Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003751

Physical Location & Seq

Genomic Coordinates Forward (+)

21929591 .. 21932693

Gene Structure 3103 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG224600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGGTGGCCGAAGTAGCAAGGTTCATCCCTTACCGCTTTTATATCGGGTTCTTGAGGAGGCGTTTGATATTGCTGAACTAGATATTGATGATGACATTTCGGAGCCCAGCAGTGAAGAAGAACGCGAATTGGAAATGGAGCTTCAGGAATTGGAACTGGAAATCGAGCTGGAACAACTGGAAGTGGAAATCCAGAGGCTAGAACGGGAATGGCAAATCGAGCCGGAACAGGTTCTTGAGGAGGCGTTTGTTCTTGCTGAACAAGATGATGATGAAATTTCGGAGCCCAACAGTGAAGAAGAACGCGAATTGGAAATGGAGCTTCAAGAATTAGAACTGGAAGAACTGGAAGTGGAACTCCAGAGGCTAGAACGGGAATGGCAAATCGAGCCGGAACAGAATGGTGAGGATGCCCTTTTCACCAATTCTCCTGAGATGGCTTATGATGCGTCGGGATCTTCCCCAACCATTTCTCCAAATGCCCCGTTGCAGTTTGGTGTTGAATTGCTATCGTGGACCAGTGTGAATGACATAACCAAGGATGGTGGAATTATTAAGAAGGTCTTGAAAGAGGGAGAAGAATGGGAGAGGGAGAACCCAAAAGATCTTGATGAAGTCATAGTTAAATTTGAGGCCCATCTCGAAGATAAAACACTTGTAGCAAAATCTGACCCCGTGGAATTCACTGTCAAAGAGGGTTACTTCTGTCCTGCATTGGCAAAGGCTGTGAAAACAATGAAGAAGGCCGAAAAAGTATTGCTAACGGTGAAACCACAATATGGATTTGGGGACAAGGGTAAGCCTGCCTCTGGTGATGAGGGTGCTGTTCCTCCAAATGCAACTCTTCATATTACTCTAGAGTTGGTATCGTGGAGAACAGTCTCAGAATTGACAGATGACCAGAAAGTTATTAAGAAGATCCTAAAAGAAGGGGAAGGGGATGAGCGTCCAAATGAAGGAGCTTTTGTTACAGTGAAGGAAGGTCCAGTCCCATCTGCTGGTACAGACAACCCATCTGCTCAAGTCTGGAGGACTCCTGGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0006457 GO:0006464 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010286 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0033554 GO:0034605 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051716 GO:0061077 GO:0070370 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

FKBP_C TPR_1 TPR_2 TPR_8

Protein Analysis

348

Amino Acids

39.27

Weight (kDa)

4.24

Isoelectric Point (pI)

