Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G17525 |
| fragaria_vesca | FvH4_7g03710 FvH4_7g03710 FvH4_7g03710 |
| malus_domestica | MD05G1037900.v1.1 MD10G1041700.v1.1 |
| prunus_persica | Prupe.2G066000_v2.0.a1 |
| pyrus_communis | pycom05g02810 pycom10g02880 |
| rosa_chinensis | RchiOBHm_Chr1g0326501 RchiOBHm_Chr1g0326531 RchiOBHm_Chr1g0326571 RchiOBHm_Chr1g0326581 |
| rosa_laevigata | RLG00000005572 RLG00000006170 RLG00000023929 RLG00000030068 |
| rosa_multiflora | Rmu_sc0001355.1_g000018 |
| rosa_roxburghii | Rroxscaffold_2G00146300 Rroxscaffold_4G00323710 Rroxscaffold_4G00327680 |
| rosa_rugosa | Rorug01G0061000 |
| rosa_samantha | Rh1BG062600 Rh1BG062800 Rh1CG075400 Rh1DG082100 Rh1DG082200 Rh1DG082400 Rh7BG001800 Rh7DG001700 |
| rosa_wichuraiana | Rw1G006130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 15, 999, 1320, 1479 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 380 |
| AccBSI | CCGCTC | 1 cut(s) | 1751 |
| AccIII | TCCGGA | 1 cut(s) | 1235 |
| AciI | CCGC | 1 cut(s) | 1749 |
| AcoI | YGGCCR | 4 cut(s) | 403, 925, 1303, 1746 |
| AcsI | RAATTY | 7 cut(s) | 33, 823, 909, 1195, 1263, 1308, 1428 |
| AcuI | CTGAAG | 1 cut(s) | 1700 |
| AfaI | GTAC | 1 cut(s) | 1917 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 228, 354, 934, 1242, 1345, 1389, 1765 |
| AflIII | ACRYGT | 2 cut(s) | 63, 699 |
| AjnI | CCWGG | 1 cut(s) | 1686 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1683, 1715 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1696, 1728 |
| Alw21I | GWGCWC | 2 cut(s) | 280, 1678 |
| Alw26I | GTCTC | 4 cut(s) | 404, 669, 1780, 1862 |
| Alw44I | GTGCAC | 1 cut(s) | 1674 |
| Ama87I | CYCGRG | 1 cut(s) | 666 |
| Aor13HI | TCCGGA | 1 cut(s) | 1235 |
| AoxI | GGCC | 6 cut(s) | 231, 403, 925, 1303, 1336, 1746 |
| ApaLI | GTGCAC | 1 cut(s) | 1674 |
| ApoI | RAATTY | 7 cut(s) | 33, 823, 909, 1195, 1263, 1308, 1428 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 572, 604 |
| AseI | ATTAAT | 2 cut(s) | 1217, 1274 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 482 |
| AspLEI | GCGC | 1 cut(s) | 1153 |
| AspS9I | GGNCC | 1 cut(s) | 231 |
| AsuHPI | GGTGA | 4 cut(s) | 314, 376, 644, 1707 |
| AvaI | CYCGRG | 1 cut(s) | 666 |
| BaeGI | GKGCMC | 2 cut(s) | 412, 1678 |
| BalI | TGGCCA | 1 cut(s) | 1305 |
| BbsI | GAAGAC | 3 cut(s) | 378, 1040, 1698 |
| Bbv12I | GWGCWC | 2 cut(s) | 280, 1678 |
| BccI | CCATC | 9 cut(s) | 166, 186, 395, 550, 629, 757, 917, 1060, 1175 |
| BceAI | ACGGC | 2 cut(s) | 390, 912 |
| BciT130I | CCWGG | 1 cut(s) | 1688 |
| BcoDI | GTCTC | 4 cut(s) | 404, 669, 1780, 1862 |
