Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004806

Physical Location & Seq

Genomic Coordinates Reverse (-)

5407177 .. 5409376

Gene Structure 2200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1041700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGCCCACATCAATTGGACAACCCCCAGATGAAAACATCTTTGTCACCATCATTCGAGGTCTTGGCCGTGCCCACATGGTAAAACAAGTGATCAACGTGCTTGATTTGGTTTACAAGTATGACCAGAAACTTTCTTTGAAGGTATTCAATACAATACTTGATGTTCTTGTGAAGGAAGATATAGATATAGCTAGGGAGTTTTTTAGGATGAAGATGATAGAAAGTGGCATTGAAGGTGATGGTTATACTTTTGGTATCTTAATGAAAGGACTTTGCTTGACGAATCGAATTGGTGATGGTTTCAAGCTTTTGCAAGCAATGAAGACTCGAGGAATCACCCCAAATACTGTGGTTTATAACACGTTGCTTCATGTGCTTTGCAAGAACAAGAAAGTTGGGAGAGCGAGAAGCTTGATGAATGAGAAGGAAGCGCCGAATGATGTGACTTTTAATATTTTGATAACTGGCAATGGCCGTGTAATGGAGGCTCTCAAGCTTATTGAGAGAGTGGAGAGCAAGGGAGGACTGGTGGATGTGGTAGCTTATAACACCTTGGTTAAGGGTTTCTGTAGATTAGGCAAGGCGAAACTCAGTCTTCGCATTGTGGAGGAAATGGAGAAAAAGGGATGCCTTCCAAATGTTGATACTTACAATGTCTTGATCTCTTGTTTTTGCGAGTCTGGGATGTTGCTCTTAGGTTTCTGTGAGAAGGGCGCCACATTGAATGCGAAGAAGGTTTATGATCATATGATTACAGAAAACGGAGTTCCAAGTGCTATAATCTTTCATTGTCTAATCCATAGATTTTGCCAAGAAGACACTGTTCGCGAAGCTTTTGACCTAATGAATGAGATGATTGGTCATGGTTACTTTCCTCTTGCATCGACGTATAATCTTGTGACCAATGCGTTTTGTGACAAAGGGAAAGTAGGCAGTGCACTGAAACTTGTAGAGGACATGGCTGAGCGAGGTTGCTCACCCGATAGTGGAAGTTATAGTCCGTTGGTAGCTGTTCTTTGCCGGATGGGGGATTTTCAGAAAGCTTTGAGACTGGTTTTGCAGTTGGTAGAAAAGGGCATCATTTCAGATTACCTGACATGGAACTCGTTGCTTGTTTGTTCAAGTCAAGAGACTGTATGGTTGAAGGGAAAAAGTATAATCGATGTAAATAACAAGTTACACTATATTATTGAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

400

Amino Acids

44.56

Weight (kDa)

8.31

Isoelectric Point (pI)

