MD05G1166200.v1.1

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
29564846 .. 29568381
3536 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1166200.v1.1.491

Sequence Viewer

Length: 1719 bp
ATGGACGAGGACTTCGATATGCCGGGGGCGGAGGAGATGAACGAGGACTTCGATCTCCCCGATGAGGGGCCGGTGCTGAAGGTCGGCGAGGAGAAGGAGATCGGCCACCAGGGCTTGAAGAAGAAGCTCCTCAAGGAAGGTGAAGGCTGGGACACCCCCAATAATGGCGACGAAGTTGAAGTTCATTATACTGGGACATTGCTGGACGGGACTCAGTTCGATTCGAGCCGCGACGGGGGGACTCCGTTCAAGTTCACTCTTGGACAAGGGCAAGTGATTAAAGGATGGGATGAAGGTATTAGAACAATGAAGAAAGGTGAGAATGCCCTTTTCACCATTCCTCCTGCGTTGGCTTATGGTGAGTCTGGATCGCCACCAACTATCCCTCCCAGTGCCACATTGCAATTCGACGTTGAATTGCTATCGTGGACCAGTGTCAATGACATATCCAAGGATGGTGGTGTAATCAAGAAGATCTTGAAAGAGGGAGAAAAATGGGAGAACCCAAAAGACCTCGACGAAGTTATAGTTAATTTTGAGGCGCAGCTTGAAGATAAAACACTTGTTGCAAAATCTCAAGATGTGGAATTCACTATCAAAGATGGTTACTTCTGTCCTGCAATTTCAAAGGCTGTTAAAACAATGAAGAAGGGGGAGAAGGTATTGTTAACGGTTAAACCACAATATGGATTTGGGGATAAAGGCAAACCTGCATCTGGTTCCGAGGGTGCAGTTCCTCCAAATACAACTCTGCATATCACTTTAGAGTTGGTATCATGGAGAACTGTATCTGAAGTGACAGATGACAAGAAGGTTATTAAGAAGATCCTGAAAGAAGGGGAGGGATATGAGCGTCCAAATGAAGGGGCTGTTGTTAAATTGAAATTGATTGGGAAGCTGCAAGATGGGAAGGAATTTTTGAAGAAAGGTCATGCCGAAGGAGAAGACCTGTTCGAGTTTAAAACAGATGAAGAGCAAGTGATTGACGGGCTTGATAGAGCTGTATTGACAATGAAGAAGGGTGAGGTAGCACTCCTGACTATTGCACCAGAGTATGCATTTGGCTCTTCGGAGTCCCAGCAGGAGTTGGCTGTGGTACCTCCTAACTCAACTGTCAACTATGAGGTTGAGCTTGCATCTTTTGAGAAGGATAAGGAATCGTGGGACATGAATACTGAGGAAAAAATTGAAGCTGCTGGTAAGAAGAAGGAAGAAGGGAATGCTTTGTTTAAGGCGGGTAAATATGCAAGAGCTTCCAAGAGATATGAGAAGGCTGTGAAGTACATCGACTATGACTCTAGCTTCAGTGAAGAAGCGAAAAAACAAGCCAAGGCGTTGAAGGTTGCCTGCAATCTTAACGATGCAGCTTGCAAGCTGAAGCTGAAAGATTATAAACAGGCTGAAAAATTGTGTTCCAAGGTGTTGGAACTCGAGGGCAGAAATGTGAAGGCTCTGTACAGAAGGGCTCAGGCATATATTCAGCTGGCAGATTTGGATTTAGCTGAGCTTGACATCAAGAAAGCTCTTGAAATAGACCCTAACAACAGGGATGTGAAGCTGGAGCACAAGACACTGAAGGAGAAGATGAAAGAATACAATAAAAAGGAGGCCAAGTTCTATGGCAACATGTTTGCCAAATTGACCAAGTCGGACTCTCTCGATAACAATAAAGCAACGGATAAAGACGCGGAACCCATGAGCGTAGACAGCAAGGCATAG

Protein Analysis

573

Amino Acids

63.64

Weight (kDa)

5.15

Isoelectric Point (pI)