| BfaI | CTAG | 4 cut(s) | 531, 848, 1404, 1725 |
| BfmI | CTRYAG | 1 cut(s) | 1021 |
| BfoI | RGCGCY | 1 cut(s) | 1154 |
| BisI | GCNGC | 1 cut(s) | 1749 |
| BlsI | GCNGC | 1 cut(s) | 1750 |
| Bme1390I | CCNGG | 1 cut(s) | 1688 |
| BmeT110I | CYCGRG | 1 cut(s) | 666 |
| BmgT120I | GGNCC | 1 cut(s) | 231 |
| BmiI | GGNNCC | 1 cut(s) | 1297 |
| BmrFI | CCNGG | 1 cut(s) | 1688 |
| BmsI | GCATC | 7 cut(s) | 110, 143, 212, 1070, 1194, 1476, 1711 |
| BpiI | GAAGAC | 3 cut(s) | 378, 1040, 1698 |
| BpuEI | CTTGAG | 2 cut(s) | 1391, 1444 |
| BsaAI | YACGTR | 2 cut(s) | 1206, 1836 |
| BsaI | GGTCTC | 1 cut(s) | 404 |
| BsaJI | CCNNGG | 1 cut(s) | 1300 |
| BsaWI | WCCGGW | 1 cut(s) | 1235 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 248, 278, 966, 996, 1668, 1696, 1698, 1726 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 228, 354, 934, 1242, 1345, 1389, 1765 |
| Bse1I | ACTGG | 1 cut(s) | 1196 |
| Bse3DI | GCAATG | 1 cut(s) | 147 |
| BseAI | TCCGGA | 1 cut(s) | 1235 |
| BseBI | CCWGG | 1 cut(s) | 1688 |
| BseDI | CCNNGG | 1 cut(s) | 1300 |
| BseGI | GGATG | 9 cut(s) | 143, 158, 203, 252, 282, 991, 1085, 1143, 1906 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 228, 354, 934, 1242, 1345, 1389, 1765 |
| BseMI | GCAATG | 1 cut(s) | 147 |
| BseNI | ACTGG | 1 cut(s) | 1196 |
| BseRI | GAGGAG | 1 cut(s) | 1460 |
| BseSI | GKGCMC | 2 cut(s) | 412, 1678 |
| BseX3I | CGGCCG | 1 cut(s) | 403 |
| Bsh1285I | CGRYCG | 1 cut(s) | 406 |
| BshFI | GGCC | 6 cut(s) | 233, 405, 927, 1305, 1338, 1748 |
| BsiEI | CGRYCG | 1 cut(s) | 406 |
| BsiHKAI | GWGCWC | 2 cut(s) | 280, 1678 |
| BsiHKCI | CYCGRG | 1 cut(s) | 666 |
| BsiSI | CCGG | 1 cut(s) | 1236 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 228, 354, 934, 1242, 1345, 1389, 1765 |
| BsmAI | GTCTC | 4 cut(s) | 404, 669, 1780, 1862 |
| BsmI | GAATGC | 1 cut(s) | 1468 |
| BsnI | GGCC | 6 cut(s) | 233, 405, 927, 1305, 1338, 1748 |
| Bso31I | GGTCTC | 1 cut(s) | 404 |
| BsoBI | CYCGRG | 1 cut(s) | 666 |
| Bsp1286I | GDGCHC | 3 cut(s) | 280, 412, 1678 |
| Bsp13I | TCCGGA | 1 cut(s) | 1235 |
| Bsp143I | GATC | 1 cut(s) | 1113 |
| BspACI | CCGC | 1 cut(s) | 1749 |
| BspANI | GGCC | 6 cut(s) | 233, 405, 927, 1305, 1338, 1748 |
| BspEI | TCCGGA | 1 cut(s) | 1235 |
| BspLI | GGNNCC | 1 cut(s) | 1297 |
| BspTNI | GGTCTC | 1 cut(s) | 404 |
| BsrBI | CCGCTC | 1 cut(s) | 1751 |
| BsrDI | GCAATG | 1 cut(s) | 147 |
| BsrI | ACTGG | 1 cut(s) | 1196 |
| BssECI | CCNNGG | 1 cut(s) | 1300 |
| BssMI | GATC | 1 cut(s) | 1113 |
| BssT1I | CCWWGG | 1 cut(s) | 1300 |
| Bst2UI | CCWGG | 1 cut(s) | 1688 |
