATC	4 cut(s)	17, 86, 180, 447
DpnII	GATC	4 cut(s)	15, 84, 178, 445
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
EaeI	YGGCCR	1 cut(s)	360
Ecl136II	GAGCTC	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	409
Eco24I	GRGCYC	1 cut(s)	42
Eco53kI	GAGCTC	1 cut(s)	40
EcoICRI	GAGCTC	1 cut(s)	40
EcoNI	CCTNNNNNAGG	1 cut(s)	286
EcoRII	CCWGG	2 cut(s)	281, 362
EcoT14I	CCWWGG	1 cut(s)	409
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	409
FaeI	CATG	1 cut(s)	413
FaiI	YATR	3 cut(s)	326, 411, 466
FatI	CATG	1 cut(s)	409
FbaI	TGATCA	1 cut(s)	84
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	6 cut(s)	66, 259, 329, 345, 437, 440
FokI	GGATG	2 cut(s)	438, 447
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	6 cut(s)	66, 259, 329, 345, 437, 440
FspBI	CTAG	3 cut(s)	102, 203, 443
GluI	GCNGC	6 cut(s)	66, 259, 329, 345, 437, 440
GsaI	CCCAGC	1 cut(s)	249
GsuI	CTGGAG	2 cut(s)	336, 408
HaeIII	GGCC	2 cut(s)	362, 367
HapII	CCGG	1 cut(s)	368
HgaI	GACGC	1 cut(s)	32
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	1 cut(s)	413
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HinfI	GANTC	2 cut(s)	274, 418
HpaII	CCGG	1 cut(s)	368
HphI	GGTGA	3 cut(s)	188, 196, 413
Hpy166II	GTNNAC	2 cut(s)	22, 200
Hpy188I	TCNGA	5 cut(s)	15, 81, 128, 156, 417
Hpy188III	TCNNGA	1 cut(s)	315
Hpy8I	GTNNAC	2 cut(s)	22, 200
Hpy99I	CGWCG	5 cut(s)	23, 26, 47, 59, 135
HpyAV	CCTTC	2 cut(s)	58, 185
HpyCH4V	TGCA	3 cut(s)	237, 328, 353
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 74, 234, 350, 359
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	1 cut(s)	413
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	4 cut(s)	15, 84, 178, 445
LmnI	GCTCC	1 cut(s)	16
Lsp1109I	GCAGC	4 cut(s)	77, 340, 356, 448
LweI	GCATC	3 cut(s)	246, 260, 340
MaeI	CTAG	3 cut(s)	102, 203, 443
MaeIII	GTNAC	2 cut(s)	382, 419
MalI	GATC	4 cut(s)	17, 86, 180, 447
MboI	GATC	4 cut(s)	15, 84, 178, 445
MboII	GAAGA	2 cut(s)	269, 422
MhlI	GDGCHC	1 cut(s)	42
MlsI	TGGCCA	1 cut(s)	362
MluNI	TGGCCA	1 cut(s)	362
MlyI	GAGTC	1 cut(s)	427
MnlI	CCTC	5 cut(s)	156, 364, 367, 383, 434
Mox20I	TGGCCA	1 cut(s)	362
MroXI	GAANNNNTTC	1 cut(s)	398
MscI	TGGCCA	1 cut(s)	362
Msp20I	TGGCCA	1 cut(s)	362
MspA1I	CMGCKG	1 cut(s)	439
MspI	CCGG	1 cut(s)	368
MspR9I	CCNGG	2 cut(s)	283, 364
MvaI	CCWGG	2 cut(s)	283, 364
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	5 cut(s)	65, 74, 234, 350, 359
NcoI	CCATGG	1 cut(s)	409
NdeII	GATC	4 cut(s)	15, 84, 178, 445
NlaIII	CATG	1 cut(s)	413
NmuCI	GTSAC	2 cut(s)	382, 419
PcsI	WCGNNNNNNNCGW	3 cut(s)	15, 51, 136
PdmI	GAANNNNTTC	1 cut(s)	398
PfeI	GAWTC	1 cut(s)	274
PkrI	GCNGC	6 cut(s)	67, 260, 330, 346, 438, 441
Ple19I	CGATCG	1 cut(s)	18
PleI	GAGTC	1 cut(s)	426
PpsI	GAGTC	1 cut(s)	426
PshAI	GACNNNNGTC	1 cut(s)	411
Psp124BI	GAGCTC	1 cut(s)	42
Psp6I	CCWGG	2 cut(s)	281, 362
PspFI	CCCAGC	1 cut(s)	245
PspGI	CCWGG	2 cut(s)	281, 362
PvuI	CGATCG	1 cut(s)	18
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SacI	GAGCTC	1 cut(s)	42
SalI	GTCGAC	1 cut(s)	20
SatI	GCNGC	6 cut(s)	66, 259, 329, 345, 437, 440
Sau3AI	GATC	4 cut(s)	15, 84, 178, 445
SchI	GAGTC	1 cut(s)	427
ScrFI	CCNGG	2 cut(s)	283, 364
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	5 cut(s)	42, 103, 336, 378, 426
SfaNI	GCATC	3 cut(s)	246, 260, 340
SgrDI	CGTCGACG	1 cut(s)	20
SsiI	CCGC	4 cut(s)	59, 258, 434, 439
SspMI	CTAG	3 cut(s)	102, 203, 443
SstI	GAGCTC	1 cut(s)	42
StyD4I	CCNGG	2 cut(s)	281, 362
StyI	CCWWGG	1 cut(s)	409
TaqI	TCGA	3 cut(s)	21, 139, 405
TauI	GCSGC	2 cut(s)	261, 442
TfiI	GAWTC	1 cut(s)	274
TscAI	CASTG	1 cut(s)	391
TseFI	GTSAC	2 cut(s)	382, 419
TseI	GCWGC	4 cut(s)	65, 328, 344, 436
Tsp45I	GTSAC	2 cut(s)	382, 419
TspDTI	ATGAA	1 cut(s)	391
TspGWI	ACGGA	1 cut(s)	286
TspRI	CASTG	1 cut(s)	391
XagI	CCTNNNNNAGG	1 cut(s)	286
XmiI	GTMKAC	1 cut(s)	21
XmnI	GAANNNNTTC	1 cut(s)	398
XspI	CTAG	3 cut(s)	102, 203, 443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.