28.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 51 - 141 3.5e-37 FKBP-type peptidyl-prolyl cis-trans isomerase
FKBP_C PF00254 167 - 258 2.5e-17 FKBP-type peptidyl-prolyl cis-trans isomerase
FKBP_C PF00254 283 - 378 1.8e-20 FKBP-type peptidyl-prolyl cis-trans isomerase
TPR_19 PF14559 459 - 519 7.2e-06 Tetratricopeptide repeat
TPR_1 PF00515 482 - 515 4.4e-07 Tetratricopeptide repeat
TPR_8 PF13181 483 - 515 5.2e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1392
Acc36I ACCTGC 1 cut(s) 718
Acc65I GGTACC 1 cut(s) 1096
AccB1I GGYRCC 1 cut(s) 1096
AccB7I CCANNNNNTGG 1 cut(s) 686
AccI GTMKAC 1 cut(s) 1704
AccII CGCG 2 cut(s) 231, 1688
AciI CCGC 4 cut(s) 29, 229, 1235, 1688
AclWI GGATC 2 cut(s) 376, 820
AcoI YGGCCR 1 cut(s) 103
AcsI RAATTY 2 cut(s) 587, 914
AcuI CTGAAG 5 cut(s) 98, 813, 1288, 1397, 1595
AfaI GTAC 3 cut(s) 1098, 1283, 1457
AfiI CCNNNNNNNGG 8 cut(s) 64, 65, 66, 164, 235, 686, 716, 863
AflIII ACRYGT 1 cut(s) 1626
AjnI CCWGG 1 cut(s) 108
AloI GAACNNNNNNTCC 2 cut(s) 1598, 1630
Alw21I GWGCWC 1 cut(s) 1566
AlwI GGATC 2 cut(s) 376, 820
Ama87I CYCGRG 1 cut(s) 1430
AoxI GGCC 3 cut(s) 68, 103, 1608
ApeKI GCWGC 4 cut(s) 544, 898, 1193, 1364
ApoI RAATTY 2 cut(s) 587, 914
ArsI GACNNNNNNTTYG 1 cut(s) 28
Asp718I GGTACC 1 cut(s) 1096
AspLEI GCGC 1 cut(s) 544
AspS9I GGNCC 2 cut(s) 68, 429
AsuC2I CCSGG 1 cut(s) 24
AsuHPI GGTGA 5 cut(s) 152, 325, 329, 371, 1034
AvaI CYCGRG 1 cut(s) 1430
AvaII GGWCC 1 cut(s) 429
BanI GGYRCC 1 cut(s) 1096
BanII GRGCYC 1 cut(s) 1468
BarI GAAGNNNNNNTAC 2 cut(s) 1439, 1471
BbsI GAAGAC 1 cut(s) 951
Bbv12I GWGCWC 1 cut(s) 1566
BbvI GCAGC 4 cut(s) 556, 885, 1180, 1376
BccI CCATC 4 cut(s) 279, 449, 596, 899
BciT130I CCWGG 1 cut(s) 110
BcnI CCSGG 1 cut(s) 24
BfaI CTAG 1 cut(s) 1299
BfuAI ACCTGC 1 cut(s) 718
BglI GCCNNNNNGGC 1 cut(s) 111
BglII AGATCT 1 cut(s) 474
BisI GCNGC 5 cut(s) 229, 545, 899, 1194, 1365
BlpI GCTNAGC 1 cut(s) 1503
BlsI GCNGC 5 cut(s) 230, 546, 900, 1195, 1366
Bme1390I CCNGG 2 cut(s) 24, 110
Bme18I GGWCC 1 cut(s) 429
BmeT110I CYCGRG 1 cut(s) 1430
BmgT120I GGNCC 2 cut(s) 68, 429
BmiI GGNNCC 4 cut(s) 69, 721, 1098, 1692
BmrFI CCNGG 2 cut(s) 24, 110
