RchiOBHm_Chr1g0326501

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0004806
Physical Location & Seq
Forward (+)
15044734 .. 15050504
5771 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55613

Sequence Viewer

Length: 1863 bp
ATGCTAATCTCCAAACCCTCAAAGCTTCCCCCAATATCTTCTCTCACCCATCTTCTTCGAACTCTCTCATCCATTGCTGTTCCATCTCACAACCACATATCACATCTTCTACTCGAACAAAAATCAGCCACCCAGGTCCTCGACACCTTCCAATGGGCCTCCAAACTCCCCAGCTTCACCCACTCCCCGTCCACTTACCGAGCCCTCATCCACAGGCTATGCACCTTTCGCCGCTTCGACATTGCCCACCAACTGCTCGACGAAATGCCCCACTCAATCGGCCTACCCCCAGATGACCACATTTTCGTCACACTCATTCACGGCCTCGGCCGAGCCCATTTGGTGAAGCAAGTGATCAAGGTGCTTGACTTGGTTCGCAGGTATAACCAGAAACCTTCTCTCAAGATATTCAATTCGATACTTGATGTTCTTGTGAAGGAGGATATAGATATAGCTAGGGAGTTTTATAGGAAGAAGATGGTGGCAAGTGGCGTCAAGGGTGATGGTTATACTTTTGGTATCTTGATGAAAGGTCTTTGTTTGACGAATCGAATTGGTGATGGGTTTAAGCTTTTGCAAGCTGTTAAGTCGAGGGGAGTTGCGCCGAATACTGTGGTTTATAACACATTGCTGCATGCACTTTGCAGGAATGGGAAAGTTGGGAGAGCAAGAAGCTTGATGAATGAGATGGAACATCCCAATGATGTGACTTTTAATATTTTGATATCTGGTTATTGCGGAGAAGAGAATTTAGTGCAGGCGCTTGTTATGTTAGAGAAGTGCTTTGGTCTGGGGTATGTGCCTGATGTTGTCACGACAACCAAGGTGTTGGAAATTCTGTGCAATGATGGTCGCGTAATGGAGGCTGTCAGGGTTATAGAGAGAGTGGAGAGCAATGGAGGGTTGGTTGATGTTGTGGCATATAATACCTTGATTAAGGGTTACTGTCGGTTAGGGAAAGCAAAACTTGGTCTTCGCATTTTGAAGGAGATAGAGAGAAAAGGGTGTCTTCCAAATGTCGATACCTACAATGTCTTGATCTTGGGTTTTTGTGAGTCTGGGATGTTGGATAAAGCTCTTGATCTGTTTAATGATATGAAAACAGATGGCATCAATTGGAATTTTGCTACATATGATACGTTAATAAGAGGCTTGTGTTCAGGAGGAAGAACTGAAGATGGGTTAAAAATTTTGGATTTGATGAATGAGAGCAAAGATGGTTGTAGGGGTCGAATAGGTCCTTTTAATAGTGTCTTGTATGGCATGTATAAGGAAAAACGTTTGGACGAAGCACTTGAGTTTCTTGCCAATATGGATAAACTATTTCCCAGAGCTGTTGATAGGAGCTTTAGGATTTTAGGTTTCTGTGAGGAGGGTGCCACTGAGAATGCAAAGAAGGTCTATGATCAGATGATTGTGGAAAGGGCAGTCCCATGTGTTTTGATTTATGACTATCTAATCCATATATTTTGCCAACAAGGGTGTGTTCGTCAAGCCTTTGAGCTTATGAATGAGATGATTGCTCATTGTTACTTTCCTGTTTCATCGACTTTCAATGTTCTGATTAACGGGTTTTGTGAGCAAGGAAAAGTTGGTAGTGCGCTAAAGCTCCTCGATGAGATGATTGGTAGAGGTTGTTTACCTGATATAGAAAGTTATAGTCATTTGGTAGGTGCTTTTTGCCAGAAGGGGGATTTTCAGAAAGCTTTAAAACTCGTTTTGCAAATGGTAGGAAAGGGTATCACTCCTGATTATTTCACATGGAACTCGTTGCTTCTTTGTTCAAGTCGAGAGACTGTATGGTTAAACAGCAAAAGTATGTTTTATGTGAACAATCAATTACGCTGTATTATTGAGGCTTAA

Protein Analysis

620

Amino Acids

69.7

Weight (kDa)

