Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G17525 |
| fragaria_vesca | FvH4_7g03710 FvH4_7g03710 FvH4_7g03710 |
| malus_domestica | MD05G1037900.v1.1 MD10G1041700.v1.1 |
| prunus_persica | Prupe.2G066000_v2.0.a1 |
| pyrus_communis | pycom05g02810 pycom10g02880 |
| rosa_chinensis | RchiOBHm_Chr1g0326501 RchiOBHm_Chr1g0326531 RchiOBHm_Chr1g0326571 RchiOBHm_Chr1g0326581 |
| rosa_laevigata | RLG00000005572 RLG00000006170 RLG00000023929 RLG00000030068 |
| rosa_multiflora | Rmu_sc0001355.1_g000018 |
| rosa_roxburghii | Rroxscaffold_2G00146300 Rroxscaffold_4G00323710 Rroxscaffold_4G00327680 |
| rosa_rugosa | Rorug01G0061000 |
| rosa_samantha | Rh1BG062600 Rh1BG062800 Rh1CG075400 Rh1DG082100 Rh1DG082200 Rh1DG082400 Rh7BG001800 Rh7DG001700 |
| rosa_wichuraiana | Rw1G006130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 369 |
| AciI | CCGC | 1 cut(s) | 232 |
| AcoI | YGGCCR | 1 cut(s) | 328 |
| AdeI | CACNNNGTG | 1 cut(s) | 253 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 153 |
| AgsI | TTSAA | 1 cut(s) | 412 |
| AjnI | CCWGG | 1 cut(s) | 132 |
| AluBI | AGCT | 3 cut(s) | 25, 174, 217 |
| AluI | AGCT | 3 cut(s) | 25, 174, 217 |
| Alw21I | GWGCWC | 1 cut(s) | 258 |
| AoxI | GGCC | 4 cut(s) | 156, 280, 322, 328 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 287, 319 |
| AspS9I | GGNCC | 2 cut(s) | 136, 156 |
| AsuHPI | GGTGA | 3 cut(s) | 37, 169, 355 |
| AsuII | TTCGAA | 1 cut(s) | 58 |
| AvaII | GGWCC | 1 cut(s) | 136 |
| BanII | GRGCYC | 2 cut(s) | 205, 337 |
| Bbv12I | GWGCWC | 1 cut(s) | 258 |
| BccI | CCATC | 3 cut(s) | 57, 91, 472 |
| BceAI | ACGGC | 1 cut(s) | 337 |
| BciT130I | CCWGG | 1 cut(s) | 134 |
| BclI | TGATCA | 1 cut(s) | 354 |
| BfaI | CTAG | 1 cut(s) | 456 |
| BfuAI | ACCTGC | 1 cut(s) | 369 |
| BisI | GCNGC | 1 cut(s) | 232 |
| BlsI | GCNGC | 1 cut(s) | 233 |
| Bme1390I | CCNGG | 1 cut(s) | 134 |
| Bme18I | GGWCC | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 2 cut(s) | 136, 156 |
| BmrFI | CCNGG | 1 cut(s) | 134 |
| Bpu14I | TTCGAA | 1 cut(s) | 58 |
| BpuEI | CTTGAG | 1 cut(s) | 386 |
| BsaJI | CCNNGG | 2 cut(s) | 132, 325 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 153 |
| Bse3DI | GCAATG | 2 cut(s) | 72, 240 |
| BseBI | CCWGG | 1 cut(s) | 134 |
| BseDI | CCNNGG | 2 cut(s) | 132, 325 |
| BseGI | GGATG | 2 cut(s) | 68, 207 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 153 |