BmrI ACTGGG 2 cut(s) 201, 384
BmsI GCATC 3 cut(s) 722, 1145, 1351
BmuI ACTGGG 2 cut(s) 201, 384
BoxI GACNNNNGTC 1 cut(s) 434
BpiI GAAGAC 1 cut(s) 951
BpmI CTGGAG 1 cut(s) 1580
Bpu10I CCTNAGC 1 cut(s) 1467
Bpu1102I GCTNAGC 1 cut(s) 1503
BpuEI CTTGAG 2 cut(s) 116, 561
BpuMI CCSGG 1 cut(s) 24
BsaJI CCNNGG 6 cut(s) 23, 109, 450, 723, 1329, 1416
BsaXI ACNNNNNCTCC 6 cut(s) 325, 355, 370, 400, 1598, 1628
Bsc4I CCNNNNNNNGG 8 cut(s) 64, 65, 66, 164, 235, 686, 716, 863
Bse118I RCCGGY 1 cut(s) 70
Bse1I ACTGG 3 cut(s) 196, 390, 432
Bse3DI GCAATG 2 cut(s) 197, 398
BseBI CCWGG 1 cut(s) 110
BseDI CCNNGG 6 cut(s) 23, 109, 450, 723, 1329, 1416
BseGI GGATG 4 cut(s) 290, 295, 460, 1555
BseLI CCNNNNNNNGG 8 cut(s) 64, 65, 66, 164, 235, 686, 716, 863
BseMI GCAATG 2 cut(s) 197, 398
BseMII CTCAG 4 cut(s) 227, 1167, 1481, 1494
BseNI ACTGG 3 cut(s) 196, 390, 432
BseRI GAGGAG 3 cut(s) 47, 104, 119
BseXI GCAGC 4 cut(s) 556, 885, 1180, 1376
BseYI CCCAGC 2 cut(s) 147, 1077
BsgI GTGCAG 1 cut(s) 750
Bsh1236I CGCG 2 cut(s) 231, 1688
BshFI GGCC 3 cut(s) 70, 105, 1610
BshNI GGYRCC 1 cut(s) 1096
BsiHKAI GWGCWC 1 cut(s) 1566
BsiHKCI CYCGRG 1 cut(s) 1430
BsiSI CCGG 2 cut(s) 23, 71
BslFI GGGAC 6 cut(s) 164, 208, 223, 253, 1060, 1178
BslI CCNNNNNNNGG 8 cut(s) 64, 65, 66, 164, 235, 686, 716, 863
BsmFI GGGAC 6 cut(s) 164, 208, 223, 253, 1060, 1178
BsmI GAATGC 2 cut(s) 328, 1225
BsnI GGCC 3 cut(s) 70, 105, 1610
BsoBI CYCGRG 1 cut(s) 1430
Bsp1286I GDGCHC 2 cut(s) 1468, 1566
Bsp1407I TGTACA 1 cut(s) 1455
Bsp143I GATC 5 cut(s) 52, 99, 368, 474, 825
Bsp1720I GCTNAGC 1 cut(s) 1503
BspACI CCGC 4 cut(s) 29, 229, 1235, 1688
BspANI GGCC 3 cut(s) 70, 105, 1610
BspCNI CTCAG 4 cut(s) 226, 1168, 1480, 1495
BspFNI CGCG 2 cut(s) 231, 1688
BspLI GGNNCC 4 cut(s) 69, 721, 1098, 1692
BspMI ACCTGC 1 cut(s) 718
BspPI GGATC 2 cut(s) 376, 820
BspQI GCTCTTC 2 cut(s) 966, 1072
BspT107I GGYRCC 1 cut(s) 1096
BsrDI GCAATG 2 cut(s) 197, 398
BsrFI RCCGGY 1 cut(s) 70
BsrGI TGTACA 1 cut(s) 1455
BsrI ACTGG 3 cut(s) 196, 390, 432
BssAI RCCGGY 1 cut(s) 70
BssECI CCNNGG 6 cut(s) 23, 109, 450, 723, 1329, 1416
BssMI GATC 5 cut(s) 52, 99, 368, 474, 825
BssT1I CCWWGG 3 cut(s) 450, 1329, 1416