8.52

Isoelectric Point (pI)

31.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 190 - 246 3.3e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 198 - 231 2.3e-11 PPR repeat
PPR_2 PF13041 202 - 246 1.9e-14 PPR repeat family
PPR PF01535 205 - 231 3.5e-06 PPR repeat
PPR_1 PF12854 232 - 260 3e-06 PPR repeat
TPR_24 PF23276 235 - 330 1e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 301 - 330 6.6e-06 PPR repeat
PPR_3 PF13812 303 - 347 3.7e-11 Pentatricopeptide repeat domain
PPR_2 PF13041 304 - 351 5.3e-16 PPR repeat family
PPR PF01535 306 - 336 6e-07 PPR repeat
PPR_1 PF12854 334 - 367 5.6e-12 PPR repeat
PPR_2 PF13041 341 - 386 7.2e-15 PPR repeat family
PPR PF01535 342 - 371 1.1e-08 PPR repeat
PPR_long PF17177 462 - 595 2.5e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 511 - 541 1.4e-09 PPR repeat
PPR_2 PF13041 515 - 562 2.1e-13 PPR repeat family
PPR PF01535 516 - 546 6.3e-08 PPR repeat
PPR_3 PF13812 536 - 592 9.3e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 544 - 577 2e-06 PPR repeat
PPR_2 PF13041 548 - 592 1.9e-09 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 621
Acc36I ACCTGC 1 cut(s) 369
AccB1I GGYRCC 1 cut(s) 1376
AccII CGCG 1 cut(s) 855
AciI CCGC 2 cut(s) 232, 738
AclI AACGTT 1 cut(s) 1279
AcoI YGGCCR 1 cut(s) 328
AcsI RAATTY 4 cut(s) 748, 834, 1120, 1188
AcuI CTGAAG 1 cut(s) 1194
AcyI GRCGYC 1 cut(s) 492
AfiI CCNNNNNNNGG 2 cut(s) 153, 1690
AgsI TTSAA 4 cut(s) 412, 985, 1555, 1785
AjnI CCWGG 1 cut(s) 132
Alw26I GTCTC 1 cut(s) 1787
AoxI GGCC 4 cut(s) 156, 280, 322, 328
ApeKI GCWGC 1 cut(s) 631
ApoI RAATTY 4 cut(s) 748, 834, 1120, 1188
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
AspLEI GCGC 3 cut(s) 604, 763, 1603
AspS9I GGNCC 3 cut(s) 136, 156, 1238
AsuHPI GGTGA 5 cut(s) 37, 169, 355, 512, 569
AsuII TTCGAA 1 cut(s) 58
AvaII GGWCC 2 cut(s) 136, 1238
BanI GGYRCC 1 cut(s) 1376
BanII GRGCYC 2 cut(s) 205, 337
BbsI GAAGAC 2 cut(s) 965, 1001
BbvI GCAGC 1 cut(s) 618
BceAI ACGGC 1 cut(s) 337
BciT130I CCWGG 1 cut(s) 134
BclI TGATCA 2 cut(s) 354, 1405
BcoDI GTCTC 1 cut(s) 1787
BfaI CTAG 1 cut(s) 456
BfoI RGCGCY 1 cut(s) 764
BfuAI ACCTGC 1 cut(s) 369
BisI GCNGC 2 cut(s) 232, 632
BlsI GCNGC 2 cut(s) 233, 633
Bme1390I CCNGG 1 cut(s) 134
Bme18I GGWCC 2 cut(s) 136, 1238
BmgT120I GGNCC 3 cut(s) 136, 156, 1238
BmiI GGNNCC 1 cut(s) 1378
BmrFI CCNGG 1 cut(s) 134
BmsI GCATC 1 cut(s) 1119
BpiI GAAGAC 2 cut(s) 965, 1001
