Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004806

Physical Location & Seq

Genomic Coordinates Forward (+)

15087284 .. 15088975

Gene Structure 1692 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55619

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGCTAATCTCCAATCCCTCAAAGCTTCCCCCAATCTCTTCTCTCACCCATCTTCTTCGAACTCTCTCATCCATTGCTGTTCCATCTCACAACCACATATCACATCTTCTACTCGAACAAAAATCAGCCACCCAGGTCCTCGACACCTTCCAATGGGCCTCCAAACTCCCCAGCTTCACCCACTCCCCGTCCACTCACCGAGCCCTCATCCACAAGCTCTGCACCTTTCGCCGCTTCGACATTGCCCACCAAGTGCTCGACGAAATGCCCCACTCAATCGGCCTCCCCCCAGATGACCACATTTTCGTCACACTCATTCACGGCCTCGGCCGAGCCCATTTGGTGAAGCAAGTGATCAAGGTGCTTGACTTGGTTCGCAGGTATAACCAGAAACCTTCTCTCAAGATATTCAATTCGATTCTTGATGTTCTTGTGAAGGAGGATATAGATATAGCTAGGGAGTTTTATAGGAAGAAGATGATGGCAAGTGGCGTCAAGGGTGATGATTATACTTTTGGTATCTTGATGAAAGGTCTTTGTTTGACGAATCGGATTGGTGATGGGTTTAAGCTTTTGCAGGCTATTAAGTCGAGAGGAGTTGCGCCGAATACTGTGGTTTATAACACATTGCTGCATGCACTTTGCAGGAATGGGAAAGTTGGGAGAGCCAGAAGCTTGATGAATGAGATGGAAGACCCCAATGATGTGACTTTTAATATTTTGATATCTGGTTATTGTGGAGAAGAGAATTTGGTGCAAGCGCTTGTTATGTTAGACAAGTGCTTTGGTCTGGGGTATGTGCCTGATGTTGTCACGACAACCAAGGTGTTGGAAATTCTGTGCAATGATGGTCGGGTAATGGAGGCTGTCAAGGTTATAGAGAGAGTGGAGAGCAATGGAGGGTTGGTTGACGTTGTGGCATATAATACTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

311

Amino Acids

34.69

Weight (kDa)

8.66

Isoelectric Point (pI)