Bst2UI CCWGG 1 cut(s) 110
Bst4CI ACNGT 3 cut(s) 673, 787, 1114
Bst6I CTCTTC 2 cut(s) 966, 1072
BstAUI TGTACA 1 cut(s) 1455
BstC8I GCNNGC 5 cut(s) 1134, 1348, 1369, 1373, 1485
BstDEI CTNAG 4 cut(s) 213, 1176, 1467, 1503
BstF5I GGATG 4 cut(s) 290, 295, 460, 1555
BstFNI CGCG 2 cut(s) 231, 1688
BstHHI GCGC 1 cut(s) 544
BstKTI GATC 5 cut(s) 55, 102, 371, 477, 828
BstMBI GATC 5 cut(s) 52, 99, 368, 474, 825
BstMWI GCNNNNNNNGC 2 cut(s) 111, 1707
BstNI CCWGG 1 cut(s) 110
BstNSI RCATGY 1 cut(s) 1630
BstPAI GACNNNNGTC 1 cut(s) 434
BstSCI CCNGG 2 cut(s) 22, 108
BstUI CGCG 2 cut(s) 231, 1688
BstV1I GCAGC 4 cut(s) 556, 885, 1180, 1376
BstV2I GAAGAC 1 cut(s) 951
BstX2I RGATCY 2 cut(s) 474, 825
BstXI CCANNNNNNTGG 1 cut(s) 1423
BstYI RGATCY 2 cut(s) 474, 825
BsuRI GGCC 3 cut(s) 70, 105, 1610
BtsCI GGATG 4 cut(s) 290, 295, 460, 1555
BtsIMutI CAGTG 4 cut(s) 397, 439, 1312, 1571
BveI ACCTGC 1 cut(s) 718
Cac8I GCNNGC 5 cut(s) 1134, 1348, 1369, 1373, 1485
CfoI GCGC 1 cut(s) 544
Cfr10I RCCGGY 1 cut(s) 70
Cfr13I GGNCC 2 cut(s) 68, 429
CseI GACGC 2 cut(s) 842, 1694
Csp6I GTAC 3 cut(s) 1097, 1282, 1456
CspCI CAANNNNNGTGG 2 cut(s) 439, 474
CviAII CATG 5 cut(s) 777, 932, 1168, 1627, 1696
CviQI GTAC 3 cut(s) 1097, 1282, 1456
DdeI CTNAG 4 cut(s) 213, 1176, 1467, 1503
DpnI GATC 5 cut(s) 54, 101, 370, 476, 827
DpnII GATC 5 cut(s) 52, 99, 368, 474, 825
DraI TTTAAA 1 cut(s) 961
EaeI YGGCCR 1 cut(s) 103
Eam1104I CTCTTC 2 cut(s) 966, 1072
EarI CTCTTC 2 cut(s) 966, 1072
EciI GGCGGA 1 cut(s) 44
Eco130I CCWWGG 3 cut(s) 450, 1329, 1416
Eco24I GRGCYC 1 cut(s) 1468
Eco47I GGWCC 1 cut(s) 429
Eco57I CTGAAG 5 cut(s) 98, 813, 1288, 1397, 1595
Eco88I CYCGRG 1 cut(s) 1430
EcoRI GAATTC 1 cut(s) 587
EcoRII CCWGG 1 cut(s) 108
EcoT14I CCWWGG 3 cut(s) 450, 1329, 1416
EcoT22I ATGCAT 1 cut(s) 1060
EcoT38I GRGCYC 1 cut(s) 1468
ErhI CCWWGG 3 cut(s) 450, 1329, 1416
FaeI CATG 5 cut(s) 780, 935, 1171, 1630, 1699
FalI AAGNNNNNCTT 2 cut(s) 461, 493
FaqI GGGAC 6 cut(s) 164, 208, 223, 253, 1060, 1178
FatI CATG 5 cut(s) 776, 931, 1167, 1626, 1695
FauI CCCGC 1 cut(s) 1228
FblI GTMKAC 1 cut(s) 1704
Fnu4HI GCNGC 5 cut(s) 229, 545, 899, 1194, 1365
