RchiOBHm_Chr1g0326531

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0004806
Physical Location & Seq
Forward (+)
15071892 .. 15075186
3295 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55615

Sequence Viewer

Length: 324 bp
ATGCCCCACTCAATTGGCCTCCCCCCAGATGACCACATTTTCGTCACACTGATTCATGGCCTCGGCCGAGCTCATTTGGTGAAGCAAGTGATCAAGGTGCTTGACTTGGTTCGCAGGTATAACCAGAAACCTTCTCTCAAGATATTCAATTCGATTCTTGATGTTCTTGTGAAGGAGGATATAGATATAGCTAGGGAGTTTTATAGGAAGAAGATGGTGGCAAGTGGAGTCAGGGGTGATGATTATACTTTTAGTATCTTGATGAAAGGTCTTTGTTTGACGAATCGGATTGGTGATGGTTTGCAAGCTTTTGCAGGCTATTAA

Protein Analysis

107

Amino Acids

12.08

Weight (kDa)

9.37

Isoelectric Point (pI)

33.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 45 - 92 9.6e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 105
AcoI YGGCCR 1 cut(s) 64
AgsI TTSAA 1 cut(s) 148
AluBI AGCT 3 cut(s) 71, 191, 308
AluI AGCT 3 cut(s) 71, 191, 308
Alw21I GWGCWC 1 cut(s) 73
AoxI GGCC 3 cut(s) 16, 58, 64
ArsI GACNNNNNNTTYG 2 cut(s) 23, 55
AsuHPI GGTGA 3 cut(s) 91, 248, 305
BanII GRGCYC 1 cut(s) 73
Bbv12I GWGCWC 1 cut(s) 73
BccI CCATC 2 cut(s) 208, 290
BclI TGATCA 1 cut(s) 90
BfaI CTAG 1 cut(s) 192
BfuAI ACCTGC 1 cut(s) 105
BpuEI CTTGAG 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 61
BseDI CCNNGG 1 cut(s) 61
BseX3I CGGCCG 1 cut(s) 64
Bsh1285I CGRYCG 1 cut(s) 67
BshFI GGCC 3 cut(s) 18, 60, 66
BsiEI CGRYCG 1 cut(s) 67
BsiHKAI GWGCWC 1 cut(s) 73
BsnI GGCC 3 cut(s) 18, 60, 66
Bsp1286I GDGCHC 1 cut(s) 73
Bsp143I GATC 1 cut(s) 90
BspANI GGCC 3 cut(s) 18, 60, 66
BspMI ACCTGC 1 cut(s) 105
BssECI CCNNGG 1 cut(s) 61
BssMI GATC 1 cut(s) 90
BstC8I GCNNGC 2 cut(s) 306, 316
BstKTI GATC 1 cut(s) 93
BstMBI GATC 1 cut(s) 90
BstMCI CGRYCG 1 cut(s) 67
BstXI CCANNNNNNTGG 1 cut(s) 14
BstZI CGGCCG 1 cut(s) 64
BsuRI GGCC 3 cut(s) 18, 60, 66
BtsIMutI CAGTG 1 cut(s) 47
BveI ACCTGC 1 cut(s) 105
Cac8I GCNNGC 2 cut(s) 306, 316
CviAII CATG 1 cut(s) 56
CviJI RGCY 7 cut(s) 18, 60, 66, 71, 191, 308, 318
CviKI_1 RGCY 7 cut(s) 18, 60, 66, 71, 191, 308, 318
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
EaeI YGGCCR 1 cut(s) 64
EagI CGGCCG 1 cut(s) 64
Ecl136II GAGCTC 1 cut(s) 71
EclXI CGGCCG 1 cut(s) 64
Eco24I GRGCYC 1 cut(s) 73
Eco52I CGGCCG 1 cut(s) 64
Eco53kI GAGCTC 1 cut(s) 71
EcoICRI GAGCTC 1 cut(s) 71
EcoT38I GRGCYC 1 cut(s) 73
FaeI CATG 1 cut(s) 59
FaiI YATR 6 cut(s) 57, 120, 182, 188, 204, 246
FatI CATG 1 cut(s) 55
FbaI TGATCA 1 cut(s) 90
FriOI GRGCYC 1 cut(s) 73
FspBI CTAG 1 cut(s) 192
HaeIII GGCC 3 cut(s) 18, 60, 66
Hin1II CATG 1 cut(s) 59
HindIII AAGCTT 1 cut(s) 306
HinfI GANTC 4 cut(s) 52, 154, 228, 283
HphI GGTGA 3 cut(s) 91, 248, 305
Hpy188I TCNGA 1 cut(s) 288
Hpy188III TCNNGA 3 cut(s) 139, 158, 259
HpyAV CCTTC 2 cut(s) 141, 166
HpyCH4V TGCA 2 cut(s) 304, 314
Hsp92II CATG 1 cut(s) 59
Ksp22I TGATCA 1 cut(s) 90
Kzo9I GATC 1 cut(s) 90
LpnPI CCDG 5 cut(s) 39, 100, 137, 217, 300
MaeI CTAG 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 43
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MboII GAAGA 2 cut(s) 220, 223
MfeI CAATTG 1 cut(s) 12
MhlI GDGCHC 1 cut(s) 73
MluCI AATT 2 cut(s) 12, 148
MlyI GAGTC 1 cut(s) 237
MnlI CCTC 3 cut(s) 29, 71, 169
MseI TTAA 1 cut(s) 322
MunI CAATTG 1 cut(s) 12
NdeII GATC 1 cut(s) 90
NlaIII CATG 1 cut(s) 59
NmeAIII GCCGAG 2 cut(s) 42, 92
NmuCI GTSAC 1 cut(s) 43
PfeI GAWTC 3 cut(s) 52, 154, 283
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
Psp124BI GAGCTC 1 cut(s) 73
SacI GAGCTC 1 cut(s) 73
SaqAI TTAA 1 cut(s) 322
Sau3AI GATC 1 cut(s) 90
SchI GAGTC 1 cut(s) 237
SduI GDGCHC 1 cut(s) 73
SetI ASST 7 cut(s) 73, 99, 119, 133, 193, 271, 310
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 2 cut(s) 12, 148
SspMI CTAG 1 cut(s) 192
SstI GAGCTC 1 cut(s) 73
TaqI TCGA 1 cut(s) 152
TasI AATT 2 cut(s) 12, 148
TfiI GAWTC 3 cut(s) 52, 154, 283
Tru1I TTAA 1 cut(s) 322
Tru9I TTAA 1 cut(s) 322
TscAI CASTG 1 cut(s) 54
TseFI GTSAC 1 cut(s) 43
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 2 cut(s) 44, 278
TspRI CASTG 1 cut(s) 54
XspI CTAG 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.