Bpu14I TTCGAA 1 cut(s) 58
BpuEI CTTGAG 2 cut(s) 386, 1316
BsaHI GRCGYC 1 cut(s) 492
BsaJI CCNNGG 3 cut(s) 132, 325, 822
BsaXI ACNNNNNCTCC 2 cut(s) 891, 921
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 1690
Bse3DI GCAATG 5 cut(s) 72, 240, 626, 850, 901
BseBI CCWGG 1 cut(s) 134
BseDI CCNNGG 3 cut(s) 132, 325, 822
BseGI GGATG 4 cut(s) 68, 207, 694, 1068
BseLI CCNNNNNNNGG 2 cut(s) 153, 1690
BseMI GCAATG 5 cut(s) 72, 240, 626, 850, 901
BseMII CTCAG 1 cut(s) 1374
BseRI GAGGAG 2 cut(s) 1385, 1601
BseX3I CGGCCG 1 cut(s) 328
BseXI GCAGC 1 cut(s) 618
BseYI CCCAGC 1 cut(s) 170
BsgI GTGCAG 1 cut(s) 776
Bsh1236I CGCG 1 cut(s) 855
Bsh1285I CGRYCG 1 cut(s) 331
BshFI GGCC 4 cut(s) 158, 282, 324, 330
BshNI GGYRCC 1 cut(s) 1376
BsiEI CGRYCG 1 cut(s) 331
BslFI GGGAC 1 cut(s) 1415
BslI CCNNNNNNNGG 2 cut(s) 153, 1690
BsmAI GTCTC 1 cut(s) 1787
BsmFI GGGAC 1 cut(s) 1415
BsmI GAATGC 1 cut(s) 1393
BsnI GGCC 4 cut(s) 158, 282, 324, 330
Bsp119I TTCGAA 1 cut(s) 58
Bsp1286I GDGCHC 2 cut(s) 205, 337
Bsp143I GATC 4 cut(s) 354, 1038, 1081, 1405
BspACI CCGC 2 cut(s) 232, 738
BspANI GGCC 4 cut(s) 158, 282, 324, 330
BspCNI CTCAG 1 cut(s) 1375
BspFNI CGCG 1 cut(s) 855
BspLI GGNNCC 1 cut(s) 1378
BspMI ACCTGC 1 cut(s) 369
BspT104I TTCGAA 1 cut(s) 58
BspT107I GGYRCC 1 cut(s) 1376
BsrDI GCAATG 5 cut(s) 72, 240, 626, 850, 901
BssECI CCNNGG 3 cut(s) 132, 325, 822
BssMI GATC 4 cut(s) 354, 1038, 1081, 1405
BssNI GRCGYC 1 cut(s) 492
BssT1I CCWWGG 1 cut(s) 822
Bst2UI CCWGG 1 cut(s) 134
Bst4CI ACNGT 3 cut(s) 613, 947, 1798
Bst6I CTCTTC 1 cut(s) 738
BstACI GRCGYC 1 cut(s) 492
BstBI TTCGAA 1 cut(s) 58
BstC8I GCNNGC 3 cut(s) 579, 636, 759
BstDEI CTNAG 1 cut(s) 1383
BstF5I GGATG 4 cut(s) 68, 207, 694, 1068
BstFNI CGCG 1 cut(s) 855
BstH2I RGCGCY 1 cut(s) 764
BstHHI GCGC 3 cut(s) 604, 763, 1603
BstKTI GATC 4 cut(s) 357, 1041, 1084, 1408
BstMAI GTCTC 1 cut(s) 1787
BstMBI GATC 4 cut(s) 354, 1038, 1081, 1405
BstMCI CGRYCG 1 cut(s) 331
BstMWI GCNNNNNNNGC 1 cut(s) 228
BstNI CCWGG 1 cut(s) 134
BstNSI RCATGY 2 cut(s) 638, 1267
BstSCI CCNGG 1 cut(s) 132
BstUI CGCG 1 cut(s) 855
BstV1I GCAGC 1 cut(s) 618
BstV2I GAAGAC 2 cut(s) 965, 1001
BstXI CCANNNNNNTGG 1 cut(s) 829
BstZI CGGCCG 1 cut(s) 328
BsuRI GGCC 4 cut(s) 158, 282, 324, 330
BtsCI GGATG 4 cut(s) 68, 207, 694, 1068
BtsIMutI CAGTG 1 cut(s) 1380
BveI ACCTGC 1 cut(s) 369
Cac8I GCNNGC 3 cut(s) 579, 636, 759
CfoI GCGC 3 cut(s) 604, 763, 1603