36.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	190 - 246	2.4e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	198 - 231	9.3e-12	PPR repeat
PPR_2	PF13041	202 - 246	7.2e-15	PPR repeat family
PPR	PF01535	205 - 231	1.1e-06	PPR repeat
PPR_1	PF12854	233 - 260	1.1e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17525
fragaria_vesca	FvH4_7g03710 FvH4_7g03710 FvH4_7g03710
malus_domestica	MD05G1037900.v1.1 MD10G1041700.v1.1
prunus_persica	Prupe.2G066000_v2.0.a1
pyrus_communis	pycom05g02810 pycom10g02880
rosa_chinensis	RchiOBHm_Chr1g0326501 RchiOBHm_Chr1g0326531 RchiOBHm_Chr1g0326571 RchiOBHm_Chr1g0326581
rosa_laevigata	RLG00000005572 RLG00000006170 RLG00000023929 RLG00000030068
rosa_multiflora	Rmu_sc0001355.1_g000018
rosa_roxburghii	Rroxscaffold_2G00146300 Rroxscaffold_4G00323710 Rroxscaffold_4G00327680
rosa_rugosa	Rorug01G0061000
rosa_samantha	Rh1BG062600 Rh1BG062800 Rh1CG075400 Rh1DG082100 Rh1DG082200 Rh1DG082400 Rh7BG001800 Rh7DG001700
rosa_wichuraiana	Rw1G006130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	621
Acc36I	ACCTGC	1 cut(s)	369
AciI	CCGC	1 cut(s)	232
AcoI	YGGCCR	1 cut(s)	328
AcsI	RAATTY	2 cut(s)	748, 834
AcyI	GRCGYC	1 cut(s)	492
AdeI	CACNNNGTG	1 cut(s)	253
AfeI	AGCGCT	1 cut(s)	762
AfiI	CCNNNNNNNGG	1 cut(s)	153
AgsI	TTSAA	1 cut(s)	412
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	6 cut(s)	25, 174, 217, 455, 571, 675
AluI	AGCT	6 cut(s)	25, 174, 217, 455, 571, 675
Alw21I	GWGCWC	1 cut(s)	258
Aor51HI	AGCGCT	1 cut(s)	762
AoxI	GGCC	4 cut(s)	156, 280, 322, 328
ApeKI	GCWGC	1 cut(s)	631
ApoI	RAATTY	2 cut(s)	748, 834
ArsI	GACNNNNNNTTYG	4 cut(s)	287, 319, 767, 799
AspLEI	GCGC	2 cut(s)	604, 763
AspS9I	GGNCC	2 cut(s)	136, 156
AsuHPI	GGTGA	6 cut(s)	37, 169, 188, 355, 512, 569
AsuII	TTCGAA	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	136
BanII	GRGCYC	2 cut(s)	205, 337
BbsI	GAAGAC	1 cut(s)	699
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	1 cut(s)	618
BccI	CCATC	6 cut(s)	57, 91, 475, 554, 682, 842
BceAI	ACGGC	1 cut(s)	337
BciT130I	CCWGG	1 cut(s)	134
BclI	TGATCA	1 cut(s)	354
BfaI	CTAG	1 cut(s)	456
BfoI	RGCGCY	1 cut(s)	764
BfuAI	ACCTGC	1 cut(s)	369
BisI	GCNGC	2 cut(s)	232, 632
BlsI	GCNGC	2 cut(s)	233, 633
Bme1390I	CCNGG	1 cut(s)	134
Bme18I	GGWCC	1 cut(s)	136
BmgT120I	GGNCC	2 cut(s)	136, 156
BmrFI	CCNGG	1 cut(s)	134
BpiI	GAAGAC	1 cut(s)	699
Bpu14I	TTCGAA	1 cut(s)	58
BpuEI	CTTGAG	1 cut(s)	386
BsaHI	GRCGYC	1 cut(s)	492
BsaJI	CCNNGG	3 cut(s)	132, 325, 822
BsaXI	ACNNNNNCTCC	2 cut(s)	891, 921
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse3DI	GCAATG	5 cut(s)	72, 240, 626, 850, 901
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	3 cut(s)	132, 325, 822
BseGI	GGATG	2 cut(s)	68, 207