28.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	102 - 155	7.9e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	110 - 141	2e-07	PPR repeat
PPR_2	PF13041	114 - 156	1.9e-09	PPR repeat family
PPR_3	PF13812	166 - 224	2.6e-14	Pentatricopeptide repeat domain
PPR_1	PF12854	174 - 206	3.7e-07	PPR repeat
PPR_2	PF13041	178 - 225	2e-16	PPR repeat family
PPR	PF01535	180 - 210	1.8e-06	PPR repeat
PPR_1	PF12854	208 - 230	2e-06	PPR repeat
PPR_long	PF17177	241 - 368	1.6e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	257 - 306	6.5e-08	PPR repeat family
PPR_2	PF13041	295 - 341	2.3e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17525
fragaria_vesca	FvH4_7g03710 FvH4_7g03710 FvH4_7g03710
malus_domestica	MD05G1037900.v1.1 MD10G1041700.v1.1
prunus_persica	Prupe.2G066000_v2.0.a1
pyrus_communis	pycom05g02810 pycom10g02880
rosa_chinensis	RchiOBHm_Chr1g0326501 RchiOBHm_Chr1g0326531 RchiOBHm_Chr1g0326571 RchiOBHm_Chr1g0326581
rosa_laevigata	RLG00000005572 RLG00000006170 RLG00000023929 RLG00000030068
rosa_multiflora	Rmu_sc0001355.1_g000018
rosa_roxburghii	Rroxscaffold_2G00146300 Rroxscaffold_4G00323710 Rroxscaffold_4G00327680
rosa_rugosa	Rorug01G0061000
rosa_samantha	Rh1BG062600 Rh1BG062800 Rh1CG075400 Rh1DG082100 Rh1DG082200 Rh1DG082400 Rh7BG001800 Rh7DG001700
rosa_wichuraiana	Rw1G006130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	357, 546
AccB1I	GGYRCC	1 cut(s)	713
AccII	CGCG	1 cut(s)	828
AcoI	YGGCCR	2 cut(s)	64, 472
AcyI	GRCGYC	1 cut(s)	714
AfiI	CCNNNNNNNGG	3 cut(s)	481, 986, 1027
AflIII	ACRYGT	1 cut(s)	360
AgsI	TTSAA	7 cut(s)	139, 148, 233, 304, 724, 1122, 1144
AluBI	AGCT	8 cut(s)	191, 307, 411, 496, 542, 833, 1010, 1043
AluI	AGCT	8 cut(s)	191, 307, 411, 496, 542, 833, 1010, 1043
Alw21I	GWGCWC	1 cut(s)	940
Alw26I	GTCTC	2 cut(s)	1042, 1124
Alw44I	GTGCAC	1 cut(s)	936
Ama87I	CYCGRG	1 cut(s)	327
AoxI	GGCC	2 cut(s)	64, 472
ApaLI	GTGCAC	1 cut(s)	936
Asp700I	GAANNNNTTC	1 cut(s)	143
AspLEI	GCGC	2 cut(s)	433, 716
AsuHPI	GGTGA	5 cut(s)	37, 248, 305, 328, 969
AvaI	CYCGRG	1 cut(s)	327
BaeGI	GKGCMC	2 cut(s)	73, 940
BanI	GGYRCC	1 cut(s)	713
BbsI	GAAGAC	3 cut(s)	329, 587, 822
Bbv12I	GWGCWC	1 cut(s)	940
BccI	CCATC	4 cut(s)	56, 233, 290, 1018