| Bst4CI | ACNGT | 7 cut(s) | 275, 319, 688, 892, 1529, 1873, 1922 |
| Bst6I | CTCTTC | 1 cut(s) | 813 |
| BstBAI | YACGTR | 2 cut(s) | 1206, 1836 |
| BstC8I | GCNNGC | 4 cut(s) | 6, 654, 834, 1655 |
| BstDEI | CTNAG | 2 cut(s) | 56, 897 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1343 |
| BstF5I | GGATG | 9 cut(s) | 143, 158, 203, 252, 282, 991, 1085, 1143, 1906 |
| BstH2I | RGCGCY | 1 cut(s) | 1154 |
| BstHHI | GCGC | 1 cut(s) | 1153 |
| BstKTI | GATC | 1 cut(s) | 1116 |
| BstMAI | GTCTC | 4 cut(s) | 404, 669, 1780, 1862 |
| BstMBI | GATC | 1 cut(s) | 1113 |
| BstMCI | CGRYCG | 1 cut(s) | 406 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 209, 573, 924 |
| BstNI | CCWGG | 1 cut(s) | 1688 |
| BstNSI | RCATGY | 1 cut(s) | 67 |
| BstSCI | CCNGG | 1 cut(s) | 1686 |
| BstSFI | CTRYAG | 1 cut(s) | 1021 |
| BstSLI | GKGCMC | 2 cut(s) | 412, 1678 |
| BstSNI | TACGTA | 1 cut(s) | 1206 |
| BstV2I | GAAGAC | 3 cut(s) | 378, 1040, 1698 |
| BstZI | CGGCCG | 1 cut(s) | 403 |
| BsuRI | GGCC | 6 cut(s) | 233, 405, 927, 1305, 1338, 1748 |
| BtgZI | GCGATG | 2 cut(s) | 591, 671 |
| BtsCI | GGATG | 9 cut(s) | 143, 158, 203, 252, 282, 991, 1085, 1143, 1906 |
| BtsI | GCAGTG | 2 cut(s) | 304, 925 |
| BtsIMutI | CAGTG | 6 cut(s) | 304, 315, 888, 925, 1676, 1918 |
| Cac8I | GCNNGC | 4 cut(s) | 6, 654, 834, 1655 |
| CfoI | GCGC | 1 cut(s) | 1153 |
| Cfr13I | GGNCC | 1 cut(s) | 231 |
| Csp6I | GTAC | 1 cut(s) | 1916 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 669, 704 |
| CviAII | CATG | 5 cut(s) | 64, 415, 710, 1601, 1696 |
| CviQI | GTAC | 1 cut(s) | 1916 |
| DdeI | CTNAG | 2 cut(s) | 56, 897 |
| DpnI | GATC | 1 cut(s) | 1115 |
| DpnII | GATC | 1 cut(s) | 1113 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 380 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 380 |
| EaeI | YGGCCR | 4 cut(s) | 403, 925, 1303, 1746 |
| EagI | CGGCCG | 1 cut(s) | 403 |
| Eam1104I | CTCTTC | 1 cut(s) | 813 |
| EarI | CTCTTC | 1 cut(s) | 813 |
| EclXI | CGGCCG | 1 cut(s) | 403 |
| Eco105I | TACGTA | 1 cut(s) | 1206 |
| Eco130I | CCWWGG | 1 cut(s) | 1300 |
| Eco31I | GGTCTC | 1 cut(s) | 404 |
| Eco32I | GATATC | 1 cut(s) | 801 |
| Eco52I | CGGCCG | 1 cut(s) | 403 |
| Eco57I | CTGAAG | 1 cut(s) | 1700 |
| Eco88I | CYCGRG | 1 cut(s) | 666 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1343 |
| EcoRII | CCWGG | 1 cut(s) | 1686 |
| EcoRV | GATATC | 1 cut(s) | 801 |
| EcoT14I | CCWWGG | 1 cut(s) | 1300 |
| ErhI | CCWWGG | 1 cut(s) | 1300 |
| FaeI | CATG | 5 cut(s) | 67, 418, 713, 1604, 1699 |
| FatI | CATG | 5 cut(s) | 63, 414, 709, 1600, 1695 |
| FauNDI | CATATG | 1 cut(s) | 1761 |