45.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	198 - 289	3.6e-17	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25230 AT3G25230
fragaria_vesca	FvH4_2g18150 FvH4_2g18150 FvH4_2g18150
malus_domestica	MD05G1166200.v1.1 MD10G1156300.v1.1
prunus_persica	Prupe.8G194100_v2.0.a1
pyrus_communis	pycom05g15490 pycom10g13450
rosa_chinensis	RchiOBHm_Chr6g0283541 RchiOBHm_Chr7g0204881
rosa_laevigata	RLG00000003424 RLG00000012818
rosa_multiflora	Rmu_sc0005719.1_g000005 Rmu_sc0007194.1_g000004 Rmu_sc0031409.1_g000001 Rmu_sc0031410.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252700 Rroxscaffold_7G00185450
rosa_rugosa	Rorug06G0155300 Rorug06G0155400 Rorug06G0155500 Rorug06G0155600 Rorug07G0086300
rosa_samantha	Rh6AG267500 Rh6BG174200 Rh6BG270000 Rh6DG263400 Rh7AG217000 Rh7CG230200 Rh7DG224600
rosa_wichuraiana	Rw6G023160 Rw7G018810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	779, 998
AccII	CGCG	2 cut(s)	126, 306
AciI	CCGC	1 cut(s)	35
AclWI	GGATC	2 cut(s)	463, 913
AcoI	YGGCCR	1 cut(s)	7
AcsI	RAATTY	3 cut(s)	276, 626, 680
AcuI	CTGAAG	1 cut(s)	128
AfaI	GTAC	1 cut(s)	1003
AfiI	CCNNNNNNNGG	4 cut(s)	779, 809, 956, 998
AgsI	TTSAA	3 cut(s)	326, 503, 568
AjnI	CCWGG	1 cut(s)	1036
AluBI	AGCT	4 cut(s)	142, 169, 322, 962
AluI	AGCT	4 cut(s)	142, 169, 322, 962
Alw26I	GTCTC	1 cut(s)	886
AlwI	GGATC	2 cut(s)	463, 913
AoxI	GGCC	3 cut(s)	7, 633, 744
ApoI	RAATTY	3 cut(s)	276, 626, 680
Asp700I	GAANNNNTTC	1 cut(s)	231
AspS9I	GGNCC	3 cut(s)	516, 634, 983
AsuHPI	GGTGA	4 cut(s)	412, 416, 778, 824
AvaII	GGWCC	2 cut(s)	516, 983
BanII	GRGCYC	2 cut(s)	108, 288
BccI	CCATC	5 cut(s)	430, 536, 645, 1000, 1021
BciT130I	CCWGG	1 cut(s)	1038
BcoDI	GTCTC	1 cut(s)	886
BfaI	CTAG	4 cut(s)	80, 200, 368, 857
BglII	AGATCT	1 cut(s)	604
Bme1390I	CCNGG	1 cut(s)	1038
Bme18I	GGWCC	2 cut(s)	516, 983
BmgT120I	GGNCC	3 cut(s)	516, 634, 983
BmiI	GGNNCC	2 cut(s)	105, 285
BmrFI	CCNGG	1 cut(s)	1038
BmsI	GCATC	2 cut(s)	400, 436
BpmI	CTGGAG	1 cut(s)	344
BpuEI	CTTGAG	3 cut(s)	74, 257, 1005
BsaJI	CCNNGG	2 cut(s)	537, 675
BsaXI	ACNNNNNCTCC	6 cut(s)	412, 442, 457, 487, 951, 981
Bsc4I	CCNNNNNNNGG	4 cut(s)	779, 809, 956, 998
Bse1I	ACTGG	6 cut(s)	162, 183, 342, 351, 519, 986
BseBI	CCWGG	1 cut(s)	1038
BseDI	CCNNGG	2 cut(s)	537, 675
BseGI	GGATG	4 cut(s)	25, 415, 547, 946
BseLI	CCNNNNNNNGG	4 cut(s)	779, 809, 956, 998
BseMII	CTCAG	2 cut(s)	423, 897
BseNI	ACTGG	6 cut(s)	162, 183, 342, 351, 519, 986
BseRI	GAGGAG	2 cut(s)	71, 254
