Prupe.2G066000_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
9077117 .. 9083604
6488 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G066000.1

Sequence Viewer

Length: 1938 bp
ATGCCAGCCATTTATAATCCTTTGAAGCTTCAAATTTTGTGTTTCAGATGTTTTCTTAGAAACATGTCATCGTCATCTTCTTCATTGTCGTCGTCGTCAGCATCATCATCTTCTTCATTGTCATCGTCGTCGGCATCATCATCATCCATTGCAATTCCATCCCATAAGCACATAGCCCATCTTCTGTTAGACCAAAAATCAGCATCCCAAGCCCTCCAAACCTTCAAATGGGCCTCCAAACTCCCCAACTTCATCCACTCTCCCTCCACTTACCGTGCTCTCATCCACAAGCTATGCACATTCCACTGCTTTGACACTGTTCACCAATTGCTCGACGAAATGCCAACCTCAATTGGGCAACCCCCAGATGAAGACATCTTTGTCACCATCATTCAAGGTCTCGGCCGTGCCCACATGGTAAAACAAGTTATCAACGTGCTTGACTTGATTTACAAGTATGAAAAAATGCCTTCTTTGAAGGTATTCAATTCCATACTTGATGTTCTTGTGAAGGAAGATATAGATATAGCTAGGGAGTTTTATAGGAAGAAGATGATGGAAAGTGGCGTTCAAGGCGATGACTATACTTTCGGTATCTTGATGAAAGGACTTTGCTTGACGAATCGAATTGGTGATGGTTTTAAGCTTTTGCAAGCGATGAAGTCTCGGGGAATTACCCCAAATACTGTGGTCTATAACACGTTGCTTCATGCACTTTGCAAGAACAAGAAAGTTGGGAGAGCGAGAAGCTTGATGAATGAGATGGAAGCACCCAATGATGTGACTTTTAATGTTTTGATATCTGGTTATTGTGGAGAAGAGAATTTAGTGCAAGCTCTTGTTTTGCTAGAGAAGTGCTTTGGTTTGGGGTTTGTGCCTGATATTGTCACTGTAACTAAGGTGTTGGAAATTCTTTGCAGTGATGGCCGTGTAATGGAGGCTGTCAAGGTTATAGGGAGAGTGGAGAACAAGGGAGGATTGGTGGATGTTGTAGCTTATAACACCTTAATTAAGGGTTTCTGTAGATTAGGGAAAGCAAAACTCGGTCTTCGCATTGTGAAGGAGATGGAGAGAAAGGGATGCCTTCCAAATGTTGATACTTACAATGTATTGATCTCTGGTTTTTGTGAGTCTGGGATGTTGGATATGGCGCTTGATATGTTTAATGATATGAAAACAGATGGCATCAACTGGAATTTTGTTACGTATGATACATTAATTAGATATTTGTGTTCCGGAGGAAGGACGAAAAAAGGGTTTGAAATTTTAGAATTAATGAATGAAAGAAAAGGTGGTTCCCTTGGCCAAATTTCTCCTTATAATAGTGTGTTATATGGCCTGTATAAGGAACATCGTTTGGACGAAGCACTTGAGTTTCTAACCAATATGGGGAAACTATTTCCTAGAGCTGTTGATAGAAGCTTGAGAATTTTAGGTTTCTGTGAGGAGGGCGACACAGAGAATGCCAAGAGAGTTTATAATCAGATGCTTATGGAAAGGGGAGTTCCAAGTGTTTTTATTTATGACTGTCTAATCCATAGATATTGCCAAGAAGGGTGTATTCGTGAAGCCTTTGAGCTATTGAATGAGATGATTGCTCATGGTTACTTTCCTCTTGCGTTGACATTTAATTCTCTGATAAGTGGGTTTTGCGAGCAAGGAAAAGTTGGTAGTGCACTGAAGCTCCTGGAAGACATGGTTGGGAGAGGTTGTTCACCCGATGCTAGAAGTTATAGTCCTTTGGTGGCCGCTCTTTGCCATATGGGGGATTTTCAGAAAGCTTTGAGACTTGTTTTGCAAATGGTAGAGAAGGGTGTCATTCCAGATTATTTTACGTGGAACTCGTTGCTTATTTGTTTAAGTCAAGAGACTGTATGGTTGAAGGGCAAAAGTATATTGGATGTAAATAACTTGGTACACTGTATTATCGAGAATTAA

Protein Analysis

646

Amino Acids

72.09

Weight (kDa)

