Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004806

Physical Location & Seq

Genomic Coordinates Reverse (-)

68618122 .. 68620225

Gene Structure 2104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005572

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGGCCAGGGCGGATTCTCTTTGCCGACGTTGGAAGATCTCGTGTCGGTTTGGAGAGGGGCGGCGGGGTTGGCTTTGATCATCGACGCCATTGACAACGAGCTTGTAGCCTTCGCCTCCGCGGAAGCAGCAAGGACTGCTCTGATGATCAGTAGCATAATCGAGGAAATGCCTCACTCAATTGGCCTACCCCTAGATGAACACATTTTCTTCACACTCATTCACGGTCTTGGCCGTGACCACTTGGTGAAGCAAATGGTTAAGATGCTTGACTTGGTTGCCAGGTACAACCAAAAACCTTCTCTCAAGATATTCAATACGATACTTGATGTCCTTGTAAAGGAAGACAGAGATATAGCTAGGGAGTTTTATAGGAAGAAGATGATGGCAAGTGGCGTCAAGGGTGATGATTATACTTCCGGTATCTTGATGAAAAGTTTTTTCTTGACTAATCGAATTGGTGATGGTTTTAAGCTTTTGCAAGTCATTGAATCGAGGGGAATTGCCCTGAAATACTGTGGTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

176

Amino Acids

19.42

Weight (kDa)

6.42

Isoelectric Point (pI)

