Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004806

Physical Location & Seq

Genomic Coordinates Forward (+)

15088977 .. 15091605

Gene Structure 2629 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55620

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGTTGGATAAAGCTCTTGATCTGTTTAATGATATGAAAACAGATGGCATCAATTGGAATTTTGCTGCATATGATACGTTAATAAGAGGCTTGTGTTCAGGAGGAAGAACTGAAGATGGGTTAAAAATTTTGGATTTGATGAATGAGAGCAAAGATGGTTGTAGGGGTCAAATAGGTCCTTTTAATAGTGTCTTGTATGGCATGTATAAGGAAAAACGTTTGGACGAAGCACTTGAGTTTCTTGCCAATATGGGTAAACTATTTCCCAGAGCTGTTAATAGGAGCTTTAGGATTTTAGGTTTCTGTGAGGAGGGTGCCACTGAGAATGCAAAGAAGGTCTATGATCAGATGATTGTGGAAAGGGCAGTCCCATGTGTTTTGATTTATGACTATCTAATCCATATATTTTGCCAACAAGGGTGTGTTCGTCAAGCCTATGAGCTTATGAATGAGATGATTGCTCATTGTTACTTTCCTGTTTCATCAACTTTCAATGTTCTGATTAACGGGTTTTGTGAGCAAGGAAAAGTTGGTAGTGCGCTAAAGCTCCTCGATGAGATGATTGGTAGAGGTTGTTTACCTGATATAGAAAGTTATAGTCATTTGGTAGGTGCTTTTTGCCAGAAGGGGGATTTTCAGAAAGCTTTAAAACTCGTTTTGCAAATGGTAGGAAAGGGTATCACTCCTGATTATTTCACATGGAACTCGTTGCTTCTTTGTTCAAGTCGAGAGACTGTATGGTTAAACAGCAAAAGTATGTTTTATGTGAACAATCAATTACGTTGTATTATTGAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

266

Amino Acids

30.12

Weight (kDa)

5.72

Isoelectric Point (pI)