7.93

Isoelectric Point (pI)

35.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 15, 999, 1320, 1479
AasI GACNNNNNNGTC 1 cut(s) 380
AccBSI CCGCTC 1 cut(s) 1751
AccIII TCCGGA 1 cut(s) 1235
AciI CCGC 1 cut(s) 1749
AcoI YGGCCR 4 cut(s) 403, 925, 1303, 1746
AcsI RAATTY 7 cut(s) 33, 823, 909, 1195, 1263, 1308, 1428
AcuI CTGAAG 1 cut(s) 1700
AfaI GTAC 1 cut(s) 1917
AfiI CCNNNNNNNGG 7 cut(s) 228, 354, 934, 1242, 1345, 1389, 1765
AflIII ACRYGT 2 cut(s) 63, 699
AjnI CCWGG 1 cut(s) 1686
AjuI GAANNNNNNNTTGG 2 cut(s) 1683, 1715
AloI GAACNNNNNNTCC 2 cut(s) 1696, 1728
Alw21I GWGCWC 2 cut(s) 280, 1678
Alw26I GTCTC 4 cut(s) 404, 669, 1780, 1862
Alw44I GTGCAC 1 cut(s) 1674
Ama87I CYCGRG 1 cut(s) 666
Aor13HI TCCGGA 1 cut(s) 1235
AoxI GGCC 6 cut(s) 231, 403, 925, 1303, 1336, 1746
ApaLI GTGCAC 1 cut(s) 1674
ApoI RAATTY 7 cut(s) 33, 823, 909, 1195, 1263, 1308, 1428
ArsI GACNNNNNNTTYG 2 cut(s) 572, 604
AseI ATTAAT 2 cut(s) 1217, 1274
Asp700I GAANNNNTTC 1 cut(s) 482
AspLEI GCGC 1 cut(s) 1153
AspS9I GGNCC 1 cut(s) 231
AsuHPI GGTGA 4 cut(s) 314, 376, 644, 1707
AvaI CYCGRG 1 cut(s) 666
BaeGI GKGCMC 2 cut(s) 412, 1678
BalI TGGCCA 1 cut(s) 1305
BbsI GAAGAC 3 cut(s) 378, 1040, 1698
Bbv12I GWGCWC 2 cut(s) 280, 1678
BccI CCATC 9 cut(s) 166, 186, 395, 550, 629, 757, 917, 1060, 1175
BceAI ACGGC 2 cut(s) 390, 912
BciT130I CCWGG 1 cut(s) 1688
BcoDI GTCTC 4 cut(s) 404, 669, 1780, 1862
BfaI CTAG 4 cut(s) 531, 848, 1404, 1725
BfmI CTRYAG 1 cut(s) 1021
BfoI RGCGCY 1 cut(s) 1154
BisI GCNGC 1 cut(s) 1749
BlsI GCNGC 1 cut(s) 1750
Bme1390I CCNGG 1 cut(s) 1688
BmeT110I CYCGRG 1 cut(s) 666
BmgT120I GGNCC 1 cut(s) 231
BmiI GGNNCC 1 cut(s) 1297
BmrFI CCNGG 1 cut(s) 1688
BmsI GCATC 7 cut(s) 110, 143, 212, 1070, 1194, 1476, 1711
BpiI GAAGAC 3 cut(s) 378, 1040, 1698
BpuEI CTTGAG 2 cut(s) 1391, 1444
BsaAI YACGTR 2 cut(s) 1206, 1836
BsaI GGTCTC 1 cut(s) 404
BsaJI CCNNGG 1 cut(s) 1300
BsaWI WCCGGW 1 cut(s) 1235
BsaXI ACNNNNNCTCC 8 cut(s) 248, 278, 966, 996, 1668, 1696, 1698, 1726
Bsc4I CCNNNNNNNGG 7 cut(s) 228, 354, 934, 1242, 1345, 1389, 1765
Bse1I ACTGG 1 cut(s) 1196
Bse3DI GCAATG 1 cut(s) 147
BseAI TCCGGA 1 cut(s) 1235
BseBI CCWGG 1 cut(s) 1688
BseDI CCNNGG 1 cut(s) 1300
BseGI GGATG 9 cut(s) 143, 158, 203, 252, 282, 991, 1085, 1143, 1906
BseLI CCNNNNNNNGG 7 cut(s) 228, 354, 934, 1242, 1345, 1389, 1765