BseYI	CCCAGC	1 cut(s)	107
Bsh1236I	CGCG	2 cut(s)	126, 306
BshFI	GGCC	3 cut(s)	9, 635, 746
BsiSI	CCGG	2 cut(s)	224, 392
BslFI	GGGAC	2 cut(s)	803, 974
BslI	CCNNNNNNNGG	4 cut(s)	779, 809, 956, 998
BsmAI	GTCTC	1 cut(s)	886
BsmFI	GGGAC	2 cut(s)	803, 974
BsnI	GGCC	3 cut(s)	9, 635, 746
Bsp1286I	GDGCHC	2 cut(s)	108, 288
Bsp143I	GATC	3 cut(s)	455, 604, 918
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	3 cut(s)	9, 635, 746
BspCNI	CTCAG	2 cut(s)	424, 896
BspFNI	CGCG	2 cut(s)	126, 306
BspLI	GGNNCC	2 cut(s)	105, 285
BspPI	GGATC	2 cut(s)	463, 913
BsrI	ACTGG	6 cut(s)	162, 183, 342, 351, 519, 986
BssECI	CCNNGG	2 cut(s)	537, 675
BssMI	GATC	3 cut(s)	455, 604, 918
BssT1I	CCWWGG	1 cut(s)	537
Bst2UI	CCWGG	1 cut(s)	1038
Bst4CI	ACNGT	5 cut(s)	293, 688, 766, 880, 973
Bst6I	CTCTTC	1 cut(s)	849
BstC8I	GCNNGC	1 cut(s)	804
BstDEI	CTNAG	2 cut(s)	432, 883
BstDSI	CCRYGG	1 cut(s)	675
BstF5I	GGATG	4 cut(s)	25, 415, 547, 946
BstFNI	CGCG	2 cut(s)	126, 306
BstKTI	GATC	3 cut(s)	458, 607, 921
BstMAI	GTCTC	1 cut(s)	886
BstMBI	GATC	3 cut(s)	455, 604, 918
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 220, 388, 446
BstNI	CCWGG	1 cut(s)	1038
BstSCI	CCNGG	1 cut(s)	1036
BstUI	CGCG	2 cut(s)	126, 306
BstX2I	RGATCY	3 cut(s)	455, 604, 918
BstYI	RGATCY	3 cut(s)	455, 604, 918
BsuRI	GGCC	3 cut(s)	9, 635, 746
BtgI	CCRYGG	1 cut(s)	675
BtsCI	GGATG	4 cut(s)	25, 415, 547, 946
BtsI	GCAGTG	1 cut(s)	118
BtsIMutI	CAGTG	5 cut(s)	118, 298, 526, 684, 978
Cac8I	GCNNGC	1 cut(s)	804
Cfr13I	GGNCC	3 cut(s)	516, 634, 983
CseI	GACGC	2 cut(s)	438, 935
Csp6I	GTAC	1 cut(s)	1002
CspCI	CAANNNNNGTGG	2 cut(s)	526, 561
CviQI	GTAC	1 cut(s)	1002
DdeI	CTNAG	2 cut(s)	432, 883
DpnI	GATC	3 cut(s)	457, 606, 920
DpnII	GATC	3 cut(s)	455, 604, 918
EaeI	YGGCCR	1 cut(s)	7
Eam1104I	CTCTTC	1 cut(s)	849
EarI	CTCTTC	1 cut(s)	849
Eco130I	CCWWGG	1 cut(s)	537
Eco24I	GRGCYC	2 cut(s)	108, 288
Eco47I	GGWCC	2 cut(s)	516, 983
Eco57I	CTGAAG	1 cut(s)	128
EcoRI	GAATTC	1 cut(s)	680
EcoRII	CCWGG	1 cut(s)	1036
EcoT14I	CCWWGG	1 cut(s)	537
EcoT38I	GRGCYC	2 cut(s)	108, 288
ErhI	CCWWGG	1 cut(s)	537
FaiI	YATR	6 cut(s)	43, 444, 533, 620, 780, 849
FalI	AAGNNNNNCTT	2 cut(s)	548, 580
FaqI	GGGAC	2 cut(s)	803, 974
FokI	GGATG	4 cut(s)	12, 422, 554, 953
FriOI	GRGCYC	2 cut(s)	108, 288
FspBI	CTAG	4 cut(s)	80, 200, 368, 857
GsaI	CCCAGC	1 cut(s)	111
GsuI	CTGGAG	1 cut(s)	344
HaeIII	GGCC	3 cut(s)	9, 635, 746
HapII	CCGG	2 cut(s)	224, 392
HgaI	GACGC	2 cut(s)	438, 935
HinfI	GANTC	1 cut(s)	1033