FokI GGATG 4 cut(s) 297, 302, 467, 1562
FriOI GRGCYC 1 cut(s) 1468
Fsp4HI GCNGC 5 cut(s) 229, 545, 899, 1194, 1365
FspBI CTAG 1 cut(s) 1299
GlaI GCGC 1 cut(s) 543
GluI GCNGC 5 cut(s) 229, 545, 899, 1194, 1365
GsaI CCCAGC 2 cut(s) 151, 1081
GsuI CTGGAG 1 cut(s) 1580
HaeIII GGCC 3 cut(s) 70, 105, 1610
HapII CCGG 2 cut(s) 23, 71
HgaI GACGC 2 cut(s) 842, 1694
HhaI GCGC 1 cut(s) 544
Hin1II CATG 5 cut(s) 780, 935, 1171, 1630, 1699
Hin6I GCGC 1 cut(s) 542
HinP1I GCGC 1 cut(s) 542
HincII GTYRAC 2 cut(s) 669, 1117
HindII GTYRAC 2 cut(s) 669, 1117
HinfI GANTC 8 cut(s) 211, 221, 241, 362, 1073, 1157, 1295, 1652
HpaI GTTAAC 1 cut(s) 669
HpaII CCGG 2 cut(s) 23, 71
HphI GGTGA 5 cut(s) 152, 325, 329, 371, 1034
Hpy166II GTNNAC 5 cut(s) 255, 429, 669, 1117, 1705
Hpy188I TCNGA 4 cut(s) 724, 793, 1072, 1651
Hpy188III TCNNGA 9 cut(s) 366, 469, 478, 578, 829, 1036, 1516, 1526, 1658
Hpy8I GTNNAC 5 cut(s) 255, 429, 669, 1117, 1705
Hpy99I CGWCG 4 cut(s) 173, 236, 413, 521
HpyCH4III ACNGT 3 cut(s) 673, 787, 1114
HpyCH4IV ACGT 1 cut(s) 411
HpyF10VI GCNNNNNNNGC 2 cut(s) 111, 1707
HpyF3I CTNAG 4 cut(s) 213, 1176, 1467, 1503
HpySE526I ACGT 1 cut(s) 411
Hsp92II CATG 5 cut(s) 780, 935, 1171, 1630, 1699
HspAI GCGC 1 cut(s) 542
KpnI GGTACC 1 cut(s) 1100
KspAI GTTAAC 1 cut(s) 669
Kzo9I GATC 5 cut(s) 52, 99, 368, 474, 825
LguI GCTCTTC 2 cut(s) 966, 1072
LmnI GCTCC 2 cut(s) 132, 1561
Lsp1109I GCAGC 4 cut(s) 556, 885, 1180, 1376
LweI GCATC 3 cut(s) 722, 1145, 1351
MaeI CTAG 1 cut(s) 1299
MaeII ACGT 1 cut(s) 411
MaeIII GTNAC 2 cut(s) 605, 796
MalI GATC 5 cut(s) 54, 101, 370, 476, 827
MboI GATC 5 cut(s) 52, 99, 368, 474, 825
MflI RGATCY 2 cut(s) 474, 825
MhlI GDGCHC 2 cut(s) 1468, 1566
MlyI GAGTC 6 cut(s) 205, 235, 371, 1082, 1289, 1646
MmeI TCCRAC 2 cut(s) 1404, 1629
Mph1103I ATGCAT 1 cut(s) 1060
MspA1I CMGCKG 1 cut(s) 1483
MspI CCGG 2 cut(s) 23, 71
MspR9I CCNGG 2 cut(s) 24, 110
Mva1269I GAATGC 2 cut(s) 328, 1225
MvaI CCWGG 1 cut(s) 110
MvnI CGCG 2 cut(s) 231, 1688
MwoI GCNNNNNNNGC 2 cut(s) 111, 1707
NciI CCSGG 1 cut(s) 24
NdeII GATC 5 cut(s) 52, 99, 368, 474, 825
NlaIII CATG 5 cut(s) 780, 935, 1171, 1630, 1699
NlaIV GGNNCC 4 cut(s) 69, 721, 1098, 1692