Cfr13I GGNCC 3 cut(s) 136, 156, 1238
CseI GACGC 1 cut(s) 481
CviAII CATG 4 cut(s) 635, 1264, 1434, 1761
DdeI CTNAG 1 cut(s) 1383
DpnI GATC 4 cut(s) 356, 1040, 1083, 1407
DpnII GATC 4 cut(s) 354, 1038, 1081, 1405
DraI TTTAAA 1 cut(s) 1710
EaeI YGGCCR 1 cut(s) 328
EagI CGGCCG 1 cut(s) 328
Eam1104I CTCTTC 1 cut(s) 738
EarI CTCTTC 1 cut(s) 738
EclXI CGGCCG 1 cut(s) 328
Eco130I CCWWGG 1 cut(s) 822
Eco24I GRGCYC 2 cut(s) 205, 337
Eco32I GATATC 1 cut(s) 726
Eco47I GGWCC 2 cut(s) 136, 1238
Eco52I CGGCCG 1 cut(s) 328
Eco57I CTGAAG 1 cut(s) 1194
EcoO109I RGGNCCY 2 cut(s) 136, 1238
EcoRII CCWGG 1 cut(s) 132
EcoRV GATATC 1 cut(s) 726
EcoT14I CCWWGG 1 cut(s) 822
EcoT38I GRGCYC 2 cut(s) 205, 337
ErhI CCWWGG 1 cut(s) 822
FaeI CATG 4 cut(s) 638, 1267, 1437, 1764
FalI AAGNNNNNCTT 4 cut(s) 951, 983, 993, 1025
FaqI GGGAC 1 cut(s) 1415
FatI CATG 4 cut(s) 634, 1263, 1433, 1760
FauNDI CATATG 1 cut(s) 1132
FbaI TGATCA 2 cut(s) 354, 1405
Fnu4HI GCNGC 2 cut(s) 232, 632
FokI GGATG 4 cut(s) 55, 194, 681, 1075
FriOI GRGCYC 2 cut(s) 205, 337
Fsp4HI GCNGC 2 cut(s) 232, 632
FspBI CTAG 1 cut(s) 456
GlaI GCGC 3 cut(s) 603, 762, 1602
GluI GCNGC 2 cut(s) 232, 632
GsaI CCCAGC 1 cut(s) 174
HaeII RGCGCY 1 cut(s) 764
HaeIII GGCC 4 cut(s) 158, 282, 324, 330
HgaI GACGC 1 cut(s) 481
HhaI GCGC 3 cut(s) 604, 763, 1603
Hin1I GRCGYC 1 cut(s) 492
Hin1II CATG 4 cut(s) 638, 1267, 1437, 1764
Hin6I GCGC 3 cut(s) 602, 761, 1601
HinP1I GCGC 3 cut(s) 602, 761, 1601
HindIII AAGCTT 4 cut(s) 23, 569, 673, 1704
HinfI GANTC 2 cut(s) 547, 1055
HphI GGTGA 5 cut(s) 37, 169, 355, 512, 569
Hpy166II GTNNAC 3 cut(s) 192, 1640, 1831
Hpy188I TCNGA 3 cut(s) 1410, 1563, 1701
Hpy188III TCNNGA 8 cut(s) 403, 523, 814, 1036, 1079, 1161, 1748, 1790
Hpy8I GTNNAC 3 cut(s) 192, 1640, 1831
Hpy99I CGWCG 1 cut(s) 263
HpyAV CCTTC 6 cut(s) 157, 405, 430, 979, 1390, 1681
HpyCH4III ACNGT 3 cut(s) 613, 947, 1798
HpyCH4IV ACGT 2 cut(s) 1139, 1279
HpyCH4V TGCA 9 cut(s) 222, 577, 634, 638, 645, 757, 843, 1391, 1723
HpyF10VI GCNNNNNNNGC 1 cut(s) 228
HpyF3I CTNAG 1 cut(s) 1383
HpySE526I ACGT 2 cut(s) 1139, 1279
Hsp92I GRCGYC 1 cut(s) 492
Hsp92II CATG 4 cut(s) 638, 1267, 1437, 1764
HspAI GCGC 3 cut(s) 602, 761, 1601
Ksp22I TGATCA 2 cut(s) 354, 1405
Kzo9I GATC 4 cut(s) 354, 1038, 1081, 1405
LmnI GCTCC 2 cut(s) 1344, 1614
Lsp1109I GCAGC 1 cut(s) 618
LweI GCATC 1 cut(s) 1119
MaeI CTAG 1 cut(s) 456
MaeII ACGT 2 cut(s) 1139, 1279