| BseMI | GCAATG | 2 cut(s) | 72, 240 |
| BseX3I | CGGCCG | 1 cut(s) | 328 |
| BseYI | CCCAGC | 1 cut(s) | 170 |
| BsgI | GTGCAG | 1 cut(s) | 205 |
| Bsh1285I | CGRYCG | 1 cut(s) | 331 |
| BshFI | GGCC | 4 cut(s) | 158, 282, 324, 330 |
| BsiEI | CGRYCG | 1 cut(s) | 331 |
| BsiHKAI | GWGCWC | 1 cut(s) | 258 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 153 |
| BsnI | GGCC | 4 cut(s) | 158, 282, 324, 330 |
| Bsp119I | TTCGAA | 1 cut(s) | 58 |
| Bsp1286I | GDGCHC | 3 cut(s) | 205, 258, 337 |
| Bsp143I | GATC | 1 cut(s) | 354 |
| BspACI | CCGC | 1 cut(s) | 232 |
| BspANI | GGCC | 4 cut(s) | 158, 282, 324, 330 |
| BspMI | ACCTGC | 1 cut(s) | 369 |
| BspT104I | TTCGAA | 1 cut(s) | 58 |
| BsrDI | GCAATG | 2 cut(s) | 72, 240 |
| BssECI | CCNNGG | 2 cut(s) | 132, 325 |
| BssMI | GATC | 1 cut(s) | 354 |
| Bst2UI | CCWGG | 1 cut(s) | 134 |
| Bst6I | CTCTTC | 1 cut(s) | 43 |
| BstBI | TTCGAA | 1 cut(s) | 58 |
| BstF5I | GGATG | 2 cut(s) | 68, 207 |
| BstKTI | GATC | 1 cut(s) | 357 |
| BstMBI | GATC | 1 cut(s) | 354 |
| BstMCI | CGRYCG | 1 cut(s) | 331 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 228 |
| BstNI | CCWGG | 1 cut(s) | 134 |
| BstSCI | CCNGG | 1 cut(s) | 132 |
| BstZI | CGGCCG | 1 cut(s) | 328 |
| BsuRI | GGCC | 4 cut(s) | 158, 282, 324, 330 |
| BtsCI | GGATG | 2 cut(s) | 68, 207 |
| BveI | ACCTGC | 1 cut(s) | 369 |
| Cfr13I | GGNCC | 2 cut(s) | 136, 156 |
| DpnI | GATC | 1 cut(s) | 356 |
| DpnII | GATC | 1 cut(s) | 354 |
| DraIII | CACNNNGTG | 1 cut(s) | 253 |
| EaeI | YGGCCR | 1 cut(s) | 328 |
| EagI | CGGCCG | 1 cut(s) | 328 |
| Eam1104I | CTCTTC | 1 cut(s) | 43 |
| EarI | CTCTTC | 1 cut(s) | 43 |
| EclXI | CGGCCG | 1 cut(s) | 328 |
| Eco24I | GRGCYC | 2 cut(s) | 205, 337 |
| Eco47I | GGWCC | 1 cut(s) | 136 |
| Eco52I | CGGCCG | 1 cut(s) | 328 |
| EcoO109I | RGGNCCY | 1 cut(s) | 136 |
| EcoRII | CCWGG | 1 cut(s) | 132 |
| EcoT38I | GRGCYC | 2 cut(s) | 205, 337 |
| FaiI | YATR | 4 cut(s) | 98, 384, 446, 468 |
| FbaI | TGATCA | 1 cut(s) | 354 |
| Fnu4HI | GCNGC | 1 cut(s) | 232 |
| FokI | GGATG | 2 cut(s) | 55, 194 |
| FriOI | GRGCYC | 2 cut(s) | 205, 337 |
| Fsp4HI | GCNGC | 1 cut(s) | 232 |
| FspBI | CTAG | 1 cut(s) | 456 |
| GluI | GCNGC | 1 cut(s) | 232 |
| GsaI | CCCAGC | 1 cut(s) | 174 |
| HaeIII | GGCC | 4 cut(s) | 158, 282, 324, 330 |