NmuCI GTSAC 1 cut(s) 796
NsiI ATGCAT 1 cut(s) 1060
NspI RCATGY 1 cut(s) 1630
PaeR7I CTCGAG 1 cut(s) 1430
PciI ACATGT 1 cut(s) 1626
PciSI GCTCTTC 2 cut(s) 966, 1072
PcsI WCGNNNNNNNCGW 3 cut(s) 12, 48, 57
PctI GAATGC 2 cut(s) 328, 1225
PfeI GAWTC 2 cut(s) 221, 1157
PflFI GACNNNGTC 1 cut(s) 1645
PflMI CCANNNNNTGG 1 cut(s) 686
PkrI GCNGC 5 cut(s) 230, 546, 900, 1195, 1366
PleI GAGTC 6 cut(s) 205, 235, 370, 1081, 1289, 1646
PpsI GAGTC 6 cut(s) 205, 235, 370, 1081, 1289, 1646
PscI ACATGT 1 cut(s) 1626
PshAI GACNNNNGTC 1 cut(s) 434
PsiI TTATAA 1 cut(s) 1392
Psp6I CCWGG 1 cut(s) 108
PspFI CCCAGC 2 cut(s) 147, 1077
PspGI CCWGG 1 cut(s) 108
PspN4I GGNNCC 4 cut(s) 69, 721, 1098, 1692
PspPI GGNCC 2 cut(s) 68, 429
PspXI VCTCGAGB 1 cut(s) 1430
PsuI RGATCY 2 cut(s) 474, 825
PsyI GACNNNGTC 1 cut(s) 1645
PvuII CAGCTG 1 cut(s) 1483
RsaI GTAC 3 cut(s) 1098, 1283, 1457
RsaNI GTAC 3 cut(s) 1097, 1282, 1456
SapI GCTCTTC 2 cut(s) 966, 1072
SatI GCNGC 5 cut(s) 229, 545, 899, 1194, 1365
Sau3AI GATC 5 cut(s) 52, 99, 368, 474, 825
Sau96I GGNCC 2 cut(s) 68, 429
SchI GAGTC 6 cut(s) 205, 235, 371, 1082, 1289, 1646
ScrFI CCNGG 2 cut(s) 24, 110
SduI GDGCHC 2 cut(s) 1468, 1566
SfaNI GCATC 3 cut(s) 722, 1145, 1351
Sfr274I CTCGAG 1 cut(s) 1430
SinI GGWCC 1 cut(s) 429
SlaI CTCGAG 1 cut(s) 1430
SmlI CTYRAG 3 cut(s) 131, 576, 1430
SmoI CTYRAG 3 cut(s) 131, 576, 1430
SsiI CCGC 4 cut(s) 29, 229, 1235, 1688
SspMI CTAG 1 cut(s) 1299
StyD4I CCNGG 2 cut(s) 22, 108
StyI CCWWGG 3 cut(s) 450, 1329, 1416
TaaI ACNGT 3 cut(s) 673, 787, 1114
TaiI ACGT 1 cut(s) 414
TatI WGTACW 2 cut(s) 1281, 1455
TauI GCSGC 1 cut(s) 231
TfiI GAWTC 2 cut(s) 221, 1157
TscAI CASTG 4 cut(s) 397, 439, 1312, 1578
TseFI GTSAC 1 cut(s) 796
TseI GCWGC 4 cut(s) 544, 898, 1193, 1364
Tsp45I GTSAC 1 cut(s) 796
TspGWI ACGGA 2 cut(s) 234, 1691
TspRI CASTG 4 cut(s) 397, 439, 1312, 1578
Tth111I GACNNNGTC 1 cut(s) 1645
Van91I CCANNNNNTGG 1 cut(s) 686
VpaK11BI GGWCC 1 cut(s) 429
XapI RAATTY 2 cut(s) 587, 914
XceI RCATGY 1 cut(s) 1630
XhoI CTCGAG 1 cut(s) 1430
XmiI GTMKAC 1 cut(s) 1704
XspI CTAG 1 cut(s) 1299
Zsp2I ATGCAT 1 cut(s) 1060
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.