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMI	GCAATG	5 cut(s)	72, 240, 626, 850, 901
BseRI	GAGGAG	1 cut(s)	609
BseX3I	CGGCCG	1 cut(s)	328
BseXI	GCAGC	1 cut(s)	618
BseYI	CCCAGC	1 cut(s)	170
BsgI	GTGCAG	1 cut(s)	205
Bsh1285I	CGRYCG	1 cut(s)	331
BshFI	GGCC	4 cut(s)	158, 282, 324, 330
BsiEI	CGRYCG	1 cut(s)	331
BsiHKAI	GWGCWC	1 cut(s)	258
BslI	CCNNNNNNNGG	1 cut(s)	153
BsnI	GGCC	4 cut(s)	158, 282, 324, 330
Bsp119I	TTCGAA	1 cut(s)	58
Bsp1286I	GDGCHC	3 cut(s)	205, 258, 337
Bsp143I	GATC	1 cut(s)	354
BspACI	CCGC	1 cut(s)	232
BspANI	GGCC	4 cut(s)	158, 282, 324, 330
BspMI	ACCTGC	1 cut(s)	369
BspT104I	TTCGAA	1 cut(s)	58
BsrDI	GCAATG	5 cut(s)	72, 240, 626, 850, 901
BssECI	CCNNGG	3 cut(s)	132, 325, 822
BssMI	GATC	1 cut(s)	354
BssNI	GRCGYC	1 cut(s)	492
BssT1I	CCWWGG	1 cut(s)	822
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	1 cut(s)	613
Bst6I	CTCTTC	2 cut(s)	43, 738
BstACI	GRCGYC	1 cut(s)	492
BstBI	TTCGAA	1 cut(s)	58
BstC8I	GCNNGC	3 cut(s)	579, 636, 759
BstF5I	GGATG	2 cut(s)	68, 207
BstH2I	RGCGCY	1 cut(s)	764
BstHHI	GCGC	2 cut(s)	604, 763
BstKTI	GATC	1 cut(s)	357
BstMBI	GATC	1 cut(s)	354
BstMCI	CGRYCG	1 cut(s)	331
BstMWI	GCNNNNNNNGC	1 cut(s)	228
BstNI	CCWGG	1 cut(s)	134
BstNSI	RCATGY	1 cut(s)	638
BstSCI	CCNGG	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	618
BstV2I	GAAGAC	1 cut(s)	699
BstXI	CCANNNNNNTGG	1 cut(s)	829
BstZI	CGGCCG	1 cut(s)	328
BsuRI	GGCC	4 cut(s)	158, 282, 324, 330
BtsCI	GGATG	2 cut(s)	68, 207
BveI	ACCTGC	1 cut(s)	369
Cac8I	GCNNGC	3 cut(s)	579, 636, 759
CfoI	GCGC	2 cut(s)	604, 763
Cfr13I	GGNCC	2 cut(s)	136, 156
CseI	GACGC	1 cut(s)	481
CviAII	CATG	1 cut(s)	635
DpnI	GATC	1 cut(s)	356
DpnII	GATC	1 cut(s)	354
DraIII	CACNNNGTG	1 cut(s)	253
EaeI	YGGCCR	1 cut(s)	328
EagI	CGGCCG	1 cut(s)	328
Eam1104I	CTCTTC	2 cut(s)	43, 738
EarI	CTCTTC	2 cut(s)	43, 738
EclXI	CGGCCG	1 cut(s)	328
Eco130I	CCWWGG	1 cut(s)	822
Eco24I	GRGCYC	2 cut(s)	205, 337
Eco32I	GATATC	1 cut(s)	726
Eco47I	GGWCC	1 cut(s)	136
Eco47III	AGCGCT	1 cut(s)	762
Eco52I	CGGCCG	1 cut(s)	328
EcoO109I	RGGNCCY	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	132
EcoRV	GATATC	1 cut(s)	726
EcoT14I	CCWWGG	1 cut(s)	822
EcoT38I	GRGCYC	2 cut(s)	205, 337
ErhI	CCWWGG	1 cut(s)	822
FaeI	CATG	1 cut(s)	638
FatI	CATG	1 cut(s)	634
FbaI	TGATCA	1 cut(s)	354
Fnu4HI	GCNGC	2 cut(s)	232, 632
FokI	GGATG	2 cut(s)	55, 194
FriOI	GRGCYC	2 cut(s)	205, 337
Fsp4HI	GCNGC	2 cut(s)	232, 632
FspBI	CTAG	1 cut(s)	456
GlaI	GCGC	2 cut(s)	603, 762
GluI	GCNGC	2 cut(s)	232, 632
GsaI	CCCAGC	1 cut(s)	174
HaeII	RGCGCY	1 cut(s)	764
HaeIII	GGCC	4 cut(s)	158, 282, 324, 330
HgaI	GACGC	1 cut(s)	481
HhaI	GCGC	2 cut(s)	604, 763
Hin1I	GRCGYC	1 cut(s)	492
Hin1II	CATG	1 cut(s)	638
Hin6I	GCGC	2 cut(s)	602, 761