| Fnu4HI | GCNGC | 1 cut(s) | 1749 |
| FokI | GGATG | 9 cut(s) | 130, 145, 190, 239, 269, 998, 1092, 1150, 1913 |
| Fsp4HI | GCNGC | 1 cut(s) | 1749 |
| FspBI | CTAG | 4 cut(s) | 531, 848, 1404, 1725 |
| GlaI | GCGC | 1 cut(s) | 1152 |
| GluI | GCNGC | 1 cut(s) | 1749 |
| HaeII | RGCGCY | 1 cut(s) | 1154 |
| HaeIII | GGCC | 6 cut(s) | 233, 405, 927, 1305, 1338, 1748 |
| HapII | CCGG | 1 cut(s) | 1236 |
| HhaI | GCGC | 1 cut(s) | 1153 |
| Hin1II | CATG | 5 cut(s) | 67, 418, 713, 1604, 1699 |
| Hin6I | GCGC | 1 cut(s) | 1151 |
| HinP1I | GCGC | 1 cut(s) | 1151 |
| HincII | GTYRAC | 1 cut(s) | 1623 |
| HindII | GTYRAC | 1 cut(s) | 1623 |
| HindIII | AAGCTT | 5 cut(s) | 26, 644, 748, 1420, 1779 |
| HinfI | GANTC | 2 cut(s) | 622, 1130 |
| HpaII | CCGG | 1 cut(s) | 1236 |
| HphI | GGTGA | 4 cut(s) | 314, 376, 644, 1707 |
| Hpy166II | GTNNAC | 5 cut(s) | 322, 1623, 1676, 1715, 1918 |
| Hpy188I | TCNGA | 4 cut(s) | 47, 1485, 1638, 1776 |
| Hpy188III | TCNNGA | 6 cut(s) | 598, 1236, 1565, 1823, 1865, 1930 |
| Hpy8I | GTNNAC | 5 cut(s) | 322, 1623, 1676, 1715, 1918 |
| Hpy99I | CGWCG | 5 cut(s) | 94, 97, 130, 133, 338 |
| HpyCH4III | ACNGT | 7 cut(s) | 275, 319, 688, 892, 1529, 1873, 1922 |
| HpyCH4IV | ACGT | 4 cut(s) | 435, 701, 1205, 1835 |
| HpyCH4V | TGCA | 9 cut(s) | 152, 297, 652, 713, 720, 832, 918, 1676, 1798 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 209, 573, 924 |
| HpyF3I | CTNAG | 2 cut(s) | 56, 897 |
| HpySE526I | ACGT | 4 cut(s) | 435, 701, 1205, 1835 |
| Hsp92II | CATG | 5 cut(s) | 67, 418, 713, 1604, 1699 |
| HspAI | GCGC | 1 cut(s) | 1151 |
| Kpn2I | TCCGGA | 1 cut(s) | 1235 |
| Kzo9I | GATC | 1 cut(s) | 1113 |
| LmnI | GCTCC | 1 cut(s) | 1689 |
| LweI | GCATC | 7 cut(s) | 110, 143, 212, 1070, 1194, 1476, 1711 |
| MaeI | CTAG | 4 cut(s) | 531, 848, 1404, 1725 |
| MaeII | ACGT | 4 cut(s) | 435, 701, 1205, 1835 |
| MaeIII | GTNAC | 6 cut(s) | 382, 781, 886, 892, 1201, 1604 |
| MalI | GATC | 1 cut(s) | 1115 |
| MbiI | CCGCTC | 1 cut(s) | 1751 |
| MboI | GATC | 1 cut(s) | 1113 |
| MfeI | CAATTG | 2 cut(s) | 326, 351 |
| MhlI | GDGCHC | 3 cut(s) | 280, 412, 1678 |
| MlsI | TGGCCA | 1 cut(s) | 1305 |
| MluNI | TGGCCA | 1 cut(s) | 1305 |
| MlyI | GAGTC | 1 cut(s) | 1139 |
| MmeI | TCCRAC | 2 cut(s) | 885, 1122 |
| Mox20I | TGGCCA | 1 cut(s) | 1305 |
| MroI | TCCGGA | 1 cut(s) | 1235 |
| MroXI | GAANNNNTTC | 1 cut(s) | 482 |
| MscI | TGGCCA | 1 cut(s) | 1305 |
| Msp20I | TGGCCA | 1 cut(s) | 1305 |
| MspI | CCGG | 1 cut(s) | 1236 |
| MspR9I | CCNGG | 1 cut(s) | 1688 |
| MunI | CAATTG | 2 cut(s) | 326, 351 |