MaeIII GTNAC 5 cut(s) 307, 706, 811, 941, 1529
MalI GATC 4 cut(s) 356, 1040, 1083, 1407
MboI GATC 4 cut(s) 354, 1038, 1081, 1405
MfeI CAATTG 1 cut(s) 1114
MhlI GDGCHC 2 cut(s) 205, 337
MluCI AATT 8 cut(s) 412, 552, 748, 834, 1114, 1120, 1188, 1838
MlyI GAGTC 1 cut(s) 1064
MmeI TCCRAC 2 cut(s) 810, 1047
MslI CAYNNNNRTG 1 cut(s) 699
MspR9I CCNGG 1 cut(s) 134
MunI CAATTG 1 cut(s) 1114
Mva1269I GAATGC 1 cut(s) 1393
MvaI CCWGG 1 cut(s) 134
MvnI CGCG 1 cut(s) 855
MwoI GCNNNNNNNGC 1 cut(s) 228
NdeI CATATG 1 cut(s) 1132
NdeII GATC 4 cut(s) 354, 1038, 1081, 1405
NlaIII CATG 4 cut(s) 638, 1267, 1437, 1764
NlaIV GGNNCC 1 cut(s) 1378
NmeAIII GCCGAG 2 cut(s) 306, 356
NmuCI GTSAC 3 cut(s) 307, 706, 811
NspI RCATGY 2 cut(s) 638, 1267
NspV TTCGAA 1 cut(s) 58
PaeI GCATGC 1 cut(s) 638
PctI GAATGC 1 cut(s) 1393
PfeI GAWTC 1 cut(s) 547
PkrI GCNGC 2 cut(s) 233, 633
PleI GAGTC 1 cut(s) 1063
PpsI GAGTC 1 cut(s) 1063
PpuMI RGGWCCY 2 cut(s) 136, 1238
PsiI TTATAA 1 cut(s) 621
Psp1406I AACGTT 1 cut(s) 1279
Psp5II RGGWCCY 2 cut(s) 136, 1238
Psp6I CCWGG 1 cut(s) 132
PspFI CCCAGC 1 cut(s) 170
PspGI CCWGG 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 1378
PspPI GGNCC 3 cut(s) 136, 156, 1238
PspPPI RGGWCCY 2 cut(s) 136, 1238
RseI CAYNNNNRTG 1 cut(s) 699
SatI GCNGC 2 cut(s) 232, 632
Sau3AI GATC 4 cut(s) 354, 1038, 1081, 1405
Sau96I GGNCC 3 cut(s) 136, 156, 1238
SchI GAGTC 1 cut(s) 1064
ScrFI CCNGG 1 cut(s) 134
SduI GDGCHC 2 cut(s) 205, 337
SfaNI GCATC 1 cut(s) 1119
SfuI TTCGAA 1 cut(s) 58
SinI GGWCC 2 cut(s) 136, 1238
SmiMI CAYNNNNRTG 1 cut(s) 699
SmlI CTYRAG 2 cut(s) 401, 1295
SmoI CTYRAG 2 cut(s) 401, 1295
SphI GCATGC 1 cut(s) 638
Sse9I AATT 8 cut(s) 412, 552, 748, 834, 1114, 1120, 1188, 1838
SsiI CCGC 2 cut(s) 232, 738
SspI AATATT 1 cut(s) 718
SspMI CTAG 1 cut(s) 456
StyD4I CCNGG 1 cut(s) 132
StyI CCWWGG 1 cut(s) 822
TaaI ACNGT 3 cut(s) 613, 947, 1798
TaiI ACGT 2 cut(s) 1142, 1282
TasI AATT 8 cut(s) 412, 552, 748, 834, 1114, 1120, 1188, 1838
TauI GCSGC 1 cut(s) 234
TfiI GAWTC 1 cut(s) 547
TscAI CASTG 1 cut(s) 1387
TseFI GTSAC 3 cut(s) 307, 706, 811
TseI GCWGC 1 cut(s) 631
Tsp45I GTSAC 3 cut(s) 307, 706, 811
TspDTI ATGAA 6 cut(s) 542, 695, 1112, 1217, 1523, 1533
TspRI CASTG 1 cut(s) 1387
VpaK11BI GGWCC 2 cut(s) 136, 1238
XapI RAATTY 4 cut(s) 748, 834, 1120, 1188
XceI RCATGY 2 cut(s) 638, 1267
XspI CTAG 1 cut(s) 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.