| HindIII | AAGCTT | 1 cut(s) | 23 |
| HinfI | GANTC | 1 cut(s) | 492 |
| HphI | GGTGA | 3 cut(s) | 37, 169, 355 |
| Hpy166II | GTNNAC | 1 cut(s) | 192 |
| Hpy188III | TCNNGA | 1 cut(s) | 403 |
| Hpy8I | GTNNAC | 1 cut(s) | 192 |
| Hpy99I | CGWCG | 1 cut(s) | 263 |
| HpyAV | CCTTC | 3 cut(s) | 157, 405, 430 |
| HpyCH4V | TGCA | 1 cut(s) | 222 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 228 |
| Ksp22I | TGATCA | 1 cut(s) | 354 |
| Kzo9I | GATC | 1 cut(s) | 354 |
| LpnPI | CCDG | 6 cut(s) | 119, 146, 184, 303, 364, 401 |
| MaeI | CTAG | 1 cut(s) | 456 |
| MaeIII | GTNAC | 1 cut(s) | 307 |
| MalI | GATC | 1 cut(s) | 356 |
| MboI | GATC | 1 cut(s) | 354 |
| MboII | GAAGA | 4 cut(s) | 30, 44, 47, 98 |
| MhlI | GDGCHC | 3 cut(s) | 205, 258, 337 |
| MluCI | AATT | 1 cut(s) | 412 |
| MlyI | GAGTC | 1 cut(s) | 501 |
| MnlI | CCTC | 7 cut(s) | 28, 149, 169, 215, 293, 335, 433 |
| MspR9I | CCNGG | 1 cut(s) | 134 |
| MvaI | CCWGG | 1 cut(s) | 134 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 228 |
| NdeII | GATC | 1 cut(s) | 354 |
| NmeAIII | GCCGAG | 2 cut(s) | 306, 356 |
| NmuCI | GTSAC | 1 cut(s) | 307 |
| NspV | TTCGAA | 1 cut(s) | 58 |
| PkrI | GCNGC | 1 cut(s) | 233 |
| PleI | GAGTC | 1 cut(s) | 500 |
| PpsI | GAGTC | 1 cut(s) | 500 |
| PpuMI | RGGWCCY | 1 cut(s) | 136 |
| Psp5II | RGGWCCY | 1 cut(s) | 136 |
| Psp6I | CCWGG | 1 cut(s) | 132 |
| PspFI | CCCAGC | 1 cut(s) | 170 |
| PspGI | CCWGG | 1 cut(s) | 132 |
| PspPI | GGNCC | 2 cut(s) | 136, 156 |
| PspPPI | RGGWCCY | 1 cut(s) | 136 |
| SatI | GCNGC | 1 cut(s) | 232 |
| Sau3AI | GATC | 1 cut(s) | 354 |
| Sau96I | GGNCC | 2 cut(s) | 136, 156 |
| SchI | GAGTC | 1 cut(s) | 501 |
| ScrFI | CCNGG | 1 cut(s) | 134 |
| SduI | GDGCHC | 3 cut(s) | 205, 258, 337 |
| SetI | ASST | 8 cut(s) | 27, 138, 149, 176, 219, 363, 383, 397 |
| SfuI | TTCGAA | 1 cut(s) | 58 |
| SinI | GGWCC | 1 cut(s) | 136 |
| SmlI | CTYRAG | 1 cut(s) | 401 |
| SmoI | CTYRAG | 1 cut(s) | 401 |
| Sse9I | AATT | 1 cut(s) | 412 |
| SsiI | CCGC | 1 cut(s) | 232 |
| SspMI | CTAG | 1 cut(s) | 456 |
| StyD4I | CCNGG | 1 cut(s) | 132 |
| TaqI | TCGA | 7 cut(s) | 58, 114, 141, 237, 258, 416, 423 |
| TasI | AATT | 1 cut(s) | 412 |
| TauI | GCSGC | 1 cut(s) | 234 |
| TseFI | GTSAC | 1 cut(s) | 307 |
| Tsp45I | GTSAC | 1 cut(s) | 307 |
| VpaK11BI | GGWCC | 1 cut(s) | 136 |
| XspI | CTAG | 1 cut(s) | 456 |