31.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17525
fragaria_vesca	FvH4_7g03710 FvH4_7g03710 FvH4_7g03710
malus_domestica	MD05G1037900.v1.1 MD10G1041700.v1.1
prunus_persica	Prupe.2G066000_v2.0.a1
pyrus_communis	pycom05g02810 pycom10g02880
rosa_chinensis	RchiOBHm_Chr1g0326501 RchiOBHm_Chr1g0326531 RchiOBHm_Chr1g0326571 RchiOBHm_Chr1g0326581
rosa_laevigata	RLG00000005572 RLG00000006170 RLG00000023929 RLG00000030068
rosa_multiflora	Rmu_sc0001355.1_g000018
rosa_roxburghii	Rroxscaffold_2G00146300 Rroxscaffold_4G00323710 Rroxscaffold_4G00327680
rosa_rugosa	Rorug01G0061000
rosa_samantha	Rh1BG062600 Rh1BG062800 Rh1CG075400 Rh1DG082100 Rh1DG082200 Rh1DG082400 Rh7BG001800 Rh7DG001700
rosa_wichuraiana	Rw1G006130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	526
AccII	CGCG	1 cut(s)	122
AciI	CCGC	5 cut(s)	12, 62, 65, 120, 122
AcoI	YGGCCR	1 cut(s)	232
AcyI	GRCGYC	2 cut(s)	87, 396
AdeI	CACNNNGTG	1 cut(s)	247
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	1 cut(s)	340
AgsI	TTSAA	2 cut(s)	316, 491
AjnI	CCWGG	2 cut(s)	6, 281
AluBI	AGCT	3 cut(s)	103, 359, 475
AluI	AGCT	3 cut(s)	103, 359, 475
AoxI	GGCC	3 cut(s)	4, 184, 232
ApeKI	GCWGC	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	3 cut(s)	259, 416, 473
BauI	CACGAG	1 cut(s)	41
BbsI	GAAGAC	1 cut(s)	351
BbvI	GCAGC	1 cut(s)	140
BccI	CCATC	2 cut(s)	379, 458
BceAI	ACGGC	1 cut(s)	219
BciT130I	CCWGG	2 cut(s)	8, 283
BclI	TGATCA	2 cut(s)	78, 147
BfaI	CTAG	2 cut(s)	194, 360
BglII	AGATCT	1 cut(s)	37
BisI	GCNGC	2 cut(s)	63, 129
BlsI	GCNGC	2 cut(s)	64, 130
Bme1390I	CCNGG	2 cut(s)	8, 283
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	2 cut(s)	8, 283
BmsI	GCATC	1 cut(s)	255
BpiI	GAAGAC	1 cut(s)	351
BpuEI	CTTGAG	1 cut(s)	290
BsaHI	GRCGYC	2 cut(s)	87, 396
BsaJI	CCNNGG	2 cut(s)	7, 120
BsaWI	WCCGGW	1 cut(s)	419
Bsc4I	CCNNNNNNNGG	1 cut(s)	340
BseBI	CCWGG	2 cut(s)	8, 283
BseDI	CCNNGG	2 cut(s)	7, 120
BseLI	CCNNNNNNNGG	1 cut(s)	340
BseXI	GCAGC	1 cut(s)	140
Bsh1236I	CGCG	1 cut(s)	122
BshFI	GGCC	3 cut(s)	6, 186, 234
BsiSI	CCGG	1 cut(s)	420
BslI	CCNNNNNNNGG	1 cut(s)	340
BsnI	GGCC	3 cut(s)	6, 186, 234
Bsp143I	GATC	3 cut(s)	37, 78, 147
BspACI	CCGC	5 cut(s)	12, 62, 65, 120, 122
BspANI	GGCC	3 cut(s)	6, 186, 234
BspFNI	CGCG	1 cut(s)	122
BssECI	CCNNGG	2 cut(s)	7, 120
BssMI	GATC	3 cut(s)	37, 78, 147
BssNI	GRCGYC	2 cut(s)	87, 396
BssSI	CACGAG	1 cut(s)	41
Bst2BI	CACGAG	1 cut(s)	41
Bst2UI	CCWGG	2 cut(s)	8, 283
Bst4CI	ACNGT	2 cut(s)	227, 518
BstACI	GRCGYC	2 cut(s)	87, 396
BstAPI	GCANNNNNTGC	1 cut(s)	137
BstDSI	CCRYGG	1 cut(s)	120
BstENI	CCTNNNNNAGG	1 cut(s)	338
BstFNI	CGCG	1 cut(s)	122
BstKTI	GATC	3 cut(s)	40, 81, 150
BstMBI	GATC	3 cut(s)	37, 78, 147
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 128, 137
BstNI	CCWGG	2 cut(s)	8, 283
BstSCI	CCNGG	2 cut(s)	6, 281
BstUI	CGCG	1 cut(s)	122
BstV1I	GCAGC	1 cut(s)	140
BstV2I	GAAGAC	1 cut(s)	351
BstX2I	RGATCY	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	37
BsuRI	GGCC	3 cut(s)	6, 186, 234
BtgI	CCRYGG	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	4
Cfr42I	CCGCGG	1 cut(s)	123
CseI	GACGC	2 cut(s)	95, 385
Csp6I	GTAC	1 cut(s)	286