28.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	2 - 32	2e-06	PPR repeat family
PPR_long	PF17177	107 - 241	5.6e-09	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	157 - 187	4.8e-10	PPR repeat
PPR_2	PF13041	161 - 208	6.4e-14	PPR repeat family
PPR	PF01535	162 - 192	2.1e-08	PPR repeat
PPR_3	PF13812	182 - 238	2.6e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	190 - 223	6.7e-07	PPR repeat
PPR_2	PF13041	194 - 238	5.8e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17525
fragaria_vesca	FvH4_7g03710 FvH4_7g03710 FvH4_7g03710
malus_domestica	MD05G1037900.v1.1 MD10G1041700.v1.1
prunus_persica	Prupe.2G066000_v2.0.a1
pyrus_communis	pycom05g02810 pycom10g02880
rosa_chinensis	RchiOBHm_Chr1g0326501 RchiOBHm_Chr1g0326531 RchiOBHm_Chr1g0326571 RchiOBHm_Chr1g0326581
rosa_laevigata	RLG00000005572 RLG00000006170 RLG00000023929 RLG00000030068
rosa_multiflora	Rmu_sc0001355.1_g000018
rosa_roxburghii	Rroxscaffold_2G00146300 Rroxscaffold_4G00323710 Rroxscaffold_4G00327680
rosa_rugosa	Rorug01G0061000
rosa_samantha	Rh1BG062600 Rh1BG062800 Rh1CG075400 Rh1DG082100 Rh1DG082200 Rh1DG082400 Rh7BG001800 Rh7DG001700
rosa_wichuraiana	Rw1G006130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	314
AclI	AACGTT	1 cut(s)	217
AcsI	RAATTY	2 cut(s)	58, 126
AcuI	CTGAAG	1 cut(s)	132
AfiI	CCNNNNNNNGG	1 cut(s)	628
AgsI	TTSAA	2 cut(s)	493, 723
AluBI	AGCT	6 cut(s)	14, 272, 285, 442, 547, 644
AluI	AGCT	6 cut(s)	14, 272, 285, 442, 547, 644
Alw26I	GTCTC	1 cut(s)	725
ApeKI	GCWGC	1 cut(s)	65
ApoI	RAATTY	2 cut(s)	58, 126
AspLEI	GCGC	1 cut(s)	541
AspS9I	GGNCC	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	176
BanI	GGYRCC	1 cut(s)	314
BbvI	GCAGC	1 cut(s)	52
BccI	CCATC	3 cut(s)	38, 110, 149
BclI	TGATCA	1 cut(s)	343
BcoDI	GTCTC	1 cut(s)	725
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
Bme18I	GGWCC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	316
BmsI	GCATC	1 cut(s)	57
BpuEI	CTTGAG	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	1 cut(s)	628
BseLI	CCNNNNNNNGG	1 cut(s)	628
BseMII	CTCAG	1 cut(s)	312
BseRI	GAGGAG	2 cut(s)	323, 539
BseXI	GCAGC	1 cut(s)	52
BshNI	GGYRCC	1 cut(s)	314
BslFI	GGGAC	1 cut(s)	353
BslI	CCNNNNNNNGG	1 cut(s)	628
BsmAI	GTCTC	1 cut(s)	725
BsmFI	GGGAC	1 cut(s)	353
BsmI	GAATGC	1 cut(s)	331
Bsp143I	GATC	2 cut(s)	19, 343
BspCNI	CTCAG	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	316
BspT107I	GGYRCC	1 cut(s)	314
BssMI	GATC	2 cut(s)	19, 343
Bst4CI	ACNGT	1 cut(s)	736
BstDEI	CTNAG	1 cut(s)	321
BstHHI	GCGC	1 cut(s)	541
BstKTI	GATC	2 cut(s)	22, 346
BstMAI	GTCTC	1 cut(s)	725
BstMBI	GATC	2 cut(s)	19, 343
BstNSI	RCATGY	1 cut(s)	205
BstV1I	GCAGC	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	318
CfoI	GCGC	1 cut(s)	541
Cfr13I	GGNCC	1 cut(s)	176
CviAII	CATG	3 cut(s)	202, 372, 699
CviJI	RGCY	9 cut(s)	14, 90, 272, 285, 434, 442, 547, 644, 797
CviKI_1	RGCY	9 cut(s)	14, 90, 272, 285, 434, 442, 547, 644, 797
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	2 cut(s)	21, 345
DpnII	GATC	2 cut(s)	19, 343
DraI	TTTAAA	1 cut(s)	648
Eco47I	GGWCC	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	132
EcoO109I	RGGNCCY	1 cut(s)	176
FaeI	CATG	3 cut(s)	205, 375, 702
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	3 cut(s)	201, 371, 698
FauNDI	CATATG	1 cut(s)	70
FbaI	TGATCA	1 cut(s)	343
Fnu4HI	GCNGC	1 cut(s)	66
Fsp4HI	GCNGC	1 cut(s)	66
GlaI	GCGC	1 cut(s)	540
GluI	GCNGC	1 cut(s)	66
HhaI	GCGC	1 cut(s)	541
Hin1II	CATG	3 cut(s)	205, 375, 702
Hin6I	GCGC	1 cut(s)	539
HinP1I	GCGC	1 cut(s)	539
HindIII	AAGCTT	1 cut(s)	642
Hpy166II	GTNNAC	3 cut(s)	257, 578, 769
Hpy188I	TCNGA	3 cut(s)	348, 501, 639
Hpy188III	TCNNGA	4 cut(s)	17, 99, 686, 728
Hpy8I	GTNNAC	3 cut(s)	257, 578, 769
HpyAV	CCTTC	2 cut(s)	328, 619
HpyCH4III	ACNGT	1 cut(s)	736
HpyCH4IV	ACGT	3 cut(s)	77, 217, 781
HpyCH4V	TGCA	3 cut(s)	68, 329, 661
HpyF3I	CTNAG	1 cut(s)	321
HpySE526I	ACGT	3 cut(s)	77, 217, 781
Hsp92II	CATG	3 cut(s)	205, 375, 702
HspAI	GCGC	1 cut(s)	539
Ksp22I	TGATCA	1 cut(s)	343
Kzo9I	GATC	2 cut(s)	19, 343
LmnI	GCTCC	2 cut(s)	282, 552
LpnPI	CCDG	6 cut(s)	84, 280, 489, 594, 635, 699
Lsp1109I	GCAGC	1 cut(s)	52
LweI	GCATC	1 cut(s)	57
MaeII	ACGT	3 cut(s)	77, 217, 781
MaeIII	GTNAC	1 cut(s)	467
MalI	GATC	2 cut(s)	21, 345
MboI	GATC	2 cut(s)	19, 343
MboII	GAAGA	2 cut(s)	117, 125
MfeI	CAATTG	1 cut(s)	52
MluCI	AATT	4 cut(s)	52, 58, 126, 776
MnlI	CCTC	7 cut(s)	80, 95, 301, 304, 560, 563, 787
MseI	TTAA	9 cut(s)	27, 80, 122, 183, 276, 504, 647, 743, 799
MunI	CAATTG	1 cut(s)	52
Mva1269I	GAATGC	1 cut(s)	331
NdeI	CATATG	1 cut(s)	70
NdeII	GATC	2 cut(s)	19, 343
NlaIII	CATG	3 cut(s)	205, 375, 702
NlaIV	GGNNCC	1 cut(s)	316
NspI	RCATGY	1 cut(s)	205
PctI	GAATGC	1 cut(s)	331
PkrI	GCNGC	1 cut(s)	67
PpuMI	RGGWCCY	1 cut(s)	176
Psp1406I	AACGTT	1 cut(s)	217
Psp5II	RGGWCCY	1 cut(s)	176
PspN4I	GGNNCC	1 cut(s)	316
PspPI	GGNCC	1 cut(s)	176
PspPPI	RGGWCCY	1 cut(s)	176
SaqAI	TTAA	9 cut(s)	27, 80, 122, 183, 276, 504, 647, 743, 799
SatI	GCNGC	1 cut(s)	66
Sau3AI	GATC	2 cut(s)	19, 343
Sau96I	GGNCC	1 cut(s)	176
SfaNI	GCATC	1 cut(s)	57
SinI	GGWCC	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	4 cut(s)	52, 58, 126, 776
TaaI	ACNGT	1 cut(s)	736
TaiI	ACGT	3 cut(s)	80, 220, 784
TaqI	TCGA	2 cut(s)	552, 727
TasI	AATT	4 cut(s)	52, 58, 126, 776
Tru1I	TTAA	9 cut(s)	27, 80, 122, 183, 276, 504, 647, 743, 799
Tru9I	TTAA	9 cut(s)	27, 80, 122, 183, 276, 504, 647, 743, 799
TscAI	CASTG	1 cut(s)	325
TseI	GCWGC	1 cut(s)	65
TspDTI	ATGAA	4 cut(s)	50, 155, 461, 471
TspRI	CASTG	1 cut(s)	325
VpaK11BI	GGWCC	1 cut(s)	176
XapI	RAATTY	2 cut(s)	58, 126
XceI	RCATGY	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.