BceAI	ACGGC	2 cut(s)	51, 459
BclI	TGATCA	2 cut(s)	90, 742
BcoDI	GTCTC	2 cut(s)	1042, 1124
BfaI	CTAG	1 cut(s)	192
BfmI	CTRYAG	1 cut(s)	568
BfoI	RGCGCY	2 cut(s)	434, 717
BlpI	GCTNAGC	1 cut(s)	963
BmeT110I	CYCGRG	1 cut(s)	327
BmiI	GGNNCC	1 cut(s)	715
BmsI	GCATC	3 cut(s)	617, 890, 1086
BpiI	GAAGAC	3 cut(s)	329, 587, 822
Bpu1102I	GCTNAGC	1 cut(s)	963
BpuEI	CTTGAG	1 cut(s)	476
Bsa29I	ATCGAT	1 cut(s)	1161
BsaHI	GRCGYC	1 cut(s)	714
BsaJI	CCNNGG	1 cut(s)	552
BsaXI	ACNNNNNCTCC	2 cut(s)	513, 543
Bsc4I	CCNNNNNNNGG	3 cut(s)	481, 986, 1027
Bse1I	ACTGG	3 cut(s)	469, 531, 1056
Bse3DI	GCAATG	2 cut(s)	324, 475
BseCI	ATCGAT	1 cut(s)	1161
BseDI	CCNNGG	1 cut(s)	552
BseGI	GGATG	5 cut(s)	213, 538, 632, 690, 1029
BseLI	CCNNNNNNNGG	3 cut(s)	481, 986, 1027
BseMI	GCAATG	2 cut(s)	324, 475
BseMII	CTCAG	2 cut(s)	604, 954
BseNI	ACTGG	3 cut(s)	469, 531, 1056
BseSI	GKGCMC	2 cut(s)	73, 940
Bsh1236I	CGCG	1 cut(s)	828
BshFI	GGCC	2 cut(s)	66, 474
BshNI	GGYRCC	1 cut(s)	713
BshVI	ATCGAT	1 cut(s)	1161
BsiHKAI	GWGCWC	1 cut(s)	940
BsiHKCI	CYCGRG	1 cut(s)	327
BsiSI	CCGG	1 cut(s)	1021
BslI	CCNNNNNNNGG	3 cut(s)	481, 986, 1027
BsmAI	GTCTC	2 cut(s)	1042, 1124
BsmI	GAATGC	1 cut(s)	730
BsnI	GGCC	2 cut(s)	66, 474
BsoBI	CYCGRG	1 cut(s)	327
Bsp1286I	GDGCHC	2 cut(s)	73, 940
Bsp143I	GATC	3 cut(s)	90, 660, 742
Bsp1720I	GCTNAGC	1 cut(s)	963
Bsp68I	TCGCGA	1 cut(s)	828
BspANI	GGCC	2 cut(s)	66, 474
BspCNI	CTCAG	2 cut(s)	603, 955
BspDI	ATCGAT	1 cut(s)	1161
BspFNI	CGCG	1 cut(s)	828
BspLI	GGNNCC	1 cut(s)	715
BspT107I	GGYRCC	1 cut(s)	713
BsrDI	GCAATG	2 cut(s)	324, 475
BsrI	ACTGG	3 cut(s)	469, 531, 1056
BssECI	CCNNGG	1 cut(s)	552
BssMI	GATC	3 cut(s)	90, 660, 742
BssNI	GRCGYC	1 cut(s)	714
BssT1I	CCWWGG	1 cut(s)	552
Bst4CI	ACNGT	3 cut(s)	349, 823, 1135
BstACI	GRCGYC	1 cut(s)	714
BstC8I	GCNNGC	1 cut(s)	315
BstDEI	CTNAG	3 cut(s)	590, 694, 963
BstF5I	GGATG	5 cut(s)	213, 538, 632, 690, 1029
BstFNI	CGCG	1 cut(s)	828
BstH2I	RGCGCY	2 cut(s)	434, 717
BstHHI	GCGC	2 cut(s)	433, 716
BstKTI	GATC	3 cut(s)	93, 663, 745
BstMAI	GTCTC	2 cut(s)	1042, 1124
BstMBI	GATC	3 cut(s)	90, 660, 742
BstMWI	GCNNNNNNNGC	1 cut(s)	373
BstSFI	CTRYAG	1 cut(s)	568
BstSLI	GKGCMC	2 cut(s)	73, 940
BstUI	CGCG	1 cut(s)	828