BseMI GCAATG 1 cut(s) 147
BseNI ACTGG 1 cut(s) 1196
BseRI GAGGAG 1 cut(s) 1460
BseSI GKGCMC 2 cut(s) 412, 1678
BseX3I CGGCCG 1 cut(s) 403
Bsh1285I CGRYCG 1 cut(s) 406
BshFI GGCC 6 cut(s) 233, 405, 927, 1305, 1338, 1748
BsiEI CGRYCG 1 cut(s) 406
BsiHKAI GWGCWC 2 cut(s) 280, 1678
BsiHKCI CYCGRG 1 cut(s) 666
BsiSI CCGG 1 cut(s) 1236
BslI CCNNNNNNNGG 7 cut(s) 228, 354, 934, 1242, 1345, 1389, 1765
BsmAI GTCTC 4 cut(s) 404, 669, 1780, 1862
BsmI GAATGC 1 cut(s) 1468
BsnI GGCC 6 cut(s) 233, 405, 927, 1305, 1338, 1748
Bso31I GGTCTC 1 cut(s) 404
BsoBI CYCGRG 1 cut(s) 666
Bsp1286I GDGCHC 3 cut(s) 280, 412, 1678
Bsp13I TCCGGA 1 cut(s) 1235
Bsp143I GATC 1 cut(s) 1113
BspACI CCGC 1 cut(s) 1749
BspANI GGCC 6 cut(s) 233, 405, 927, 1305, 1338, 1748
BspEI TCCGGA 1 cut(s) 1235
BspLI GGNNCC 1 cut(s) 1297
BspTNI GGTCTC 1 cut(s) 404
BsrBI CCGCTC 1 cut(s) 1751
BsrDI GCAATG 1 cut(s) 147
BsrI ACTGG 1 cut(s) 1196
BssECI CCNNGG 1 cut(s) 1300
BssMI GATC 1 cut(s) 1113
BssT1I CCWWGG 1 cut(s) 1300
Bst2UI CCWGG 1 cut(s) 1688
Bst4CI ACNGT 7 cut(s) 275, 319, 688, 892, 1529, 1873, 1922
Bst6I CTCTTC 1 cut(s) 813
BstBAI YACGTR 2 cut(s) 1206, 1836
BstC8I GCNNGC 4 cut(s) 6, 654, 834, 1655
BstDEI CTNAG 2 cut(s) 56, 897
BstENI CCTNNNNNAGG 1 cut(s) 1343
BstF5I GGATG 9 cut(s) 143, 158, 203, 252, 282, 991, 1085, 1143, 1906
BstH2I RGCGCY 1 cut(s) 1154
BstHHI GCGC 1 cut(s) 1153
BstKTI GATC 1 cut(s) 1116
BstMAI GTCTC 4 cut(s) 404, 669, 1780, 1862
BstMBI GATC 1 cut(s) 1113
BstMCI CGRYCG 1 cut(s) 406
BstMWI GCNNNNNNNGC 3 cut(s) 209, 573, 924
BstNI CCWGG 1 cut(s) 1688
BstNSI RCATGY 1 cut(s) 67
BstSCI CCNGG 1 cut(s) 1686
BstSFI CTRYAG 1 cut(s) 1021
BstSLI GKGCMC 2 cut(s) 412, 1678
BstSNI TACGTA 1 cut(s) 1206
BstV2I GAAGAC 3 cut(s) 378, 1040, 1698
BstZI CGGCCG 1 cut(s) 403
BsuRI GGCC 6 cut(s) 233, 405, 927, 1305, 1338, 1748
BtgZI GCGATG 2 cut(s) 591, 671
BtsCI GGATG 9 cut(s) 143, 158, 203, 252, 282, 991, 1085, 1143, 1906
BtsI GCAGTG 2 cut(s) 304, 925
BtsIMutI CAGTG 6 cut(s) 304, 315, 888, 925, 1676, 1918
Cac8I GCNNGC 4 cut(s) 6, 654, 834, 1655
CfoI GCGC 1 cut(s) 1153
Cfr13I GGNCC 1 cut(s) 231
Csp6I GTAC 1 cut(s) 1916
CspCI CAANNNNNGTGG 2 cut(s) 669, 704
CviAII CATG 5 cut(s) 64, 415, 710, 1601, 1696
CviQI GTAC 1 cut(s) 1916
DdeI CTNAG 2 cut(s) 56, 897
DpnI GATC 1 cut(s) 1115
DpnII GATC 1 cut(s) 1113
DrdI GACNNNNNNGTC 1 cut(s) 380