CviJI	RGCY	8 cut(s)	6, 74, 103, 110, 186, 234, 359, 475
CviKI_1	RGCY	8 cut(s)	6, 74, 103, 110, 186, 234, 359, 475
CviQI	GTAC	1 cut(s)	286
DpnI	GATC	3 cut(s)	39, 80, 149
DpnII	GATC	3 cut(s)	37, 78, 147
DraIII	CACNNNGTG	1 cut(s)	247
EaeI	YGGCCR	1 cut(s)	232
EciI	GGCGGA	1 cut(s)	27
EcoNI	CCTNNNNNAGG	1 cut(s)	338
EcoRII	CCWGG	2 cut(s)	6, 281
FaiI	YATR	5 cut(s)	158, 356, 372, 414, 526
FauI	CCCGC	1 cut(s)	58
FbaI	TGATCA	2 cut(s)	78, 147
Fnu4HI	GCNGC	2 cut(s)	63, 129
Fsp4HI	GCNGC	2 cut(s)	63, 129
FspBI	CTAG	2 cut(s)	194, 360
GluI	GCNGC	2 cut(s)	63, 129
HaeIII	GGCC	3 cut(s)	6, 186, 234
HapII	CCGG	1 cut(s)	420
HgaI	GACGC	2 cut(s)	95, 385
Hin1I	GRCGYC	2 cut(s)	87, 396
HindIII	AAGCTT	1 cut(s)	473
HinfI	GANTC	2 cut(s)	15, 491
HpaII	CCGG	1 cut(s)	420
HphI	GGTGA	3 cut(s)	259, 416, 473
Hpy188I	TCNGA	1 cut(s)	144
Hpy188III	TCNNGA	3 cut(s)	307, 427, 445
Hpy99I	CGWCG	2 cut(s)	31, 89
HpyAV	CCTTC	2 cut(s)	121, 309
HpyCH4III	ACNGT	2 cut(s)	227, 518
HpyCH4IV	ACGT	1 cut(s)	29
HpyCH4V	TGCA	1 cut(s)	481
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 128, 137
HpySE526I	ACGT	1 cut(s)	29
Hsp92I	GRCGYC	2 cut(s)	87, 396
Ksp22I	TGATCA	2 cut(s)	78, 147
KspI	CCGCGG	1 cut(s)	123
Kzo9I	GATC	3 cut(s)	37, 78, 147
LpnPI	CCDG	5 cut(s)	20, 268, 295, 433, 521
Lsp1109I	GCAGC	1 cut(s)	140
LweI	GCATC	1 cut(s)	255
MaeI	CTAG	2 cut(s)	194, 360
MaeII	ACGT	1 cut(s)	29
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	3 cut(s)	39, 80, 149
MboI	GATC	3 cut(s)	37, 78, 147
MboII	GAAGA	5 cut(s)	47, 202, 356, 388, 391
MfeI	CAATTG	1 cut(s)	180
MflI	RGATCY	1 cut(s)	37
MluCI	AATT	3 cut(s)	180, 456, 501
MmeI	TCCRAC	1 cut(s)	12
MnlI	CCTC	5 cut(s)	50, 127, 157, 183, 489
MseI	TTAA	2 cut(s)	261, 471
MspA1I	CMGCKG	1 cut(s)	122
MspI	CCGG	1 cut(s)	420
MspR9I	CCNGG	2 cut(s)	8, 283
MunI	CAATTG	1 cut(s)	180
MvaI	CCWGG	2 cut(s)	8, 283
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	3 cut(s)	71, 128, 137
NdeII	GATC	3 cut(s)	37, 78, 147
NmuCI	GTSAC	1 cut(s)	236
PfeI	GAWTC	2 cut(s)	15, 491
PkrI	GCNGC	2 cut(s)	64, 130
PsiI	TTATAA	1 cut(s)	526
Psp6I	CCWGG	2 cut(s)	6, 281
PspGI	CCWGG	2 cut(s)	6, 281
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	37
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SacII	CCGCGG	1 cut(s)	123
SaqAI	TTAA	2 cut(s)	261, 471
SatI	GCNGC	2 cut(s)	63, 129
Sau3AI	GATC	3 cut(s)	37, 78, 147
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	8, 283
SetI	ASST	6 cut(s)	32, 105, 287, 301, 361, 477
SfaNI	GCATC	1 cut(s)	255
Sfr303I	CCGCGG	1 cut(s)	123
SgrBI	CCGCGG	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	3 cut(s)	180, 456, 501
SsiI	CCGC	5 cut(s)	12, 62, 65, 120, 122
SspMI	CTAG	2 cut(s)	194, 360
StyD4I	CCNGG	2 cut(s)	6, 281
TaaI	ACNGT	2 cut(s)	227, 518
TaiI	ACGT	1 cut(s)	32
TaqI	TCGA	4 cut(s)	84, 162, 454, 494
TasI	AATT	3 cut(s)	180, 456, 501
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	2 cut(s)	15, 491
Tru1I	TTAA	2 cut(s)	261, 471
Tru9I	TTAA	2 cut(s)	261, 471
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	2 cut(s)	213, 446
XagI	CCTNNNNNAGG	1 cut(s)	338
XspI	CTAG	2 cut(s)	194, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.