| Mva1269I | GAATGC | 1 cut(s) | 1468 |
| MvaI | CCWGG | 1 cut(s) | 1688 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 209, 573, 924 |
| NdeI | CATATG | 1 cut(s) | 1761 |
| NdeII | GATC | 1 cut(s) | 1113 |
| NlaIII | CATG | 5 cut(s) | 67, 418, 713, 1604, 1699 |
| NlaIV | GGNNCC | 1 cut(s) | 1297 |
| NmeAIII | GCCGAG | 1 cut(s) | 381 |
| NmuCI | GTSAC | 3 cut(s) | 382, 781, 886 |
| NspI | RCATGY | 1 cut(s) | 67 |
| PacI | TTAATTAA | 1 cut(s) | 1011 |
| PciI | ACATGT | 1 cut(s) | 63 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1841 |
| PctI | GAATGC | 1 cut(s) | 1468 |
| PdmI | GAANNNNTTC | 1 cut(s) | 482 |
| PfeI | GAWTC | 1 cut(s) | 622 |
| PfoI | TCCNGGA | 1 cut(s) | 1686 |
| PkrI | GCNGC | 1 cut(s) | 1750 |
| PleI | GAGTC | 1 cut(s) | 1138 |
| PpsI | GAGTC | 1 cut(s) | 1138 |
| Ppu21I | YACGTR | 2 cut(s) | 1206, 1836 |
| PscI | ACATGT | 1 cut(s) | 63 |
| PshBI | ATTAAT | 2 cut(s) | 1217, 1274 |
| PsiI | TTATAA | 4 cut(s) | 15, 999, 1320, 1479 |
| Psp6I | CCWGG | 1 cut(s) | 1686 |
| PspGI | CCWGG | 1 cut(s) | 1686 |
| PspN4I | GGNNCC | 1 cut(s) | 1297 |
| PspPI | GGNCC | 1 cut(s) | 231 |
| RsaI | GTAC | 1 cut(s) | 1917 |
| RsaNI | GTAC | 1 cut(s) | 1916 |
| SatI | GCNGC | 1 cut(s) | 1749 |
| Sau3AI | GATC | 1 cut(s) | 1113 |
| Sau96I | GGNCC | 1 cut(s) | 231 |
| SchI | GAGTC | 1 cut(s) | 1139 |
| ScrFI | CCNGG | 1 cut(s) | 1688 |
| SduI | GDGCHC | 3 cut(s) | 280, 412, 1678 |
| SfaNI | GCATC | 7 cut(s) | 110, 143, 212, 1070, 1194, 1476, 1711 |
| SfcI | CTRYAG | 1 cut(s) | 1021 |
| SmlI | CTYRAG | 2 cut(s) | 1370, 1423 |
| SmoI | CTYRAG | 2 cut(s) | 1370, 1423 |
| SnaBI | TACGTA | 1 cut(s) | 1206 |
| SsiI | CCGC | 1 cut(s) | 1749 |
| SspMI | CTAG | 4 cut(s) | 531, 848, 1404, 1725 |
| StyD4I | CCNGG | 1 cut(s) | 1686 |
| StyI | CCWWGG | 1 cut(s) | 1300 |
| TaaI | ACNGT | 7 cut(s) | 275, 319, 688, 892, 1529, 1873, 1922 |
| TaiI | ACGT | 4 cut(s) | 438, 704, 1208, 1838 |
| TaqI | TCGA | 3 cut(s) | 333, 625, 1929 |
| TaqII | GACCGA | 1 cut(s) | 1034 |
| TauI | GCSGC | 1 cut(s) | 1751 |
| TfiI | GAWTC | 1 cut(s) | 622 |
| TscAI | CASTG | 6 cut(s) | 311, 322, 895, 925, 1683, 1925 |
| TseFI | GTSAC | 3 cut(s) | 382, 781, 886 |
| Tsp45I | GTSAC | 3 cut(s) | 382, 781, 886 |
| TspRI | CASTG | 6 cut(s) | 311, 322, 895, 925, 1683, 1925 |
| VneI | GTGCAC | 1 cut(s) | 1674 |
| VspI | ATTAAT | 2 cut(s) | 1217, 1274 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1343 |
| XapI | RAATTY | 7 cut(s) | 33, 823, 909, 1195, 1263, 1308, 1428 |
| XceI | RCATGY | 1 cut(s) | 67 |
| XmnI | GAANNNNTTC | 1 cut(s) | 482 |
| XspI | CTAG | 4 cut(s) | 531, 848, 1404, 1725 |