BstV2I	GAAGAC	3 cut(s)	329, 587, 822
Bsu15I	ATCGAT	1 cut(s)	1161
BsuRI	GGCC	2 cut(s)	66, 474
BsuTUI	ATCGAT	1 cut(s)	1161
BtsCI	GGATG	5 cut(s)	213, 538, 632, 690, 1029
BtsI	GCAGTG	1 cut(s)	940
BtsIMutI	CAGTG	3 cut(s)	819, 938, 940
BtuMI	TCGCGA	1 cut(s)	828
Cac8I	GCNNGC	1 cut(s)	315
CfoI	GCGC	2 cut(s)	433, 716
ClaI	ATCGAT	1 cut(s)	1161
CspCI	CAANNNNNGTGG	3 cut(s)	30, 330, 365
CviAII	CATG	5 cut(s)	76, 371, 863, 958, 1098
DdeI	CTNAG	3 cut(s)	590, 694, 963
DinI	GGCGCC	1 cut(s)	715
DpnI	GATC	3 cut(s)	92, 662, 744
DpnII	GATC	3 cut(s)	90, 660, 742
EaeI	YGGCCR	2 cut(s)	64, 472
Eco130I	CCWWGG	1 cut(s)	552
Eco88I	CYCGRG	1 cut(s)	327
EcoT14I	CCWWGG	1 cut(s)	552
EgeI	GGCGCC	1 cut(s)	715
EheI	GGCGCC	1 cut(s)	715
ErhI	CCWWGG	1 cut(s)	552
FaeI	CATG	5 cut(s)	79, 374, 866, 961, 1101
FatI	CATG	5 cut(s)	75, 370, 862, 957, 1097
FauNDI	CATATG	1 cut(s)	747
FbaI	TGATCA	2 cut(s)	90, 742
FokI	GGATG	5 cut(s)	220, 545, 639, 697, 1036
FspBI	CTAG	1 cut(s)	192
GlaI	GCGC	2 cut(s)	432, 715
HaeII	RGCGCY	2 cut(s)	434, 717
HaeIII	GGCC	2 cut(s)	66, 474
HapII	CCGG	1 cut(s)	1021
HhaI	GCGC	2 cut(s)	433, 716
Hin1I	GRCGYC	1 cut(s)	714
Hin1II	CATG	5 cut(s)	79, 374, 866, 961, 1101
Hin6I	GCGC	2 cut(s)	431, 714
HinP1I	GCGC	2 cut(s)	431, 714
HindIII	AAGCTT	5 cut(s)	305, 409, 494, 831, 1041
HinfI	GANTC	4 cut(s)	283, 325, 333, 677
HpaII	CCGG	1 cut(s)	1021
HphI	GGTGA	5 cut(s)	37, 248, 305, 328, 969
Hpy166II	GTNNAC	2 cut(s)	112, 938
Hpy188I	TCNGA	2 cut(s)	1038, 1087
Hpy188III	TCNNGA	3 cut(s)	658, 827, 1127
Hpy8I	GTNNAC	2 cut(s)	112, 938
Hpy99I	CGWCG	1 cut(s)	889
HpyAV	CCTTC	8 cut(s)	133, 166, 227, 418, 641, 703, 727, 1138
HpyCH4III	ACNGT	3 cut(s)	349, 823, 1135
HpyCH4IV	ACGT	3 cut(s)	96, 362, 887
HpyCH4V	TGCA	5 cut(s)	313, 381, 881, 938, 1060
HpyF10VI	GCNNNNNNNGC	1 cut(s)	373
HpyF3I	CTNAG	3 cut(s)	590, 694, 963
HpySE526I	ACGT	3 cut(s)	96, 362, 887
Hsp92I	GRCGYC	1 cut(s)	714
Hsp92II	CATG	5 cut(s)	79, 374, 866, 961, 1101
HspAI	GCGC	2 cut(s)	431, 714
KasI	GGCGCC	1 cut(s)	713
Ksp22I	TGATCA	2 cut(s)	90, 742
Kzo9I	GATC	3 cut(s)	90, 660, 742
LpnPI	CCDG	8 cut(s)	39, 137, 450, 512, 666, 1034, 1037, 1106
LweI	GCATC	3 cut(s)	617, 890, 1086
MaeI	CTAG	1 cut(s)	192
MaeII	ACGT	3 cut(s)	96, 362, 887
