RLG00000006170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0004806
Physical Location & Seq
Reverse (-)
4899312 .. 4899797
486 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006170

Sequence Viewer

Length: 306 bp
ATGAATCACAGAACATACCAAAAGTATAATTCAAGACCAATTACAATCCTTACTGAATGTAATCAAGTTTGGATTCCGAGTCCGATTGCGAATCGGAGTCGTCGGTTTCGGATGGGTTTGGGGTTTTCACTGCGAATCAGAGACATGGAGTACGCTCCGATCGTCGACACCATTGATGACGAGCTCGTCGCCTTCGTCGCCGCGGAAGCAGTAAGGATTGCTTTGATGATCAGTCGCCGGCGAGCTAGAGCCAGAGAGAGAGAGAGAGTTTCAAACGATGACTTCGACATCGCCACCATCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.88

Weight (kDa)

10.32

Isoelectric Point (pI)

54.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 185
AccI GTMKAC 1 cut(s) 165
AccII CGCG 1 cut(s) 203
AciI CCGC 2 cut(s) 201, 203
AfaI GTAC 1 cut(s) 152
AgsI TTSAA 2 cut(s) 33, 273
AluBI AGCT 2 cut(s) 184, 245
AluI AGCT 2 cut(s) 184, 245
Alw21I GWGCWC 1 cut(s) 186
Alw26I GTCTC 1 cut(s) 135
BanII GRGCYC 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 186
BccI CCATC 2 cut(s) 106, 305
BclI TGATCA 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 1 cut(s) 246
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
BsaJI CCNNGG 1 cut(s) 201
Bse118I RCCGGY 1 cut(s) 237
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 1 cut(s) 117
Bsh1236I CGCG 1 cut(s) 203
Bsh1285I CGRYCG 1 cut(s) 162
BsiEI CGRYCG 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 186
BsiSI CCGG 1 cut(s) 238
BsmAI GTCTC 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 186
Bsp143I GATC 2 cut(s) 159, 228
BspACI CCGC 2 cut(s) 201, 203
BspFNI CGCG 1 cut(s) 203
BsrFI RCCGGY 1 cut(s) 237
BssAI RCCGGY 1 cut(s) 237
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 2 cut(s) 159, 228
BstC8I GCNNGC 2 cut(s) 239, 243
BstDSI CCRYGG 1 cut(s) 201
BstF5I GGATG 1 cut(s) 117
BstFNI CGCG 1 cut(s) 203
BstKTI GATC 2 cut(s) 162, 231
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 2 cut(s) 159, 228
BstMCI CGRYCG 1 cut(s) 162
BstMWI GCNNNNNNNGC 2 cut(s) 197, 206
BstUI CGCG 1 cut(s) 203
BtgI CCRYGG 1 cut(s) 201
BtgZI GCGATG 1 cut(s) 274
BtsCI GGATG 1 cut(s) 117
BtsI GCAGTG 1 cut(s) 128
BtsIMutI CAGTG 1 cut(s) 128
Cac8I GCNNGC 2 cut(s) 239, 243
Cfr10I RCCGGY 1 cut(s) 237
Cfr42I CCGCGG 1 cut(s) 204
Csp6I GTAC 1 cut(s) 151
CviAII CATG 1 cut(s) 145
CviJI RGCY 3 cut(s) 184, 245, 251
CviKI_1 RGCY 3 cut(s) 184, 245, 251
CviQI GTAC 1 cut(s) 151
DpnI GATC 2 cut(s) 161, 230
DpnII GATC 2 cut(s) 159, 228
DrdI GACNNNNNNGTC 1 cut(s) 185
DseDI GACNNNNNNGTC 1 cut(s) 185
Ecl136II GAGCTC 1 cut(s) 184
Eco24I GRGCYC 1 cut(s) 186