HinP1I	GCGC	2 cut(s)	602, 761
HincII	GTYRAC	1 cut(s)	910
HindII	GTYRAC	1 cut(s)	910
HindIII	AAGCTT	3 cut(s)	23, 569, 673
HinfI	GANTC	2 cut(s)	418, 547
HphI	GGTGA	6 cut(s)	37, 169, 188, 355, 512, 569
Hpy166II	GTNNAC	2 cut(s)	192, 910
Hpy188I	TCNGA	1 cut(s)	552
Hpy188III	TCNNGA	5 cut(s)	403, 422, 523, 591, 814
Hpy8I	GTNNAC	2 cut(s)	192, 910
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	3 cut(s)	157, 405, 430
HpyCH4III	ACNGT	1 cut(s)	613
HpyCH4IV	ACGT	1 cut(s)	912
HpyCH4V	TGCA	7 cut(s)	222, 577, 634, 638, 645, 757, 843
HpyF10VI	GCNNNNNNNGC	1 cut(s)	228
HpySE526I	ACGT	1 cut(s)	912
Hsp92I	GRCGYC	1 cut(s)	492
Hsp92II	CATG	1 cut(s)	638
HspAI	GCGC	2 cut(s)	602, 761
Ksp22I	TGATCA	1 cut(s)	354
Kzo9I	GATC	1 cut(s)	354
Lsp1109I	GCAGC	1 cut(s)	618
MaeI	CTAG	1 cut(s)	456
MaeII	ACGT	1 cut(s)	912
MaeIII	GTNAC	3 cut(s)	307, 706, 811
MalI	GATC	1 cut(s)	356
MboI	GATC	1 cut(s)	354
MboII	GAAGA	8 cut(s)	30, 44, 47, 98, 484, 487, 704, 755
MhlI	GDGCHC	3 cut(s)	205, 258, 337
MluCI	AATT	3 cut(s)	412, 748, 834
MmeI	TCCRAC	1 cut(s)	810
MseI	TTAA	4 cut(s)	567, 585, 714, 934
MspR9I	CCNGG	1 cut(s)	134
MvaI	CCWGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	1 cut(s)	228
NdeII	GATC	1 cut(s)	354
NlaIII	CATG	1 cut(s)	638
NmeAIII	GCCGAG	2 cut(s)	306, 356
NmuCI	GTSAC	3 cut(s)	307, 706, 811
NspI	RCATGY	1 cut(s)	638
NspV	TTCGAA	1 cut(s)	58
PaeI	GCATGC	1 cut(s)	638
PfeI	GAWTC	2 cut(s)	418, 547
PkrI	GCNGC	2 cut(s)	233, 633
PpuMI	RGGWCCY	1 cut(s)	136
PsiI	TTATAA	1 cut(s)	621
Psp5II	RGGWCCY	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	132
PspFI	CCCAGC	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	132
PspPI	GGNCC	2 cut(s)	136, 156
PspPPI	RGGWCCY	1 cut(s)	136
SaqAI	TTAA	4 cut(s)	567, 585, 714, 934
SatI	GCNGC	2 cut(s)	232, 632
Sau3AI	GATC	1 cut(s)	354
Sau96I	GGNCC	2 cut(s)	136, 156
ScrFI	CCNGG	1 cut(s)	134
SduI	GDGCHC	3 cut(s)	205, 258, 337
SfuI	TTCGAA	1 cut(s)	58
SinI	GGWCC	1 cut(s)	136
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
SphI	GCATGC	1 cut(s)	638
Sse9I	AATT	3 cut(s)	412, 748, 834
SsiI	CCGC	1 cut(s)	232
SspI	AATATT	1 cut(s)	718
SspMI	CTAG	1 cut(s)	456
StyD4I	CCNGG	1 cut(s)	132
StyI	CCWWGG	1 cut(s)	822
TaaI	ACNGT	1 cut(s)	613
TaiI	ACGT	1 cut(s)	915
TaqI	TCGA	7 cut(s)	58, 114, 141, 237, 258, 416, 590
TasI	AATT	3 cut(s)	412, 748, 834
TauI	GCSGC	1 cut(s)	234
TfiI	GAWTC	2 cut(s)	418, 547
Tru1I	TTAA	4 cut(s)	567, 585, 714, 934
Tru9I	TTAA	4 cut(s)	567, 585, 714, 934
TseFI	GTSAC	3 cut(s)	307, 706, 811
TseI	GCWGC	1 cut(s)	631
Tsp45I	GTSAC	3 cut(s)	307, 706, 811
TspDTI	ATGAA	2 cut(s)	542, 695
VpaK11BI	GGWCC	1 cut(s)	136
XapI	RAATTY	2 cut(s)	748, 834
XceI	RCATGY	1 cut(s)	638
XspI	CTAG	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.