MaeIII	GTNAC	6 cut(s)	43, 442, 866, 898, 914, 1176
MalI	GATC	3 cut(s)	92, 662, 744
MboI	GATC	3 cut(s)	90, 660, 742
MboII	GAAGA	6 cut(s)	188, 223, 334, 587, 742, 827
MfeI	CAATTG	1 cut(s)	12
MhlI	GDGCHC	2 cut(s)	73, 940
MluCI	AATT	3 cut(s)	12, 288, 1195
Mly113I	GGCGCC	1 cut(s)	714
MlyI	GAGTC	2 cut(s)	319, 686
MnlI	CCTC	8 cut(s)	50, 323, 478, 515, 601, 885, 946, 962
MroXI	GAANNNNTTC	1 cut(s)	143
MseI	TTAA	4 cut(s)	260, 450, 558, 1198
MspI	CCGG	1 cut(s)	1021
MunI	CAATTG	1 cut(s)	12
Mva1269I	GAATGC	1 cut(s)	730
MvnI	CGCG	1 cut(s)	828
MwoI	GCNNNNNNNGC	1 cut(s)	373
NarI	GGCGCC	1 cut(s)	714
NdeI	CATATG	1 cut(s)	747
NdeII	GATC	3 cut(s)	90, 660, 742
NlaIII	CATG	5 cut(s)	79, 374, 866, 961, 1101
NlaIV	GGNNCC	1 cut(s)	715
NmuCI	GTSAC	4 cut(s)	43, 442, 898, 914
NruI	TCGCGA	1 cut(s)	828
PaeR7I	CTCGAG	1 cut(s)	327
PctI	GAATGC	1 cut(s)	730
PdmI	GAANNNNTTC	1 cut(s)	143
PfeI	GAWTC	2 cut(s)	283, 333
PleI	GAGTC	2 cut(s)	319, 685
PluTI	GGCGCC	1 cut(s)	717
PpsI	GAGTC	2 cut(s)	319, 685
PsiI	TTATAA	2 cut(s)	357, 546
PspN4I	GGNNCC	1 cut(s)	715
PspXI	VCTCGAGB	1 cut(s)	327
RruI	TCGCGA	1 cut(s)	828
SaqAI	TTAA	4 cut(s)	260, 450, 558, 1198
Sau3AI	GATC	3 cut(s)	90, 660, 742
SchI	GAGTC	2 cut(s)	319, 686
SduI	GDGCHC	2 cut(s)	73, 940
SfaNI	GCATC	3 cut(s)	617, 890, 1086
SfcI	CTRYAG	1 cut(s)	568
SfoI	GGCGCC	1 cut(s)	715
Sfr274I	CTCGAG	1 cut(s)	327
SlaI	CTCGAG	1 cut(s)	327
SmlI	CTYRAG	2 cut(s)	327, 491
SmoI	CTYRAG	2 cut(s)	327, 491
Sse9I	AATT	3 cut(s)	12, 288, 1195
SspDI	GGCGCC	1 cut(s)	713
SspI	AATATT	1 cut(s)	454
SspMI	CTAG	1 cut(s)	192
StyI	CCWWGG	1 cut(s)	552
TaaI	ACNGT	3 cut(s)	349, 823, 1135
TaiI	ACGT	3 cut(s)	99, 365, 890
TaqI	TCGA	5 cut(s)	55, 286, 328, 884, 1161
TasI	AATT	3 cut(s)	12, 288, 1195
TfiI	GAWTC	2 cut(s)	283, 333
Tru1I	TTAA	4 cut(s)	260, 450, 558, 1198
Tru9I	TTAA	4 cut(s)	260, 450, 558, 1198
TscAI	CASTG	3 cut(s)	826, 940, 945
TseFI	GTSAC	4 cut(s)	43, 442, 898, 914
Tsp45I	GTSAC	4 cut(s)	43, 442, 898, 914
TspDTI	ATGAA	8 cut(s)	45, 224, 278, 335, 359, 431, 776, 860
TspGWI	ACGGA	2 cut(s)	777, 990
TspRI	CASTG	3 cut(s)	826, 940, 945
VneI	GTGCAC	1 cut(s)	936
XhoI	CTCGAG	1 cut(s)	327
XmnI	GAANNNNTTC	1 cut(s)	143
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.