DseDI GACNNNNNNGTC 1 cut(s) 380
EaeI YGGCCR 4 cut(s) 403, 925, 1303, 1746
EagI CGGCCG 1 cut(s) 403
Eam1104I CTCTTC 1 cut(s) 813
EarI CTCTTC 1 cut(s) 813
EclXI CGGCCG 1 cut(s) 403
Eco105I TACGTA 1 cut(s) 1206
Eco130I CCWWGG 1 cut(s) 1300
Eco31I GGTCTC 1 cut(s) 404
Eco32I GATATC 1 cut(s) 801
Eco52I CGGCCG 1 cut(s) 403
Eco57I CTGAAG 1 cut(s) 1700
Eco88I CYCGRG 1 cut(s) 666
EcoNI CCTNNNNNAGG 1 cut(s) 1343
EcoRII CCWGG 1 cut(s) 1686
EcoRV GATATC 1 cut(s) 801
EcoT14I CCWWGG 1 cut(s) 1300
ErhI CCWWGG 1 cut(s) 1300
FaeI CATG 5 cut(s) 67, 418, 713, 1604, 1699
FatI CATG 5 cut(s) 63, 414, 709, 1600, 1695
FauNDI CATATG 1 cut(s) 1761
Fnu4HI GCNGC 1 cut(s) 1749
FokI GGATG 9 cut(s) 130, 145, 190, 239, 269, 998, 1092, 1150, 1913
Fsp4HI GCNGC 1 cut(s) 1749
FspBI CTAG 4 cut(s) 531, 848, 1404, 1725
GlaI GCGC 1 cut(s) 1152
GluI GCNGC 1 cut(s) 1749
HaeII RGCGCY 1 cut(s) 1154
HaeIII GGCC 6 cut(s) 233, 405, 927, 1305, 1338, 1748
HapII CCGG 1 cut(s) 1236
HhaI GCGC 1 cut(s) 1153
Hin1II CATG 5 cut(s) 67, 418, 713, 1604, 1699
Hin6I GCGC 1 cut(s) 1151
HinP1I GCGC 1 cut(s) 1151
HincII GTYRAC 1 cut(s) 1623
HindII GTYRAC 1 cut(s) 1623
HindIII AAGCTT 5 cut(s) 26, 644, 748, 1420, 1779
HinfI GANTC 2 cut(s) 622, 1130
HpaII CCGG 1 cut(s) 1236
HphI GGTGA 4 cut(s) 314, 376, 644, 1707
Hpy166II GTNNAC 5 cut(s) 322, 1623, 1676, 1715, 1918
Hpy188I TCNGA 4 cut(s) 47, 1485, 1638, 1776
Hpy188III TCNNGA 6 cut(s) 598, 1236, 1565, 1823, 1865, 1930
Hpy8I GTNNAC 5 cut(s) 322, 1623, 1676, 1715, 1918
Hpy99I CGWCG 5 cut(s) 94, 97, 130, 133, 338
HpyCH4III ACNGT 7 cut(s) 275, 319, 688, 892, 1529, 1873, 1922
HpyCH4IV ACGT 4 cut(s) 435, 701, 1205, 1835
HpyCH4V TGCA 9 cut(s) 152, 297, 652, 713, 720, 832, 918, 1676, 1798
HpyF10VI GCNNNNNNNGC 3 cut(s) 209, 573, 924
HpyF3I CTNAG 2 cut(s) 56, 897
HpySE526I ACGT 4 cut(s) 435, 701, 1205, 1835
Hsp92II CATG 5 cut(s) 67, 418, 713, 1604, 1699
HspAI GCGC 1 cut(s) 1151
Kpn2I TCCGGA 1 cut(s) 1235
Kzo9I GATC 1 cut(s) 1113
LmnI GCTCC 1 cut(s) 1689
LweI GCATC 7 cut(s) 110, 143, 212, 1070, 1194, 1476, 1711
MaeI CTAG 4 cut(s) 531, 848, 1404, 1725
MaeII ACGT 4 cut(s) 435, 701, 1205, 1835
MaeIII GTNAC 6 cut(s) 382, 781, 886, 892, 1201, 1604
MalI GATC 1 cut(s) 1115
MbiI CCGCTC 1 cut(s) 1751
MboI GATC 1 cut(s) 1113
MfeI CAATTG 2 cut(s) 326, 351
MhlI GDGCHC 3 cut(s) 280, 412, 1678
