Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004806

Physical Location & Seq

Genomic Coordinates Forward (+)

177289 .. 177573

Gene Structure 285 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG001700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGCCTCACTCAATTGGCCTACCCCTAGATGAAAACATTTTCTTCACACTCATTCACGGTCTTGGCCGTGATCACTTGGTGAAGCAAATGGTTAAGGTGCTTGACTTGGTTGCCAGGTACAACCAAAAACCTTCTCTCAAGATAGTCAATACGATACTTGATGTCCTTGTAAAGGAAGACAGAGATATAGCTAGGGAGTTTTATAGGAAGAAGATGATGGCAAGTGGCGTCAAGGGTGATGATTATACTTCCGGTATCTTGATGAAAAAGTTTTTGCTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

94

Amino Acids

10.8

Weight (kDa)

9.26

Isoelectric Point (pI)

26.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17525
fragaria_vesca	FvH4_7g03710 FvH4_7g03710 FvH4_7g03710
malus_domestica	MD05G1037900.v1.1 MD10G1041700.v1.1
prunus_persica	Prupe.2G066000_v2.0.a1
pyrus_communis	pycom05g02810 pycom10g02880
rosa_chinensis	RchiOBHm_Chr1g0326501 RchiOBHm_Chr1g0326531 RchiOBHm_Chr1g0326571 RchiOBHm_Chr1g0326581
rosa_laevigata	RLG00000005572 RLG00000006170 RLG00000023929 RLG00000030068
rosa_multiflora	Rmu_sc0001355.1_g000018
rosa_roxburghii	Rroxscaffold_2G00146300 Rroxscaffold_4G00323710 Rroxscaffold_4G00327680
rosa_rugosa	Rorug01G0061000
rosa_samantha	Rh1BG062600 Rh1BG062800 Rh1CG075400 Rh1DG082100 Rh1DG082200 Rh1DG082400 Rh7BG001800 Rh7DG001700
rosa_wichuraiana	Rw1G006130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	64
AcyI	GRCGYC	1 cut(s)	228
AdeI	CACNNNGTG	1 cut(s)	79
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	113
AluBI	AGCT	1 cut(s)	191
AluI	AGCT	1 cut(s)	191
AoxI	GGCC	2 cut(s)	16, 64
AsuHPI	GGTGA	2 cut(s)	91, 248
BbsI	GAAGAC	1 cut(s)	183
BccI	CCATC	1 cut(s)	211
BceAI	ACGGC	1 cut(s)	51
BciT130I	CCWGG	1 cut(s)	115
BclI	TGATCA	1 cut(s)	70
BfaI	CTAG	2 cut(s)	26, 192
Bme1390I	CCNGG	1 cut(s)	115
BmrFI	CCNGG	1 cut(s)	115
BpiI	GAAGAC	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	122
BsaHI	GRCGYC	1 cut(s)	228
BsaWI	WCCGGW	1 cut(s)	251
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
BseBI	CCWGG	1 cut(s)	115
BseLI	CCNNNNNNNGG	1 cut(s)	172
BshFI	GGCC	2 cut(s)	18, 66
BsiSI	CCGG	1 cut(s)	252
BslI	CCNNNNNNNGG	1 cut(s)	172
BsnI	GGCC	2 cut(s)	18, 66
Bsp143I	GATC	1 cut(s)	70
BspANI	GGCC	2 cut(s)	18, 66
BssMI	GATC	1 cut(s)	70
BssNI	GRCGYC	1 cut(s)	228
Bst2UI	CCWGG	1 cut(s)	115
Bst4CI	ACNGT	1 cut(s)	59
BstACI	GRCGYC	1 cut(s)	228
BstENI	CCTNNNNNAGG	1 cut(s)	170
BstKTI	GATC	1 cut(s)	73
BstMBI	GATC	1 cut(s)	70
BstNI	CCWGG	1 cut(s)	115
BstSCI	CCNGG	1 cut(s)	113
BstV2I	GAAGAC	1 cut(s)	183
BsuRI	GGCC	2 cut(s)	18, 66
CseI	GACGC	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	118
CviJI	RGCY	3 cut(s)	18, 66, 191
CviKI_1	RGCY	3 cut(s)	18, 66, 191
CviQI	GTAC	1 cut(s)	118
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
DraIII	CACNNNGTG	1 cut(s)	79
EaeI	YGGCCR	1 cut(s)	64
EcoNI	CCTNNNNNAGG	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	113
FaiI	YATR	3 cut(s)	188, 204, 246
FbaI	TGATCA	1 cut(s)	70
FspBI	CTAG	2 cut(s)	26, 192
HaeIII	GGCC	2 cut(s)	18, 66
HapII	CCGG	1 cut(s)	252
HgaI	GACGC	1 cut(s)	217
Hin1I	GRCGYC	1 cut(s)	228
HpaII	CCGG	1 cut(s)	252
HphI	GGTGA	2 cut(s)	91, 248
Hpy188III	TCNNGA	2 cut(s)	139, 259
HpyAV	CCTTC	1 cut(s)	141
HpyCH4III	ACNGT	1 cut(s)	59
Hsp92I	GRCGYC	1 cut(s)	228
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	70
LpnPI	CCDG	3 cut(s)	100, 127, 265
MaeI	CTAG	2 cut(s)	26, 192
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	4 cut(s)	34, 188, 220, 223
MfeI	CAATTG	1 cut(s)	12
MluCI	AATT	1 cut(s)	12
MnlI	CCTC	1 cut(s)	15
MseI	TTAA	1 cut(s)	93
MspI	CCGG	1 cut(s)	252
MspR9I	CCNGG	1 cut(s)	115
MunI	CAATTG	1 cut(s)	12
MvaI	CCWGG	1 cut(s)	115
NdeII	GATC	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	113
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
SaqAI	TTAA	1 cut(s)	93
Sau3AI	GATC	1 cut(s)	70
ScrFI	CCNGG	1 cut(s)	115
SetI	ASST	4 cut(s)	99, 119, 133, 193
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	1 cut(s)	12
SspMI	CTAG	2 cut(s)	26, 192
StyD4I	CCNGG	1 cut(s)	113
TaaI	ACNGT	1 cut(s)	59
TasI	AATT	1 cut(s)	12
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TspDTI	ATGAA	2 cut(s)	45, 278
XagI	CCTNNNNNAGG	1 cut(s)	170
XspI	CTAG	2 cut(s)	26, 192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.