Eco53kI GAGCTC 1 cut(s) 184
EcoICRI GAGCTC 1 cut(s) 184
EcoT38I GRGCYC 1 cut(s) 186
FaeI CATG 1 cut(s) 148
FaiI YATR 3 cut(s) 16, 27, 146
FalI AAGNNNNNCTT 2 cut(s) 205, 237
FatI CATG 1 cut(s) 144
FbaI TGATCA 1 cut(s) 228
FblI GTMKAC 1 cut(s) 165
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 1 cut(s) 124
FriOI GRGCYC 1 cut(s) 186
Fsp4HI GCNGC 1 cut(s) 201
FspBI CTAG 1 cut(s) 246
GluI GCNGC 1 cut(s) 201
HapII CCGG 1 cut(s) 238
Hin1II CATG 1 cut(s) 148
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HinfI GANTC 6 cut(s) 4, 73, 79, 91, 97, 135
HpaII CCGG 1 cut(s) 238
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 7 cut(s) 78, 84, 96, 111, 140, 159, 302
Hpy188III TCNNGA 1 cut(s) 33
Hpy8I GTNNAC 1 cut(s) 166
Hpy99I CGWCG 4 cut(s) 105, 167, 191, 200
HpyAV CCTTC 1 cut(s) 202
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 206
Hsp92II CATG 1 cut(s) 148
KroI GCCGGC 1 cut(s) 237
KroNI GCCGGC 1 cut(s) 239
Ksp22I TGATCA 1 cut(s) 228
KspI CCGCGG 1 cut(s) 204
Kzo9I GATC 2 cut(s) 159, 228
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 2 cut(s) 251, 265
MaeI CTAG 1 cut(s) 246
MalI GATC 2 cut(s) 161, 230
MboI GATC 2 cut(s) 159, 228
MhlI GDGCHC 1 cut(s) 186
MluCI AATT 2 cut(s) 28, 39
MlyI GAGTC 2 cut(s) 88, 106
MreI CGCCGGCG 1 cut(s) 237
MroNI GCCGGC 1 cut(s) 237
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 1 cut(s) 238
MvnI CGCG 1 cut(s) 203
MwoI GCNNNNNNNGC 2 cut(s) 197, 206
NaeI GCCGGC 1 cut(s) 239
NdeII GATC 2 cut(s) 159, 228
NgoMIV GCCGGC 1 cut(s) 237
NlaIII CATG 1 cut(s) 148
PcsI WCGNNNNNNNCGW 3 cut(s) 159, 192, 282
PdiI GCCGGC 1 cut(s) 239
PfeI GAWTC 4 cut(s) 4, 73, 91, 135
PkrI GCNGC 1 cut(s) 202
Ple19I CGATCG 1 cut(s) 162
PleI GAGTC 2 cut(s) 87, 105
PpsI GAGTC 2 cut(s) 87, 105
Psp124BI GAGCTC 1 cut(s) 186
PvuI CGATCG 1 cut(s) 162
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
SacI GAGCTC 1 cut(s) 186
SacII CCGCGG 1 cut(s) 204
SalI GTCGAC 1 cut(s) 164
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 2 cut(s) 159, 228
SchI GAGTC 2 cut(s) 88, 106
SduI GDGCHC 1 cut(s) 186
SetI ASST 2 cut(s) 186, 247
Sfr303I CCGCGG 1 cut(s) 204
SgrAI CRCCGGYG 1 cut(s) 237
SgrBI CCGCGG 1 cut(s) 204
Sse9I AATT 2 cut(s) 28, 39
SsiI CCGC 2 cut(s) 201, 203
SspMI CTAG 1 cut(s) 246
SstI GAGCTC 1 cut(s) 186
TaqI TCGA 2 cut(s) 165, 285
TasI AATT 2 cut(s) 28, 39
TauI GCSGC 1 cut(s) 203
TfiI GAWTC 4 cut(s) 4, 73, 91, 135
TscAI CASTG 1 cut(s) 135
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 135
XmiI GTMKAC 1 cut(s) 165
XspI CTAG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.