MlsI TGGCCA 1 cut(s) 1305
MluNI TGGCCA 1 cut(s) 1305
MlyI GAGTC 1 cut(s) 1139
MmeI TCCRAC 2 cut(s) 885, 1122
Mox20I TGGCCA 1 cut(s) 1305
MroI TCCGGA 1 cut(s) 1235
MroXI GAANNNNTTC 1 cut(s) 482
MscI TGGCCA 1 cut(s) 1305
Msp20I TGGCCA 1 cut(s) 1305
MspI CCGG 1 cut(s) 1236
MspR9I CCNGG 1 cut(s) 1688
MunI CAATTG 2 cut(s) 326, 351
Mva1269I GAATGC 1 cut(s) 1468
MvaI CCWGG 1 cut(s) 1688
MwoI GCNNNNNNNGC 3 cut(s) 209, 573, 924
NdeI CATATG 1 cut(s) 1761
NdeII GATC 1 cut(s) 1113
NlaIII CATG 5 cut(s) 67, 418, 713, 1604, 1699
NlaIV GGNNCC 1 cut(s) 1297
NmeAIII GCCGAG 1 cut(s) 381
NmuCI GTSAC 3 cut(s) 382, 781, 886
NspI RCATGY 1 cut(s) 67
PacI TTAATTAA 1 cut(s) 1011
PciI ACATGT 1 cut(s) 63
PcsI WCGNNNNNNNCGW 1 cut(s) 1841
PctI GAATGC 1 cut(s) 1468
PdmI GAANNNNTTC 1 cut(s) 482
PfeI GAWTC 1 cut(s) 622
PfoI TCCNGGA 1 cut(s) 1686
PkrI GCNGC 1 cut(s) 1750
PleI GAGTC 1 cut(s) 1138
PpsI GAGTC 1 cut(s) 1138
Ppu21I YACGTR 2 cut(s) 1206, 1836
PscI ACATGT 1 cut(s) 63
PshBI ATTAAT 2 cut(s) 1217, 1274
PsiI TTATAA 4 cut(s) 15, 999, 1320, 1479
Psp6I CCWGG 1 cut(s) 1686
PspGI CCWGG 1 cut(s) 1686
PspN4I GGNNCC 1 cut(s) 1297
PspPI GGNCC 1 cut(s) 231
RsaI GTAC 1 cut(s) 1917
RsaNI GTAC 1 cut(s) 1916
SatI GCNGC 1 cut(s) 1749
Sau3AI GATC 1 cut(s) 1113
Sau96I GGNCC 1 cut(s) 231
SchI GAGTC 1 cut(s) 1139
ScrFI CCNGG 1 cut(s) 1688
SduI GDGCHC 3 cut(s) 280, 412, 1678
SfaNI GCATC 7 cut(s) 110, 143, 212, 1070, 1194, 1476, 1711
SfcI CTRYAG 1 cut(s) 1021
SmlI CTYRAG 2 cut(s) 1370, 1423
SmoI CTYRAG 2 cut(s) 1370, 1423
SnaBI TACGTA 1 cut(s) 1206
SsiI CCGC 1 cut(s) 1749
SspMI CTAG 4 cut(s) 531, 848, 1404, 1725
StyD4I CCNGG 1 cut(s) 1686
StyI CCWWGG 1 cut(s) 1300
TaaI ACNGT 7 cut(s) 275, 319, 688, 892, 1529, 1873, 1922
TaiI ACGT 4 cut(s) 438, 704, 1208, 1838
TaqI TCGA 3 cut(s) 333, 625, 1929
TaqII GACCGA 1 cut(s) 1034
TauI GCSGC 1 cut(s) 1751
TfiI GAWTC 1 cut(s) 622
TscAI CASTG 6 cut(s) 311, 322, 895, 925, 1683, 1925
TseFI GTSAC 3 cut(s) 382, 781, 886
Tsp45I GTSAC 3 cut(s) 382, 781, 886
TspRI CASTG 6 cut(s) 311, 322, 895, 925, 1683, 1925
VneI GTGCAC 1 cut(s) 1674
VspI ATTAAT 2 cut(s) 1217, 1274
XagI CCTNNNNNAGG 1 cut(s) 1343
XapI RAATTY 7 cut(s) 33, 823, 909, 1195, 1263, 1308, 1428
XceI RCATGY 1 cut(s) 67
XmnI GAANNNNTTC 1 cut(s) 482
XspI CTAG 4 cut(s) 531, 848, 1404, 1725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.