HpaII	CCGG	2 cut(s)	224, 392
HphI	GGTGA	4 cut(s)	412, 416, 778, 824
Hpy166II	GTNNAC	1 cut(s)	516
Hpy188I	TCNGA	4 cut(s)	103, 283, 670, 886
Hpy8I	GTNNAC	1 cut(s)	516
Hpy99I	CGWCG	1 cut(s)	454
HpyAV	CCTTC	7 cut(s)	553, 736, 923, 929, 950, 970, 974
HpyCH4III	ACNGT	5 cut(s)	293, 688, 766, 880, 973
HpyCH4V	TGCA	3 cut(s)	490, 713, 839
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 220, 388, 446
HpyF3I	CTNAG	2 cut(s)	432, 883
Kzo9I	GATC	3 cut(s)	455, 604, 918
LmnI	GCTCC	5 cut(s)	103, 139, 283, 319, 959
LweI	GCATC	2 cut(s)	400, 436
MaeI	CTAG	4 cut(s)	80, 200, 368, 857
MaeIII	GTNAC	2 cut(s)	698, 967
MalI	GATC	3 cut(s)	457, 606, 920
MboI	GATC	3 cut(s)	455, 604, 918
MflI	RGATCY	3 cut(s)	455, 604, 918
MhlI	GDGCHC	2 cut(s)	108, 288
MlyI	GAGTC	1 cut(s)	1027
MroXI	GAANNNNTTC	1 cut(s)	231
MseI	TTAA	3 cut(s)	555, 624, 912
MspI	CCGG	2 cut(s)	224, 392
MspR9I	CCNGG	1 cut(s)	1038
MvaI	CCWGG	1 cut(s)	1038
MvnI	CGCG	2 cut(s)	126, 306
MwoI	GCNNNNNNNGC	4 cut(s)	15, 220, 388, 446
NdeII	GATC	3 cut(s)	455, 604, 918
NlaIV	GGNNCC	2 cut(s)	105, 285
PdmI	GAANNNNTTC	1 cut(s)	231
PflMI	CCANNNNNTGG	2 cut(s)	779, 998
PfoI	TCCNGGA	1 cut(s)	1036
PleI	GAGTC	1 cut(s)	1027
PpsI	GAGTC	1 cut(s)	1027
Psp6I	CCWGG	1 cut(s)	1036
PspFI	CCCAGC	1 cut(s)	107
PspGI	CCWGG	1 cut(s)	1036
PspN4I	GGNNCC	2 cut(s)	105, 285
PspPI	GGNCC	3 cut(s)	516, 634, 983
PsuI	RGATCY	3 cut(s)	455, 604, 918
RsaI	GTAC	1 cut(s)	1003
RsaNI	GTAC	1 cut(s)	1002
SaqAI	TTAA	3 cut(s)	555, 624, 912
Sau3AI	GATC	3 cut(s)	455, 604, 918
Sau96I	GGNCC	3 cut(s)	516, 634, 983
SchI	GAGTC	1 cut(s)	1027
ScrFI	CCNGG	1 cut(s)	1038
SduI	GDGCHC	2 cut(s)	108, 288
SetI	ASST	8 cut(s)	24, 144, 171, 234, 324, 564, 964, 985
SfaNI	GCATC	2 cut(s)	400, 436
SinI	GGWCC	2 cut(s)	516, 983
SmlI	CTYRAG	3 cut(s)	53, 236, 1020
SmoI	CTYRAG	3 cut(s)	53, 236, 1020
SsiI	CCGC	1 cut(s)	35
SspMI	CTAG	4 cut(s)	80, 200, 368, 857
StyD4I	CCNGG	1 cut(s)	1036
StyI	CCWWGG	1 cut(s)	537
TaaI	ACNGT	5 cut(s)	293, 688, 766, 880, 973
TaqI	TCGA	4 cut(s)	165, 219, 387, 642
Tru1I	TTAA	3 cut(s)	555, 624, 912
Tru9I	TTAA	3 cut(s)	555, 624, 912
TscAI	CASTG	5 cut(s)	118, 298, 526, 691, 978
TspDTI	ATGAA	6 cut(s)	14, 288, 627, 752, 836, 969
TspRI	CASTG	5 cut(s)	118, 298, 526, 691, 978
Van91I	CCANNNNNTGG	2 cut(s)	779, 998
VpaK11BI	GGWCC	2 cut(s)	516, 983
XapI	RAATTY	3 cut(s)	276, 626, 680
XbaI	TCTAGA	1 cut(s)	856
XmnI	GAANNNNTTC	1 cut(s)	231
XspI	CTAG	4 cut(s)	80, 200, 368, 857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.